Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001091

Physical Location & Seq

Genomic Coordinates Forward (+)

22562747 .. 22566781

Gene Structure 4035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31180.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGATCCACAGAATCCAGCTGAAAAGCGATCGTCTCTGCGGAATGACAAACAAAGTAGCATTGCAAAGAACAAGAGCAGCAAAGTCACACTGCAAGATATTCAAGTTGTCCAGAATTTGATTGAAAGGTGTCTGCAGTTGTATATGAGCAGAGATGAAGTTGTCAATACCCTCTTAGACCGTGCAAGGATTGAGCCTGAGTTTACAAACTTGGTATGGCAGAAACTGGAAGAAGAAAATGCAAAATTTTTCAAGGCCTACCACTTAAGGCTGAAGCTCAAAGATCAAATTGAAATGTATAACCAGTTGCTTGAGAAGCAATACCATCTGATGAAACAGCAAGAGCGTGCGGAGTTTGAGAGAGCTCCTGTGCAGAATGGTTATCCCAAAATCAATTACATGGGCATATCTGGTTGTCACGGAGTTAATGGAATACCTGCTCTAGGAAACTTCCACCATATCCAACAGAAGTGTGCGAAAGAAGGTCCAGCTGATACAGTACCTTTCTTCCCCGCTGGTGATATGAAGTTAGTGGGGGATTCAAGTCCTGTGGCATCAAATGGACAATTTCCCTTCACTCCTGAAACATCAGGGCTAGATCTGGATCTGGATACACCAGCACTTGACTCTGCATTTACTTCTGATATAGCAGACCTAGACCTAGAAAGGATGCGTCTTGGAGTGGATAGTCAAAACACATGTCCTGAGTCACTTCAACCATCATGGGATTTTGGCTTCTCTAACACCACTGAATGGCCAAACTTTCAAGATTTTGGACCAGTGGGAAACTGTTCAGGCTCAAAGTTTCAGCATTCTGAGTTGGACATTAACCTTGATTCCGCAGAGCACAATGACATGGCTGATGCCTTTCTTCTCGTTGACGGTCCACCTGGTCAAGGCACTCAACTGGAGGAATCAAAGCCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

310

Amino Acids

34.73

Weight (kDa)

