RLG00000026317

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001091
Physical Location & Seq
Reverse (-)
2135395 .. 2140929
5535 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026317

Sequence Viewer

Length: 1215 bp
ATGGATCCACAGAATCCAGCAGAAAAGCGATTCTCACTGCGCAATGACAAACAAAGTAGCATTGCAAAGAACAAGAGCAGCAAAGTCACACTTCAAGATATCCAAGTTGTCCAGAATTTGATTGAAAGGTGTCTGCAGTTGTATATGAACAGAGATGAAGTCATCAATACCCTCTTAGATCGTGCTAGGATTGAGCCTGAGTTTACAAAATTGGTATGGCAGAAACTGGAAGAAGAAAATGCAGAATTTTTCAAGGCCTACCACCTAAGGCTAAAGCTCAAAGATCAAATTCATATGTATAACCGGTTGCTTGAGTGGCAATACCATCTGATGAAACAGCAAGAGCGTGCAGAGTTTGAGATAGCTCCTGTGCAGAATGGAATGCGTCACATGCCTGGTTATCCTGAAATCAATTCCATGGGCACCATATCTGCTCCGGGAAACTTCCACCGTATGCAACATAAGTGTGAGAAAGGAAGTCCAGCTAACACAGTACCTTTCTTCCCCGCTGGTGATATGAAGTTAGATGGGGCTTCAAGTCCTGTAGCAGTGGCATTGAATGGACAATTTTCCTTCACTCCTGAAACATCAGGGCTAAATCTCGACACACCAGTGCTTGACTCTGCATTTACTGCTGATATAGCAAATCTAGAGAGGTTGCGTCTTGGAGCAGATGGTCAGAACACATGTCCTGAGGAGTCACTTCAATCATCAGATCAGATGACTTGGGACTTCGGCTTCTCTAATACCGCTGAATGGTCAAACTTTCAAGAGTTTGGACCAGCGGGGAACTATTCAGGCTCAGAGTTTCAACCTTCTCAGTTGGATATTAATCTTGATTCTGCAGAGCAAAATGACATGGTTGATGGGTTCCTTCTCGATGGTCCACCTGGTCAAGGCACTCAAACTGCAGAGGAAACTAAGCCAAAGTATATGCATATGTACCTGTCAATAATGATATTGTTCAATCTCAGTGACTTGATAGTACTACAAGTGCCAGCTACTAGCTCATCATCGAAAAAACTAACCCACCATATCCGTTATATGGGCGGAAAGGGAACAACTGCAGTTTTGGCAGCCAGCGGCAGGTACAGCAGCAGCAACAAGTCAGGGCCGAGGGACAACAGCGCCTCGCCAGCTGCCGGCGCACCACTCTTAGCAGATGAAGCCCCCGGAGCCCCACGCACAGCAAGTGATAATGCCAGTGCACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

405

Amino Acids

44.72

Weight (kDa)

