Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001091

Physical Location & Seq

Genomic Coordinates Reverse (-)

2326441 .. 2330986

Gene Structure 4546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGATCCACAGAATCCAGCAGAAAAGCGATTCTCACTGCGCAATGACAAACAAAGTAGCATTGCAAAGCACAAGAGCAGCAAAGTCACACTTCAAGATATCCAAGTTGTCCAGAATTTGATTGAAAGGTGTCTGCAGTTGTATATGAACAGAGATGAAGTCTTCAATACCCTCTTAGATCGTGCTAGGATTGAGCCTGAGTTTACAAAATTGGTATGGCAGAAACTGGAAGAAGAAAATGCAGACTTTTTCAAGGCCTACCACCTAAGGCTAAAGCTCAAAGATCAAATTCATATGTATAACCGGTTGCTTGAGCAGCAATACCATCTGATGAAACAGCAAGAGCGTGCAGAGTTTGAGATAGCTCCTGTGCAGAATGGAATGCGTCACATGCCTGGTTATCCCGAAATCAATTCCATGGGCACCATATCTGGTTGTCATGCAGTTAATGGAATACCTGCTCCAGGAAACTTCCACCGTATGCAACATAAGTGTGCGAAAGGAAGTCCAGCTAATACAGTACCTTTCTTCCCCGCTGGTGATATGAAGTTAGATGGGGCTTCAAGTCCTGTAGCAGTGGCATTGAATGGACAATTTTCCTTCGCTCCTGAAACATCAGGGCTAAATCTGGACACACCAGTGCTTGACTCTGCATTTACTTCTGATATAGCAAATCTAGAGAGGTTGCGTCTTGGAGCAGATGGTCAGAACACATGTCCTGAGGAGTCACTTCAATCATCGGATCAGATGACTTGGGATTTTGGCTTTTCTAATACCGCTGAATGGTCAAACTTTCAAGAGTTTGGACCAGCGGGGAACTATTCAGGCTCAGAGTTTCAACCTTCTCAGTTGGATATTAATCTTGATTCTGCAGAGCAAAATGACATGGTTGATGGGTTCCTTCTTGATGGTCCACCTGGTCAAGGCACTCAACCTGCAGAGGAAACTAAGCCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

319

Amino Acids

35.77

Weight (kDa)