4.86

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_thal_3526	PF09713	1 - 40	5.9e-16	Plant protein 1589 of unknown function (A_thal_3526)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46420 AT2G46420 AT2G46420 AT3G61700 AT3G61700 AT3G61700 AT3G61700
fragaria_vesca	FvH4_7g16290 FvH4_7g16290 FvH4_7g16290 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180
malus_domestica	MD01G1079500.v1.1 MD01G1216500.v1.1 MD07G1148300.v1.1 MD07G1286500.v1.1 MD12G1148300.v1.1
prunus_persica	Prupe.2G186600_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1
pyrus_communis	pycom01g10780 pycom01g22720 pycom07g14730 pycom07g25960
rosa_chinensis	RchiOBHm_Chr1g0359301 RchiOBHm_Chr1g0380221
rosa_laevigata	RLG00000026317 RLG00000027882
rosa_multiflora	Rmu_co8458617.1_g000001 Rmu_sc0001232.1_g000028 Rmu_sc0002689.1_g000001 Rmu_ssc0000135.1_g000052
rosa_roxburghii	Rroxscaffold_4G00279550 Rroxscaffold_4G00297130
rosa_rugosa	Rorug01G0269300 Rorug01G0269400 Rorug01G0419200
rosa_samantha	Rh1AG283300 Rh1AG444000 Rh1BG249500 Rh1BG399100 Rh1CG267400 Rh1CG412500 Rh1DG278400 Rh1DG429600
rosa_wichuraiana	Rw1G025150 Rw1G038560 Rw1G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	445
AccB7I	CCANNNNNTGG	1 cut(s)	753
AciI	CCGC	4 cut(s)	40, 350, 513, 840
AclWI	GGATC	2 cut(s)	12, 612
AcoI	YGGCCR	1 cut(s)	755
AcsI	RAATTY	2 cut(s)	115, 245
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	3 cut(s)	443, 753, 896
AflII	CTTAAG	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	698
AgsI	TTSAA	7 cut(s)	104, 125, 253, 293, 543, 716, 767
AjnI	CCWGG	1 cut(s)	889
AluBI	AGCT	4 cut(s)	20, 277, 365, 491
AluI	AGCT	4 cut(s)	20, 277, 365, 491
Alw21I	GWGCWC	2 cut(s)	367, 849
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	2 cut(s)	12, 612
AlwNI	CAGNNNCTG	1 cut(s)	226
AoxI	GGCC	2 cut(s)	255, 755
ApeKI	GCWGC	1 cut(s)	78
ApoI	RAATTY	2 cut(s)	115, 245
ArsI	GACNNNNNNTTYG	2 cut(s)	685, 717
Asp700I	GAANNNNTTC	1 cut(s)	790
AspS9I	GGNCC	3 cut(s)	485, 776, 884
AsuHPI	GGTGA	1 cut(s)	530
AvaII	GGWCC	3 cut(s)	485, 776, 884
BalI	TGGCCA	1 cut(s)	757
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	367
Bbv12I	GWGCWC	2 cut(s)	367, 849
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	2 cut(s)	333, 727
BciT130I	CCWGG	1 cut(s)	891
BciVI	GTATCC	1 cut(s)	604
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	4 cut(s)	443, 596, 656, 662
BfmI	CTRYAG	1 cut(s)	134
BfrI	CTTAAG	1 cut(s)	265
BfuAI	ACCTGC	1 cut(s)	445
BfuI	GTATCC	1 cut(s)	604
BglII	AGATCT	1 cut(s)	598
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	891
Bme18I	GGWCC	3 cut(s)	485, 776, 884
BmgT120I	GGNCC	3 cut(s)	485, 776, 884
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	891
BmsI	GCATC	3 cut(s)	563, 660, 853
BpmI	CTGGAG	1 cut(s)	929
BpuEI	CTTGAG	1 cut(s)	332
BsaBI	GATNNNNATC	1 cut(s)	603
Bsc4I	CCNNNNNNNGG	3 cut(s)	443, 753, 896
Bse1I	ACTGG	4 cut(s)	231, 304, 779, 912
Bse3DI	GCAATG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	891
BseGI	GGATG	1 cut(s)	675
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	3 cut(s)	443, 753, 896
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	3 cut(s)	189, 696, 807
BseNI	ACTGG	4 cut(s)	231, 304, 779, 912
BseXI	GCAGC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	392