5.29

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 37 - 88 1.2e-25 Plant protein 1589 of unknown function (A_thal_3526)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 41
Acc36I ACCTGC 1 cut(s) 1077
AccB1I GGYRCC 1 cut(s) 422
AciI CCGC 5 cut(s) 507, 750, 785, 1050, 1083
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 3 cut(s) 115, 245, 288
AfaI GTAC 4 cut(s) 495, 944, 987, 1091
AfiI CCNNNNNNNGG 5 cut(s) 756, 896, 1045, 1086, 1142
AflIII ACRYGT 1 cut(s) 686
AgeI ACCGGT 1 cut(s) 303
AgsI TTSAA 9 cut(s) 95, 125, 253, 537, 559, 707, 770, 812, 967
AjnI CCWGG 2 cut(s) 394, 889
AleI CACNNNNGTG 1 cut(s) 611
AluBI AGCT 6 cut(s) 277, 365, 485, 1001, 1008, 1139
AluI AGCT 6 cut(s) 277, 365, 485, 1001, 1008, 1139
Alw21I GWGCWC 1 cut(s) 1210
Alw44I GTGCAC 1 cut(s) 1206
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 226
AoxI GGCC 2 cut(s) 255, 1112
ApaLI GTGCAC 1 cut(s) 1206
ApeKI GCWGC 5 cut(s) 78, 1076, 1095, 1098, 1139
ApoI RAATTY 3 cut(s) 115, 245, 288
AseI ATTAAT 1 cut(s) 831
AsiGI ACCGGT 1 cut(s) 303
AspLEI GCGC 3 cut(s) 42, 1130, 1148
AspS9I GGNCC 3 cut(s) 779, 884, 1112
AsuC2I CCSGG 2 cut(s) 438, 1173
AsuHPI GGTGA 1 cut(s) 524
AvaII GGWCC 2 cut(s) 779, 884
AxyI CCTNAGG 2 cut(s) 266, 693
BaeGI GKGCMC 2 cut(s) 425, 1210
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 422
BanII GRGCYC 1 cut(s) 1180
Bbv12I GWGCWC 1 cut(s) 1210
BbvI GCAGC 5 cut(s) 90, 1088, 1107, 1110, 1126
BccI CCATC 5 cut(s) 333, 521, 668, 860, 875
BciT130I CCWGG 2 cut(s) 396, 891
BcnI CCSGG 2 cut(s) 438, 1173
BfaI CTAG 3 cut(s) 186, 650, 1005
BfmI CTRYAG 5 cut(s) 134, 543, 843, 909, 1065
BfoI RGCGCY 1 cut(s) 1131
BfuAI ACCTGC 1 cut(s) 1077
BisI GCNGC 6 cut(s) 79, 1077, 1084, 1096, 1099, 1140
BlsI GCNGC 6 cut(s) 80, 1078, 1085, 1097, 1100, 1141
BmcAI AGTACT 1 cut(s) 987
Bme1390I CCNGG 4 cut(s) 396, 438, 891, 1173
Bme18I GGWCC 2 cut(s) 779, 884
BmgT120I GGNCC 3 cut(s) 779, 884, 1112
BmiI GGNNCC 4 cut(s) 6, 424, 872, 1177
BmrFI CCNGG 4 cut(s) 396, 438, 891, 1173
BpuEI CTTGAG 1 cut(s) 332
BpuMI CCSGG 2 cut(s) 438, 1173
BsaBI GATNNNNATC 1 cut(s) 831
BsaJI CCNNGG 3 cut(s) 417, 1115, 1171
BsaWI WCCGGW 1 cut(s) 303
Bsc4I CCNNNNNNNGG 5 cut(s) 756, 896, 1045, 1086, 1142
Bse118I RCCGGY 2 cut(s) 303, 1142
Bse1I ACTGG 3 cut(s) 231, 611, 1203
Bse21I CCTNAGG 2 cut(s) 266, 693
Bse3DI GCAATG 2 cut(s) 49, 60
Bse8I GATNNNNATC 1 cut(s) 831
BseBI CCWGG 2 cut(s) 396, 891
BseDI CCNNGG 3 cut(s) 417, 1115, 1171
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 5 cut(s) 756, 896, 1045, 1086, 1142
BseMI GCAATG 2 cut(s) 49, 60
BseMII CTCAG 5 cut(s) 189, 684, 816, 833, 985
BseNI ACTGG 3 cut(s) 231, 611, 1203
