Rorug01G0419200

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001091
Physical Location & Seq
Forward (+)
52110716 .. 52113484
2769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0419200.1

Sequence Viewer

Length: 801 bp
ATGATTTTCTGGAAATTTCTCCTTCTGTTTCCGCTACTAACCCTAGCTTTCTCCCACCAACCTCTCGACCCCCACCACCTACCCCGGCCGCTGATCATCGAGTACCCCGAGCACGCCGAGCCCCGTTTCAAGGAGCTAGAGGAAGAGCTCAAGCTACACTGTACGAGCTGGAGGTTTTCGGTGGAGGCTAACAATGTGAATCCATGGAAGACGATTCCGGAGGAATGTGTGGAGTATGTGAAGGACTACGTCACCGGCCGGGCTTATGGTGTTGATCTGGAGAGGGTTTCTAATGATGCTGGGGTTTATGCCAAGAGCGTTGAATTGGGTGGTGATGGCAAAGATGTGTGGATTTTCGATGTTGATGATACTCTTCTGTCCAATCTTCCGTATTACGCCGACCATGGTTATGGCTTGGAGGTTTTTGATCAGTTGCAGTTTGATAAGTGGGTCGAGAAGGGCATGGCACCTGCTATAAAGTCCAGCTTGAAACTCTATGAAGAGGTTTTGGGCTTGGGCTTTAAGGTATTCTTGCTCACTGGGCGCAGCGAAGGGAAAAGAGGGGTTACTATTGAGAATCTGATCAATGCAGGATTTCGAGATTGGCATAAGCTTATTTTGAGGGACGCAAATGACCAAGGGAAATTAGCTACAATTTTCAAATCAGAGAAAAGAGGCGAGATGGAAAAGGAGGGATACAGAATTCTTGGAAATTCTGGAGACCAGTGGAGTGATTTATTGGGTAGCTCAATGTCCATCCGCTCATTCAAGCTTCCCAATCCCATGTATCACATTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

266

Amino Acids

30.56

Weight (kDa)