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	257, 757
BsiEI	CGRYCG	1 cut(s)	32
BsiHKAI	GWGCWC	2 cut(s)	367, 849
BslI	CCNNNNNNNGG	3 cut(s)	443, 753, 896
BsmAI	GTCTC	1 cut(s)	39
BsmBI	CGTCTC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	811
BsnI	GGCC	2 cut(s)	257, 757
Bsp1286I	GDGCHC	2 cut(s)	367, 849
Bsp143I	GATC	5 cut(s)	4, 29, 283, 598, 604
BspACI	CCGC	4 cut(s)	40, 350, 513, 840
BspANI	GGCC	2 cut(s)	257, 757
BspCNI	CTCAG	3 cut(s)	190, 697, 808
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	138
BspMI	ACCTGC	1 cut(s)	445
BspPI	GGATC	2 cut(s)	12, 612
BspTI	CTTAAG	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	60
BsrI	ACTGG	4 cut(s)	231, 304, 779, 912
BssMI	GATC	5 cut(s)	4, 29, 283, 598, 604
Bst2UI	CCWGG	1 cut(s)	891
Bst4CI	ACNGT	4 cut(s)	182, 499, 791, 884
BstAFI	CTTAAG	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	4 cut(s)	175, 198, 705, 816
BstENI	CCTNNNNNAGG	2 cut(s)	441, 894
BstF5I	GGATG	1 cut(s)	675
BstKTI	GATC	5 cut(s)	7, 32, 286, 601, 607
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	5 cut(s)	4, 29, 283, 598, 604
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstNI	CCWGG	1 cut(s)	891
BstNSI	RCATGY	1 cut(s)	702
BstSCI	CCNGG	1 cut(s)	889
BstSFI	CTRYAG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	90
BstX2I	RGATCY	3 cut(s)	4, 598, 604
BstYI	RGATCY	3 cut(s)	4, 598, 604
BsuI	GTATCC	1 cut(s)	604
BsuRI	GGCC	2 cut(s)	257, 757
BtsCI	GGATG	1 cut(s)	675
BtsI	GCAGTG	1 cut(s)	89
BtsIMutI	CAGTG	3 cut(s)	89, 747, 786
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	348
CaiI	CAGNNNCTG	1 cut(s)	226
Cfr13I	GGNCC	3 cut(s)	485, 776, 884
CseI	GACGC	1 cut(s)	662
CsiI	ACCWGGT	1 cut(s)	889
Csp6I	GTAC	1 cut(s)	500
CspCI	CAANNNNNGTGG	2 cut(s)	531, 566
CviAII	CATG	4 cut(s)	400, 699, 723, 856
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	4 cut(s)	175, 198, 705, 816
DpnI	GATC	5 cut(s)	6, 31, 285, 600, 606
DpnII	GATC	5 cut(s)	4, 29, 283, 598, 604
EaeI	YGGCCR	1 cut(s)	755
Ecl136II	GAGCTC	1 cut(s)	365
Eco147I	AGGCCT	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	367
Eco47I	GGWCC	3 cut(s)	485, 776, 884
Eco53kI	GAGCTC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	365
EcoNI	CCTNNNNNAGG	2 cut(s)	441, 894
EcoRII	CCWGG	1 cut(s)	889
EcoT38I	GRGCYC	1 cut(s)	367
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	4 cut(s)	403, 702, 726, 859
FatI	CATG	4 cut(s)	399, 698, 722, 855
FauI	CCCGC	1 cut(s)	520
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	1 cut(s)	682
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	1 cut(s)	79
FspBI	CTAG	4 cut(s)	443, 596, 656, 662
GluI	GCNGC	1 cut(s)	79
GsuI	CTGGAG	1 cut(s)	929
HaeIII	GGCC	2 cut(s)	257, 757
HgaI	GACGC	1 cut(s)	662
Hin1II	CATG	4 cut(s)	403, 702, 726, 859
HincII	GTYRAC	1 cut(s)	880
HindII	GTYRAC	1 cut(s)	880
HinfI	GANTC	6 cut(s)	13, 539, 626, 707, 836, 914
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	3 cut(s)	204, 880, 887
Hpy188I	TCNGA	3 cut(s)	330, 643, 817
Hpy188III	TCNNGA	6 cut(s)	112, 581, 602, 608, 704, 767
Hpy8I	GTNNAC	3 cut(s)	204, 880, 887
HpyAV	CCTTC	2 cut(s)	476, 583
HpyCH4III	ACNGT	4 cut(s)	182, 499, 791, 884
HpyCH4V	TGCA	7 cut(s)	65, 94, 136, 185, 242, 373, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	4 cut(s)	175, 198, 705, 816