BseRI GAGGAG 1 cut(s) 710
BseSI GKGCMC 2 cut(s) 425, 1210
BseXI GCAGC 5 cut(s) 90, 1088, 1107, 1110, 1126
BsgI GTGCAG 2 cut(s) 369, 392
BshFI GGCC 2 cut(s) 257, 1114
BshNI GGYRCC 1 cut(s) 422
BshTI ACCGGT 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 1210
BsiSI CCGG 4 cut(s) 304, 437, 1143, 1173
BslFI GGGAC 2 cut(s) 743, 1133
BslI CCNNNNNNNGG 5 cut(s) 756, 896, 1045, 1086, 1142
BsmFI GGGAC 2 cut(s) 743, 1133
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 2 cut(s) 257, 1114
Bsp1286I GDGCHC 3 cut(s) 425, 1180, 1210
Bsp143I GATC 4 cut(s) 4, 178, 283, 715
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 5 cut(s) 507, 750, 785, 1050, 1083
BspANI GGCC 2 cut(s) 257, 1114
BspCNI CTCAG 5 cut(s) 190, 685, 815, 832, 984
BspLI GGNNCC 4 cut(s) 6, 424, 872, 1177
BspMAI CTGCAG 4 cut(s) 138, 847, 913, 1069
BspMI ACCTGC 1 cut(s) 1077
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 422
BsrDI GCAATG 2 cut(s) 49, 60
BsrFI RCCGGY 2 cut(s) 303, 1142
BsrI ACTGG 3 cut(s) 231, 611, 1203
BssAI RCCGGY 2 cut(s) 303, 1142
BssECI CCNNGG 3 cut(s) 417, 1115, 1171
BssMI GATC 4 cut(s) 4, 178, 283, 715
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 2 cut(s) 396, 891
Bst4CI ACNGT 2 cut(s) 452, 493
BstAPI GCANNNNNTGC 1 cut(s) 632
BstC8I GCNNGC 5 cut(s) 348, 999, 1081, 1137, 1144
BstDEI CTNAG 9 cut(s) 175, 198, 266, 693, 802, 819, 921, 971, 1156
BstDSI CCRYGG 1 cut(s) 417
BstENI CCTNNNNNAGG 1 cut(s) 894
BstH2I RGCGCY 1 cut(s) 1131
BstHHI GCGC 3 cut(s) 42, 1130, 1148
BstKTI GATC 4 cut(s) 7, 181, 286, 718
BstMBI GATC 4 cut(s) 4, 178, 283, 715
BstNI CCWGG 2 cut(s) 396, 891
BstNSI RCATGY 2 cut(s) 394, 690
BstSCI CCNGG 4 cut(s) 394, 436, 889, 1171
BstSFI CTRYAG 5 cut(s) 134, 543, 843, 909, 1065
BstSLI GKGCMC 2 cut(s) 425, 1210
BstV1I GCAGC 5 cut(s) 90, 1088, 1107, 1110, 1126
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 2 cut(s) 266, 693
BsuRI GGCC 2 cut(s) 257, 1114
BtgI CCRYGG 1 cut(s) 417
BtsI GCAGTG 2 cut(s) 35, 555
BtsIMutI CAGTG 5 cut(s) 35, 555, 618, 979, 1210
BveI ACCTGC 1 cut(s) 1077
Cac8I GCNNGC 5 cut(s) 348, 999, 1081, 1137, 1144
CaiI CAGNNNCTG 1 cut(s) 226
CfoI GCGC 3 cut(s) 42, 1130, 1148
Cfr10I RCCGGY 2 cut(s) 303, 1142
Cfr13I GGNCC 3 cut(s) 779, 884, 1112
CseI GACGC 2 cut(s) 374, 650
CsiI ACCWGGT 1 cut(s) 889
Csp6I GTAC 4 cut(s) 494, 943, 986, 1090
CspAI ACCGGT 1 cut(s) 303
CviAII CATG 4 cut(s) 391, 418, 687, 859
CviQI GTAC 4 cut(s) 494, 943, 986, 1090
DdeI CTNAG 9 cut(s) 175, 198, 266, 693, 802, 819, 921, 971, 1156
DpnI GATC 4 cut(s) 6, 180, 285, 717
DpnII GATC 4 cut(s) 4, 178, 283, 715
EciI GGCGGA 1 cut(s) 1065
Eco130I CCWWGG 1 cut(s) 417