5.44

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 44 - 265 3.2e-85 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 478
Acc36I ACCTGC 1 cut(s) 478
AccB1I GGYRCC 1 cut(s) 466
AccBSI CCGCTC 1 cut(s) 762
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 3 cut(s) 32, 89, 760
AcoI YGGCCR 2 cut(s) 86, 256
AcsI RAATTY 3 cut(s) 14, 702, 712
AfaI GTAC 2 cut(s) 104, 163
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 5 cut(s) 130, 323, 490, 661, 769
Alw21I GWGCWC 2 cut(s) 114, 150
Alw26I GTCTC 1 cut(s) 714
Ama87I CYCGRG 1 cut(s) 107
Aor13HI TCCGGA 1 cut(s) 217
AoxI GGCC 2 cut(s) 86, 256
ApeKI GCWGC 1 cut(s) 546
ApoI RAATTY 3 cut(s) 14, 702, 712
AspLEI GCGC 1 cut(s) 546
AsuC2I CCSGG 2 cut(s) 85, 260
AsuHPI GGTGA 2 cut(s) 244, 344
AvaI CYCGRG 1 cut(s) 107
BanI GGYRCC 1 cut(s) 466
BanII GRGCYC 2 cut(s) 123, 150
BbsI GAAGAC 1 cut(s) 215
Bbv12I GWGCWC 2 cut(s) 114, 150
BbvI GCAGC 1 cut(s) 558
BccI CCATC 3 cut(s) 329, 676, 764
BciVI GTATCC 1 cut(s) 689
BclI TGATCA 3 cut(s) 93, 427, 582
BcnI CCSGG 2 cut(s) 85, 260
BcoDI GTCTC 1 cut(s) 714
BfaI CTAG 2 cut(s) 44, 137
BfuAI ACCTGC 1 cut(s) 478
BfuI GTATCC 1 cut(s) 689
BisI GCNGC 2 cut(s) 89, 547
BlsI GCNGC 2 cut(s) 90, 548
Bme1390I CCNGG 2 cut(s) 85, 260
BmeT110I CYCGRG 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 2 cut(s) 85, 260
BmrI ACTGGG 1 cut(s) 549
BmsI GCATC 1 cut(s) 286
BmuI ACTGGG 1 cut(s) 549
BpiI GAAGAC 1 cut(s) 215
BpmI CTGGAG 3 cut(s) 190, 299, 738
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 2 cut(s) 85, 260
BsaI GGTCTC 1 cut(s) 714
BsaJI CCNNGG 4 cut(s) 83, 203, 403, 637
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 2 cut(s) 544, 724
BseAI TCCGGA 1 cut(s) 217
BseDI CCNNGG 4 cut(s) 83, 203, 403, 637
BseGI GGATG 1 cut(s) 756
BseLI CCNNNNNNNGG 1 cut(s) 130
BseNI ACTGG 2 cut(s) 544, 724
BseX3I CGGCCG 2 cut(s) 86, 256
BseXI GCAGC 1 cut(s) 558
BseYI CCCAGC 1 cut(s) 299
Bsh1285I CGRYCG 2 cut(s) 89, 259
BshFI GGCC 2 cut(s) 88, 258
BshNI GGYRCC 1 cut(s) 466
BsiEI CGRYCG 2 cut(s) 89, 259
BsiHKAI GWGCWC 2 cut(s) 114, 150
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 4 cut(s) 85, 218, 255, 259
BslFI GGGAC 1 cut(s) 638
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 714
BsmFI GGGAC 1 cut(s) 638
BsnI GGCC 2 cut(s) 88, 258
Bso31I GGTCTC 1 cut(s) 714
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 3 cut(s) 114, 123, 150
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 4 cut(s) 93, 274, 427, 582
Bsp19I CCATGG 2 cut(s) 203, 403
BspACI CCGC 3 cut(s) 32, 89, 760
BspANI GGCC 2 cut(s) 88, 258
BspEI TCCGGA 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 468
BspMI ACCTGC 1 cut(s) 478
BspQI GCTCTTC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 466
BspTNI GGTCTC 1 cut(s) 714
BsrBI CCGCTC 1 cut(s) 762
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 2 cut(s) 544, 724
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 4 cut(s) 83, 203, 403, 637
BssMI GATC 4 cut(s) 93, 274, 427, 582
BssT1I CCWWGG 3 cut(s) 203, 403, 637
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 3 cut(s) 138, 378, 495
BstC8I GCNNGC 1 cut(s) 114
BstDSI CCRYGG 2 cut(s) 203, 403
BstF5I GGATG 1 cut(s) 756
BstHHI GCGC 1 cut(s) 546
BstKTI GATC 4 cut(s) 96, 277, 430, 585
BstMAI GTCTC 1 cut(s) 714
BstMBI GATC 4 cut(s) 93, 274, 427, 582
BstMCI CGRYCG 2 cut(s) 89, 259
BstMWI GCNNNNNNNGC 2 cut(s) 118, 541
BstSCI CCNGG 2 cut(s) 83, 258
BstV1I GCAGC 1 cut(s) 558
BstV2I GAAGAC 1 cut(s) 215
BstXI CCANNNNNNTGG 1 cut(s) 410
BstZI CGGCCG 2 cut(s) 86, 256
BsuI GTATCC 1 cut(s) 689
BsuRI GGCC 2 cut(s) 88, 258
BtgI CCRYGG 2 cut(s) 203, 403
BtsCI GGATG 1 cut(s) 756
BtsIMutI CAGTG 3 cut(s) 157, 537, 731
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 1 cut(s) 546
Cfr10I RCCGGY 1 cut(s) 254
CseI GACGC 1 cut(s) 635
Csp6I GTAC 2 cut(s) 103, 162
CviAII CATG 4 cut(s) 204, 404, 463, 784
CviQI GTAC 2 cut(s) 103, 162
DpnI GATC 4 cut(s) 95, 276, 429, 584
DpnII GATC 4 cut(s) 93, 274, 427, 582
EaeI YGGCCR 2 cut(s) 86, 256
EagI CGGCCG 2 cut(s) 86, 256