5.02

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_thal_3526	PF09713	37 - 88	1e-25	Plant protein 1589 of unknown function (A_thal_3526)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46420 AT2G46420 AT2G46420 AT3G61700 AT3G61700 AT3G61700 AT3G61700
fragaria_vesca	FvH4_7g16290 FvH4_7g16290 FvH4_7g16290 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180
malus_domestica	MD01G1079500.v1.1 MD01G1216500.v1.1 MD07G1148300.v1.1 MD07G1286500.v1.1 MD12G1148300.v1.1
prunus_persica	Prupe.2G186600_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1
pyrus_communis	pycom01g10780 pycom01g22720 pycom07g14730 pycom07g25960
rosa_chinensis	RchiOBHm_Chr1g0359301 RchiOBHm_Chr1g0380221
rosa_laevigata	RLG00000026317 RLG00000027882
rosa_multiflora	Rmu_co8458617.1_g000001 Rmu_sc0001232.1_g000028 Rmu_sc0002689.1_g000001 Rmu_ssc0000135.1_g000052
rosa_roxburghii	Rroxscaffold_4G00279550 Rroxscaffold_4G00297130
rosa_rugosa	Rorug01G0269300 Rorug01G0269400 Rorug01G0419200
rosa_samantha	Rh1AG283300 Rh1AG444000 Rh1BG249500 Rh1BG399100 Rh1CG267400 Rh1CG412500 Rh1DG278400 Rh1DG429600
rosa_wichuraiana	Rw1G025150 Rw1G038560 Rw1G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	41
Acc36I	ACCTGC	2 cut(s)	466, 943
AccB1I	GGYRCC	1 cut(s)	422
AciI	CCGC	3 cut(s)	534, 777, 812
AclWI	GGATC	2 cut(s)	12, 750
AcsI	RAATTY	2 cut(s)	115, 288
AfaI	GTAC	1 cut(s)	522
AfiI	CCNNNNNNNGG	3 cut(s)	464, 783, 923
AflIII	ACRYGT	1 cut(s)	713
AgeI	ACCGGT	1 cut(s)	303
AgsI	TTSAA	9 cut(s)	95, 125, 166, 253, 564, 586, 734, 797, 839
AjnI	CCWGG	3 cut(s)	394, 463, 916
AleI	CACNNNNGTG	1 cut(s)	638
AluBI	AGCT	3 cut(s)	277, 365, 512
AluI	AGCT	3 cut(s)	277, 365, 512
AlwI	GGATC	2 cut(s)	12, 750
AlwNI	CAGNNNCTG	1 cut(s)	226
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	2 cut(s)	78, 316
ApoI	RAATTY	2 cut(s)	115, 288
AseI	ATTAAT	1 cut(s)	858
AsiGI	ACCGGT	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	806, 911
AsuHPI	GGTGA	1 cut(s)	551
AvaII	GGWCC	2 cut(s)	806, 911
AxyI	CCTNAGG	2 cut(s)	266, 720
BaeGI	GKGCMC	1 cut(s)	425
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	90, 328
BccI	CCATC	5 cut(s)	333, 548, 695, 887, 902
BciT130I	CCWGG	3 cut(s)	396, 465, 918
BfaI	CTAG	2 cut(s)	186, 677
BfmI	CTRYAG	4 cut(s)	134, 570, 870, 936
BfuAI	ACCTGC	2 cut(s)	466, 943
BisI	GCNGC	2 cut(s)	79, 317
BlsI	GCNGC	2 cut(s)	80, 318
Bme1390I	CCNGG	3 cut(s)	396, 465, 918
Bme18I	GGWCC	2 cut(s)	806, 911
BmgT120I	GGNCC	2 cut(s)	806, 911
BmiI	GGNNCC	3 cut(s)	6, 424, 899
BmrFI	CCNGG	3 cut(s)	396, 465, 918
BpiI	GAAGAC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	332
BsaBI	GATNNNNATC	1 cut(s)	858
BsaJI	CCNNGG	1 cut(s)	417
BsaWI	WCCGGW	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	3 cut(s)	464, 783, 923
Bse118I	RCCGGY	1 cut(s)	303
Bse1I	ACTGG	2 cut(s)	231, 638
Bse21I	CCTNAGG	2 cut(s)	266, 720
Bse3DI	GCAATG	2 cut(s)	49, 60
Bse8I	GATNNNNATC	1 cut(s)	858
BseBI	CCWGG	3 cut(s)	396, 465, 918
BseDI	CCNNGG	1 cut(s)	417
BseJI	GATNNNNATC	1 cut(s)	858
BseLI	CCNNNNNNNGG	3 cut(s)	464, 783, 923
BseMI	GCAATG	2 cut(s)	49, 60
BseMII	CTCAG	4 cut(s)	189, 711, 843, 860
BseNI	ACTGG	2 cut(s)	231, 638
BseRI	GAGGAG	1 cut(s)	737
BseSI	GKGCMC	1 cut(s)	425
BseXI	GCAGC	2 cut(s)	90, 328
BsgI	GTGCAG	2 cut(s)	369, 392