Eco147I AGGCCT 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 1180
Eco32I GATATC 1 cut(s) 100
Eco47I GGWCC 2 cut(s) 779, 884
Eco81I CCTNAGG 2 cut(s) 266, 693
EcoNI CCTNNNNNAGG 1 cut(s) 894
EcoRII CCWGG 2 cut(s) 394, 889
EcoRV GATATC 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 939
EcoT38I GRGCYC 1 cut(s) 1180
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 4 cut(s) 394, 421, 690, 862
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 2 cut(s) 743, 1133
FatI CATG 4 cut(s) 390, 417, 686, 858
FauI CCCGC 2 cut(s) 514, 778
FauNDI CATATG 2 cut(s) 294, 939
Fnu4HI GCNGC 6 cut(s) 79, 1077, 1084, 1096, 1099, 1140
FriOI GRGCYC 1 cut(s) 1180
Fsp4HI GCNGC 6 cut(s) 79, 1077, 1084, 1096, 1099, 1140
FspBI CTAG 3 cut(s) 186, 650, 1005
FspI TGCGCA 1 cut(s) 41
GlaI GCGC 3 cut(s) 41, 1129, 1147
GluI GCNGC 6 cut(s) 79, 1077, 1084, 1096, 1099, 1140
HaeII RGCGCY 1 cut(s) 1131
HaeIII GGCC 2 cut(s) 257, 1114
HapII CCGG 4 cut(s) 304, 437, 1143, 1173
HgaI GACGC 2 cut(s) 374, 650
HhaI GCGC 3 cut(s) 42, 1130, 1148
Hin1II CATG 4 cut(s) 394, 421, 690, 862
Hin6I GCGC 3 cut(s) 40, 1128, 1146
HinP1I GCGC 3 cut(s) 40, 1128, 1146
HinfI GANTC 5 cut(s) 13, 30, 620, 698, 839
HpaII CCGG 4 cut(s) 304, 437, 1143, 1173
HphI GGTGA 1 cut(s) 524
Hpy166II GTNNAC 3 cut(s) 204, 887, 1208
Hpy188I TCNGA 5 cut(s) 330, 681, 715, 720, 805
Hpy8I GTNNAC 3 cut(s) 204, 887, 1208
HpyAV CCTTC 3 cut(s) 583, 825, 884
HpyCH4III ACNGT 2 cut(s) 452, 493
HpyF3I CTNAG 9 cut(s) 175, 198, 266, 693, 802, 819, 921, 971, 1156
Hsp92II CATG 4 cut(s) 394, 421, 690, 862
HspAI GCGC 3 cut(s) 40, 1128, 1146
KroI GCCGGC 1 cut(s) 1142
KroNI GCCGGC 1 cut(s) 1144
Kzo9I GATC 4 cut(s) 4, 178, 283, 715
LmnI GCTCC 4 cut(s) 370, 439, 668, 1175
Lsp1109I GCAGC 5 cut(s) 90, 1088, 1107, 1110, 1126
MabI ACCWGGT 1 cut(s) 889
MaeI CTAG 3 cut(s) 186, 650, 1005
MaeIII GTNAC 4 cut(s) 85, 386, 699, 974
MalI GATC 4 cut(s) 6, 180, 285, 717
MboI GATC 4 cut(s) 4, 178, 283, 715
MboII GAAGA 3 cut(s) 242, 245, 493
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 425, 1180, 1210
MluCI AATT 6 cut(s) 115, 209, 245, 288, 412, 566
MlyI GAGTC 2 cut(s) 614, 707
MmeI TCCRAC 1 cut(s) 804
MnlI CCTC 6 cut(s) 182, 648, 688, 907, 1110, 1141
Mph1103I ATGCAT 1 cut(s) 939
MroNI GCCGGC 1 cut(s) 1142
MseI TTAA 1 cut(s) 831
MslI CAYNNNNRTG 2 cut(s) 465, 611
MspA1I CMGCKG 5 cut(s) 509, 752, 785, 1083, 1139
MspI CCGG 4 cut(s) 304, 437, 1143, 1173
MspR9I CCNGG 4 cut(s) 396, 438, 891, 1173
Mva1269I GAATGC 1 cut(s) 387
MvaI CCWGG 2 cut(s) 396, 891
NaeI GCCGGC 1 cut(s) 1144
NciI CCSGG 2 cut(s) 438, 1173
NcoI CCATGG 1 cut(s) 417
NdeI CATATG 2 cut(s) 294, 939
NdeII GATC 4 cut(s) 4, 178, 283, 715