Eam1104I CTCTTC 3 cut(s) 138, 378, 495
EarI CTCTTC 3 cut(s) 138, 378, 495
Ecl136II GAGCTC 1 cut(s) 148
EclXI CGGCCG 2 cut(s) 86, 256
Eco130I CCWWGG 3 cut(s) 203, 403, 637
Eco24I GRGCYC 2 cut(s) 123, 150
Eco31I GGTCTC 1 cut(s) 714
Eco52I CGGCCG 2 cut(s) 86, 256
Eco53kI GAGCTC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 148
EcoRI GAATTC 1 cut(s) 702
EcoT14I CCWWGG 3 cut(s) 203, 403, 637
EcoT38I GRGCYC 2 cut(s) 123, 150
ErhI CCWWGG 3 cut(s) 203, 403, 637
FaeI CATG 4 cut(s) 207, 407, 466, 787
FalI AAGNNNNNCTT 4 cut(s) 470, 502, 515, 547
FaqI GGGAC 1 cut(s) 638
FatI CATG 4 cut(s) 203, 403, 462, 783
FbaI TGATCA 3 cut(s) 93, 427, 582
Fnu4HI GCNGC 2 cut(s) 89, 547
FokI GGATG 1 cut(s) 743
FriOI GRGCYC 2 cut(s) 123, 150
Fsp4HI GCNGC 2 cut(s) 89, 547
FspBI CTAG 2 cut(s) 44, 137
GlaI GCGC 1 cut(s) 545
GluI GCNGC 2 cut(s) 89, 547
GsaI CCCAGC 1 cut(s) 303
GsuI CTGGAG 3 cut(s) 190, 299, 738
HaeIII GGCC 2 cut(s) 88, 258
HapII CCGG 4 cut(s) 85, 218, 255, 259
HgaI GACGC 1 cut(s) 635
HhaI GCGC 1 cut(s) 546
Hin1II CATG 4 cut(s) 207, 407, 466, 787
Hin6I GCGC 1 cut(s) 544
HinP1I GCGC 1 cut(s) 544
HindIII AAGCTT 2 cut(s) 611, 770
HinfI GANTC 3 cut(s) 199, 214, 577
HpaII CCGG 4 cut(s) 85, 218, 255, 259
HphI GGTGA 2 cut(s) 244, 344
Hpy188I TCNGA 2 cut(s) 582, 667
Hpy188III TCNNGA 7 cut(s) 10, 65, 218, 278, 454, 599, 717
HpyAV CCTTC 4 cut(s) 32, 235, 451, 545
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 2 cut(s) 436, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 541
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 4 cut(s) 207, 407, 466, 787
HspAI GCGC 1 cut(s) 544
Kpn2I TCCGGA 1 cut(s) 217
Ksp22I TGATCA 3 cut(s) 93, 427, 582
Kzo9I GATC 4 cut(s) 93, 274, 427, 582
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 1 cut(s) 558
LweI GCATC 1 cut(s) 286
MaeI CTAG 2 cut(s) 44, 137
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 2 cut(s) 250, 565
MalI GATC 4 cut(s) 95, 276, 429, 584
MbiI CCGCTC 1 cut(s) 762
MboI GATC 4 cut(s) 93, 274, 427, 582
MboII GAAGA 5 cut(s) 155, 220, 365, 377, 512
MhlI GDGCHC 3 cut(s) 114, 123, 150
MluCI AATT 6 cut(s) 14, 323, 644, 654, 702, 712
MroI TCCGGA 1 cut(s) 217
MseI TTAA 1 cut(s) 522
MslI CAYNNNNRTG 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 91
MspI CCGG 4 cut(s) 85, 218, 255, 259
MspR9I CCNGG 2 cut(s) 85, 260
MwoI GCNNNNNNNGC 2 cut(s) 118, 541
NciI CCSGG 2 cut(s) 85, 260
NcoI CCATGG 2 cut(s) 203, 403
NdeII GATC 4 cut(s) 93, 274, 427, 582
NlaIII CATG 4 cut(s) 207, 407, 466, 787
NlaIV GGNNCC 1 cut(s) 468
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 250
PaqCI CACCTGC 1 cut(s) 478
PciSI GCTCTTC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfeI GAWTC 3 cut(s) 199, 214, 577
PflFI GACNNNGTC 1 cut(s) 248
PkrI GCNGC 2 cut(s) 90, 548
Psp124BI GAGCTC 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 468
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 2 cut(s) 104, 163
RsaNI GTAC 2 cut(s) 103, 162
RseI CAYNNNNRTG 1 cut(s) 408
SacI GAGCTC 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 2 cut(s) 89, 547
Sau3AI GATC 4 cut(s) 93, 274, 427, 582
ScrFI CCNGG 2 cut(s) 85, 260
SduI GDGCHC 3 cut(s) 114, 123, 150
SfaNI GCATC 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 6 cut(s) 14, 323, 644, 654, 702, 712
SsiI CCGC 3 cut(s) 32, 89, 760
SspMI CTAG 2 cut(s) 44, 137
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 83, 258
StyI CCWWGG 3 cut(s) 203, 403, 637
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 1 cut(s) 252
TaqI TCGA 5 cut(s) 66, 99, 357, 453, 598
TasI AATT 6 cut(s) 14, 323, 644, 654, 702, 712
TauI GCSGC 1 cut(s) 91
TfiI GAWTC 3 cut(s) 199, 214, 577
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 3 cut(s) 164, 544, 731
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 546
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 513
TspGWI ACGGA 1 cut(s) 378
TspRI CASTG 3 cut(s) 164, 544, 731
Tth111I GACNNNGTC 1 cut(s) 248
XapI RAATTY 3 cut(s) 14, 702, 712
XspI CTAG 2 cut(s) 44, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.