BshFI	GGCC	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	422
BshTI	ACCGGT	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	304
BslI	CCNNNNNNNGG	3 cut(s)	464, 783, 923
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp143I	GATC	4 cut(s)	4, 178, 283, 742
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	3 cut(s)	534, 777, 812
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	4 cut(s)	190, 712, 842, 859
BspLI	GGNNCC	3 cut(s)	6, 424, 899
BspMAI	CTGCAG	3 cut(s)	138, 874, 940
BspMI	ACCTGC	2 cut(s)	466, 943
BspPI	GGATC	2 cut(s)	12, 750
BspT107I	GGYRCC	1 cut(s)	422
BsrDI	GCAATG	2 cut(s)	49, 60
BsrFI	RCCGGY	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	231, 638
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	4 cut(s)	4, 178, 283, 742
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	3 cut(s)	396, 465, 918
Bst4CI	ACNGT	2 cut(s)	479, 520
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	7 cut(s)	175, 198, 266, 720, 829, 846, 948
BstDSI	CCRYGG	1 cut(s)	417
BstENI	CCTNNNNNAGG	2 cut(s)	462, 921
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	4 cut(s)	7, 181, 286, 745
BstMBI	GATC	4 cut(s)	4, 178, 283, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	316, 391
BstNI	CCWGG	3 cut(s)	396, 465, 918
BstNSI	RCATGY	2 cut(s)	394, 717
BstSCI	CCNGG	3 cut(s)	394, 463, 916
BstSFI	CTRYAG	4 cut(s)	134, 570, 870, 936
BstSLI	GKGCMC	1 cut(s)	425
BstV1I	GCAGC	2 cut(s)	90, 328
BstV2I	GAAGAC	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	2 cut(s)	266, 720
BsuRI	GGCC	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	417
BtsI	GCAGTG	2 cut(s)	35, 582
BtsIMutI	CAGTG	3 cut(s)	35, 582, 645
BveI	ACCTGC	2 cut(s)	466, 943
Cac8I	GCNNGC	1 cut(s)	348
CaiI	CAGNNNCTG	1 cut(s)	226
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	806, 911
CseI	GACGC	2 cut(s)	374, 677
CsiI	ACCWGGT	1 cut(s)	916
Csp6I	GTAC	1 cut(s)	521
CspAI	ACCGGT	1 cut(s)	303
CviAII	CATG	5 cut(s)	391, 418, 440, 714, 886
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	7 cut(s)	175, 198, 266, 720, 829, 846, 948
DpnI	GATC	4 cut(s)	6, 180, 285, 744
DpnII	GATC	4 cut(s)	4, 178, 283, 742
Eco130I	CCWWGG	1 cut(s)	417
Eco147I	AGGCCT	1 cut(s)	257
Eco32I	GATATC	1 cut(s)	100
Eco47I	GGWCC	2 cut(s)	806, 911
Eco81I	CCTNAGG	2 cut(s)	266, 720
EcoNI	CCTNNNNNAGG	2 cut(s)	462, 921
EcoRII	CCWGG	3 cut(s)	394, 463, 916
EcoRV	GATATC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	5 cut(s)	394, 421, 443, 717, 889
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FatI	CATG	5 cut(s)	390, 417, 439, 713, 885
FauI	CCCGC	2 cut(s)	541, 805
FauNDI	CATATG	1 cut(s)	294
Fnu4HI	GCNGC	2 cut(s)	79, 317
Fsp4HI	GCNGC	2 cut(s)	79, 317
FspBI	CTAG	2 cut(s)	186, 677
FspI	TGCGCA	1 cut(s)	41
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	2 cut(s)	79, 317
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	304
HgaI	GACGC	2 cut(s)	374, 677
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	5 cut(s)	394, 421, 443, 717, 889
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	5 cut(s)	13, 30, 647, 725, 866
HpaII	CCGG	1 cut(s)	304
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	2 cut(s)	204, 914
Hpy188I	TCNGA	6 cut(s)	330, 664, 708, 742, 747, 832