Hsp92II	CATG	4 cut(s)	403, 702, 726, 859
Kzo9I	GATC	5 cut(s)	4, 29, 283, 598, 604
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	3 cut(s)	563, 660, 853
MabI	ACCWGGT	1 cut(s)	889
MaeI	CTAG	4 cut(s)	443, 596, 656, 662
MaeIII	GTNAC	3 cut(s)	85, 416, 708
MalI	GATC	5 cut(s)	6, 31, 285, 600, 606
MboI	GATC	5 cut(s)	4, 29, 283, 598, 604
MboII	GAAGA	4 cut(s)	242, 245, 499, 863
MflI	RGATCY	3 cut(s)	4, 598, 604
MhlI	GDGCHC	2 cut(s)	367, 849
MlsI	TGGCCA	1 cut(s)	757
MluCI	AATT	5 cut(s)	115, 245, 288, 394, 566
MluNI	TGGCCA	1 cut(s)	757
MlyI	GAGTC	2 cut(s)	620, 716
MmeI	TCCRAC	2 cut(s)	487, 801
MnlI	CCTC	2 cut(s)	182, 904
Mox20I	TGGCCA	1 cut(s)	757
MroXI	GAANNNNTTC	1 cut(s)	790
MscI	TGGCCA	1 cut(s)	757
MseI	TTAA	3 cut(s)	266, 426, 828
Msp20I	TGGCCA	1 cut(s)	757
MspA1I	CMGCKG	3 cut(s)	20, 491, 515
MspCI	CTTAAG	1 cut(s)	265
MspR9I	CCNGG	1 cut(s)	891
Mva1269I	GAATGC	1 cut(s)	811
MvaI	CCWGG	1 cut(s)	891
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeII	GATC	5 cut(s)	4, 29, 283, 598, 604
NlaIII	CATG	4 cut(s)	403, 702, 726, 859
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	3 cut(s)	85, 416, 708
NspI	RCATGY	1 cut(s)	702
PceI	AGGCCT	1 cut(s)	257
PciI	ACATGT	1 cut(s)	698
PctI	GAATGC	1 cut(s)	811
PdmI	GAANNNNTTC	1 cut(s)	790
PfeI	GAWTC	4 cut(s)	13, 539, 836, 914
PflMI	CCANNNNNTGG	1 cut(s)	753
PkrI	GCNGC	1 cut(s)	80
Ple19I	CGATCG	1 cut(s)	32
PleI	GAGTC	2 cut(s)	620, 715
PpsI	GAGTC	2 cut(s)	620, 715
PscI	ACATGT	1 cut(s)	698
Psp124BI	GAGCTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	889
PspGI	CCWGG	1 cut(s)	889
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	485, 776, 884
PstI	CTGCAG	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	226
PsuI	RGATCY	3 cut(s)	4, 598, 604
PvuI	CGATCG	1 cut(s)	32
PvuII	CAGCTG	2 cut(s)	20, 491
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	367
SaqAI	TTAA	3 cut(s)	266, 426, 828
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	5 cut(s)	4, 29, 283, 598, 604
Sau96I	GGNCC	3 cut(s)	485, 776, 884
SchI	GAGTC	2 cut(s)	620, 716
ScrFI	CCNGG	1 cut(s)	891
SduI	GDGCHC	2 cut(s)	367, 849
SexAI	ACCWGGT	1 cut(s)	889
SfaNI	GCATC	3 cut(s)	563, 660, 853
SfcI	CTRYAG	1 cut(s)	134
SinI	GGWCC	3 cut(s)	485, 776, 884
SmlI	CTYRAG	2 cut(s)	265, 311
SmoI	CTYRAG	2 cut(s)	265, 311
Sse9I	AATT	5 cut(s)	115, 245, 288, 394, 566
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	4 cut(s)	40, 350, 513, 840
SspMI	CTAG	4 cut(s)	443, 596, 656, 662
SstI	GAGCTC	1 cut(s)	367
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	1 cut(s)	889
TaaI	ACNGT	4 cut(s)	182, 499, 791, 884
TasI	AATT	5 cut(s)	115, 245, 288, 394, 566
TfiI	GAWTC	4 cut(s)	13, 539, 836, 914
Tru1I	TTAA	3 cut(s)	266, 426, 828
Tru9I	TTAA	3 cut(s)	266, 426, 828
TscAI	CASTG	3 cut(s)	96, 754, 786
TseFI	GTSAC	3 cut(s)	85, 416, 708
TseI	GCWGC	1 cut(s)	78
Tsp45I	GTSAC	3 cut(s)	85, 416, 708
TspDTI	ATGAA	3 cut(s)	171, 347, 539
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	3 cut(s)	96, 754, 786
Van91I	CCANNNNNTGG	1 cut(s)	753
Vha464I	CTTAAG	1 cut(s)	265
VpaK11BI	GGWCC	3 cut(s)	485, 776, 884
XagI	CCTNNNNNAGG	2 cut(s)	441, 894
XapI	RAATTY	2 cut(s)	115, 245
XceI	RCATGY	1 cut(s)	702
XmnI	GAANNNNTTC	1 cut(s)	790
XspI	CTAG	4 cut(s)	443, 596, 656, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.