NgoMIV GCCGGC 1 cut(s) 1142
NlaIII CATG 4 cut(s) 394, 421, 690, 862
NlaIV GGNNCC 4 cut(s) 6, 424, 872, 1177
NmeAIII GCCGAG 1 cut(s) 1140
NmuCI GTSAC 4 cut(s) 85, 386, 699, 974
NsbI TGCGCA 1 cut(s) 41
NsiI ATGCAT 1 cut(s) 939
NspI RCATGY 2 cut(s) 394, 690
OliI CACNNNNGTG 1 cut(s) 611
PceI AGGCCT 1 cut(s) 257
PciI ACATGT 1 cut(s) 686
PctI GAATGC 1 cut(s) 387
PdiI GCCGGC 1 cut(s) 1144
PfeI GAWTC 3 cut(s) 13, 30, 839
PfoI TCCNGGA 1 cut(s) 436
PinAI ACCGGT 1 cut(s) 303
PkrI GCNGC 6 cut(s) 80, 1078, 1085, 1097, 1100, 1141
PleI GAGTC 2 cut(s) 614, 706
PpsI GAGTC 2 cut(s) 614, 706
PscI ACATGT 1 cut(s) 686
PshBI ATTAAT 1 cut(s) 831
Psp6I CCWGG 2 cut(s) 394, 889
PspGI CCWGG 2 cut(s) 394, 889
PspN4I GGNNCC 4 cut(s) 6, 424, 872, 1177
PspPI GGNCC 3 cut(s) 779, 884, 1112
PstI CTGCAG 4 cut(s) 138, 847, 913, 1069
PstNI CAGNNNCTG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 1139
RsaI GTAC 4 cut(s) 495, 944, 987, 1091
RsaNI GTAC 4 cut(s) 494, 943, 986, 1090
RseI CAYNNNNRTG 2 cut(s) 465, 611
SaqAI TTAA 1 cut(s) 831
SatI GCNGC 6 cut(s) 79, 1077, 1084, 1096, 1099, 1140
Sau3AI GATC 4 cut(s) 4, 178, 283, 715
Sau96I GGNCC 3 cut(s) 779, 884, 1112
ScaI AGTACT 1 cut(s) 987
SchI GAGTC 2 cut(s) 614, 707
ScrFI CCNGG 4 cut(s) 396, 438, 891, 1173
SduI GDGCHC 3 cut(s) 425, 1180, 1210
SexAI ACCWGGT 1 cut(s) 889
SfcI CTRYAG 5 cut(s) 134, 543, 843, 909, 1065
SinI GGWCC 2 cut(s) 779, 884
SmiMI CAYNNNNRTG 2 cut(s) 465, 611
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 6 cut(s) 115, 209, 245, 288, 412, 566
SseBI AGGCCT 1 cut(s) 257
SsiI CCGC 5 cut(s) 507, 750, 785, 1050, 1083
SspMI CTAG 3 cut(s) 186, 650, 1005
StuI AGGCCT 1 cut(s) 257
StyD4I CCNGG 4 cut(s) 394, 436, 889, 1171
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 2 cut(s) 452, 493
TaqI TCGA 3 cut(s) 603, 879, 1016
TasI AATT 6 cut(s) 115, 209, 245, 288, 412, 566
TatI WGTACW 1 cut(s) 985
TauI GCSGC 1 cut(s) 1086
TfiI GAWTC 3 cut(s) 13, 30, 839
Tru1I TTAA 1 cut(s) 831
Tru9I TTAA 1 cut(s) 831
TscAI CASTG 5 cut(s) 42, 555, 618, 979, 1210
TseFI GTSAC 4 cut(s) 85, 386, 699, 974
TseI GCWGC 5 cut(s) 78, 1076, 1095, 1098, 1139
Tsp45I GTSAC 4 cut(s) 85, 386, 699, 974
TspDTI ATGAA 6 cut(s) 161, 171, 281, 347, 533, 1179
TspGWI ACGGA 1 cut(s) 1028
TspRI CASTG 5 cut(s) 42, 555, 618, 979, 1210
VneI GTGCAC 1 cut(s) 1206
VpaK11BI GGWCC 2 cut(s) 779, 884
VspI ATTAAT 1 cut(s) 831
XagI CCTNNNNNAGG 1 cut(s) 894
XapI RAATTY 3 cut(s) 115, 245, 288
XbaI TCTAGA 1 cut(s) 649
XceI RCATGY 2 cut(s) 394, 690
XspI CTAG 3 cut(s) 186, 650, 1005
ZrmI AGTACT 1 cut(s) 987
Zsp2I ATGCAT 1 cut(s) 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.