Hpy8I	GTNNAC	2 cut(s)	204, 914
HpyAV	CCTTC	3 cut(s)	610, 852, 911
HpyCH4III	ACNGT	2 cut(s)	479, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	316, 391
HpyF3I	CTNAG	7 cut(s)	175, 198, 266, 720, 829, 846, 948
Hsp92II	CATG	5 cut(s)	394, 421, 443, 717, 889
HspAI	GCGC	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	4, 178, 283, 742
LmnI	GCTCC	4 cut(s)	370, 466, 610, 695
Lsp1109I	GCAGC	2 cut(s)	90, 328
MabI	ACCWGGT	1 cut(s)	916
MaeI	CTAG	2 cut(s)	186, 677
MaeIII	GTNAC	3 cut(s)	85, 386, 726
MalI	GATC	4 cut(s)	6, 180, 285, 744
MboI	GATC	4 cut(s)	4, 178, 283, 742
MboII	GAAGA	4 cut(s)	154, 242, 245, 520
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	5 cut(s)	115, 209, 288, 412, 593
MlyI	GAGTC	2 cut(s)	641, 734
MmeI	TCCRAC	1 cut(s)	831
MnlI	CCTC	4 cut(s)	182, 675, 715, 934
MseI	TTAA	2 cut(s)	447, 858
MslI	CAYNNNNRTG	2 cut(s)	492, 638
MspA1I	CMGCKG	3 cut(s)	536, 779, 812
MspI	CCGG	1 cut(s)	304
MspR9I	CCNGG	3 cut(s)	396, 465, 918
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	3 cut(s)	396, 465, 918
MwoI	GCNNNNNNNGC	2 cut(s)	316, 391
NcoI	CCATGG	1 cut(s)	417
NdeI	CATATG	1 cut(s)	294
NdeII	GATC	4 cut(s)	4, 178, 283, 742
NlaIII	CATG	5 cut(s)	394, 421, 443, 717, 889
NlaIV	GGNNCC	3 cut(s)	6, 424, 899
NmuCI	GTSAC	3 cut(s)	85, 386, 726
NsbI	TGCGCA	1 cut(s)	41
NspI	RCATGY	2 cut(s)	394, 717
OliI	CACNNNNGTG	1 cut(s)	638
PceI	AGGCCT	1 cut(s)	257
PciI	ACATGT	1 cut(s)	713
PctI	GAATGC	1 cut(s)	387
PfeI	GAWTC	3 cut(s)	13, 30, 866
PfoI	TCCNGGA	1 cut(s)	463
PinAI	ACCGGT	1 cut(s)	303
PkrI	GCNGC	2 cut(s)	80, 318
PleI	GAGTC	2 cut(s)	641, 733
PpsI	GAGTC	2 cut(s)	641, 733
PscI	ACATGT	1 cut(s)	713
PshBI	ATTAAT	1 cut(s)	858
Psp6I	CCWGG	3 cut(s)	394, 463, 916
PspGI	CCWGG	3 cut(s)	394, 463, 916
PspN4I	GGNNCC	3 cut(s)	6, 424, 899
PspPI	GGNCC	2 cut(s)	806, 911
PstI	CTGCAG	3 cut(s)	138, 874, 940
PstNI	CAGNNNCTG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
RseI	CAYNNNNRTG	2 cut(s)	492, 638
SaqAI	TTAA	2 cut(s)	447, 858
SatI	GCNGC	2 cut(s)	79, 317
Sau3AI	GATC	4 cut(s)	4, 178, 283, 742
Sau96I	GGNCC	2 cut(s)	806, 911
SchI	GAGTC	2 cut(s)	641, 734
ScrFI	CCNGG	3 cut(s)	396, 465, 918
SduI	GDGCHC	1 cut(s)	425
SexAI	ACCWGGT	1 cut(s)	916
SfcI	CTRYAG	4 cut(s)	134, 570, 870, 936
SinI	GGWCC	2 cut(s)	806, 911
SmiMI	CAYNNNNRTG	2 cut(s)	492, 638
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	5 cut(s)	115, 209, 288, 412, 593
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	3 cut(s)	534, 777, 812
SspMI	CTAG	2 cut(s)	186, 677
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	3 cut(s)	394, 463, 916
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	479, 520
TasI	AATT	5 cut(s)	115, 209, 288, 412, 593
TfiI	GAWTC	3 cut(s)	13, 30, 866
Tru1I	TTAA	2 cut(s)	447, 858
Tru9I	TTAA	2 cut(s)	447, 858
TscAI	CASTG	3 cut(s)	42, 582, 645
TseFI	GTSAC	3 cut(s)	85, 386, 726
TseI	GCWGC	2 cut(s)	78, 316
Tsp45I	GTSAC	3 cut(s)	85, 386, 726
TspDTI	ATGAA	5 cut(s)	161, 171, 281, 347, 560
TspRI	CASTG	3 cut(s)	42, 582, 645
VpaK11BI	GGWCC	2 cut(s)	806, 911
VspI	ATTAAT	1 cut(s)	858
XagI	CCTNNNNNAGG	2 cut(s)	462, 921
XapI	RAATTY	2 cut(s)	115, 288
XbaI	TCTAGA	1 cut(s)	676
XceI	RCATGY	2 cut(s)	394, 717
XspI	CTAG	2 cut(s)	186, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.