Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001091

Physical Location & Seq

Genomic Coordinates Forward (+)

13987461 .. 13992605

Gene Structure 5145 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g16290.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGAAGACGTTACAGAGTGGGAAAGAAATACAATCTTCAAACCAAGCTATACATGATACACAAGGTGACCAATTGAAAAACCAAACAAATGAGGCTCCTGGTACTGATTCAGCTTCAATATCATCTTCAGGCAATGACAACAAGAAAGTATCACGCCAAGATATAGAACTTGTCCAGAATCTAATAGAGCGGTGTTTACAATTATACATGAATAGAGATGAGGTAGTCAAGACTCTCTTGACCCGCGCAAGAATAGATCCTGGATTTACCACTTTGGTATGGCAGAAGTTGGAAGAAGAAAATGCTGACTTTTTCAGGGCCTATTACATCAGGCTAAAATTGAAGAAACAAATAATCCTGTTTAATCATTTACTGGAGCATCACTGTCATCTGTCGAAGTATCATCCCATGCATCCAAAGGTTCCTTTGGCACCTATACAGAATGGGATTCATCCCATGCCTGTTAACAACTTACCTATGGGATACCCTGTGCTTCAGCAACCTCCAATGCCAGCAGCAGGTCAACCCCATATTGATTCCATGGGAATATCTAACTGTCATGTAGTTAATGGAGTCCCTGCACCAAGCAATTACCATCCAATTCGGATGAATTCTGGGAATGATATGGTGATGGACTGCAGTAGTGCTGATGTGGTTCCTGTGATTCCACCAAACAGCATGTCATCCATGTCCGAGATTCCTGTAAGTCCTACATCAGTTGCATCCAGTGGTCATTTCCCCTTCACGGCGTCAGATATATCAGGAATGGGAGTAGACACATCGGCACTTGATACAACATTTACATCTGATGTGGCAAGTAATGGGTTGCAGCTTGGACCTGATGGTGGGGGTGGCAGATCTCTGGATCAGATCCAGTGGAATTTCAGCCTTTCAGATCTTACAGCAGATTTGTCGAACTTAGGAGATTTAGGAGCCTTGGGAAACTATGATGGCTCCCCCTTTCTGGCCTCTGATTCTGAAATTTTACTCGACTCTCCCGAGCAAGAGGATATAGAGGAATTCTTTGTTGATTCTGTCCCCGAGCAAGGTACTCAATCAGATGAGGAGAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

359

Amino Acids

39.02

Weight (kDa)

4.69

Isoelectric Point (pI)

61.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_thal_3526	PF09713	58 - 109	2.1e-25	Plant protein 1589 of unknown function (A_thal_3526)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46420 AT2G46420 AT2G46420 AT3G61700 AT3G61700 AT3G61700 AT3G61700
fragaria_vesca	FvH4_7g16290 FvH4_7g16290 FvH4_7g16290 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180
malus_domestica	MD01G1079500.v1.1 MD01G1216500.v1.1 MD07G1148300.v1.1 MD07G1286500.v1.1 MD12G1148300.v1.1
prunus_persica	Prupe.2G186600_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1
pyrus_communis	pycom01g10780 pycom01g22720 pycom07g14730 pycom07g25960
rosa_chinensis	RchiOBHm_Chr1g0359301 RchiOBHm_Chr1g0380221
rosa_laevigata	RLG00000026317 RLG00000027882
rosa_multiflora	Rmu_co8458617.1_g000001 Rmu_sc0001232.1_g000028 Rmu_sc0002689.1_g000001 Rmu_ssc0000135.1_g000052
rosa_roxburghii	Rroxscaffold_4G00279550 Rroxscaffold_4G00297130
rosa_rugosa	Rorug01G0269300 Rorug01G0269400 Rorug01G0419200
rosa_samantha	Rh1AG283300 Rh1AG444000 Rh1BG249500 Rh1BG399100 Rh1CG267400 Rh1CG412500 Rh1DG278400 Rh1DG429600
rosa_wichuraiana	Rw1G025150 Rw1G038560 Rw1G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	430
AccBSI	CCGCTC	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	774
AccII	CGCG	1 cut(s)	246
AciI	CCGC	2 cut(s)	190, 244
AclWI	GGATC	3 cut(s)	251, 865, 873
AcsI	RAATTY	4 cut(s)	610, 880, 981, 1019
AcuI	CTGAAG	2 cut(s)	111, 479
AcyI	GRCGYC	1 cut(s)	749
AdeI	CACNNNGTG	1 cut(s)	65
AfaI	GTAC	2 cut(s)	103, 1051
AfiI	CCNNNNNNNGG	5 cut(s)	518, 745, 845, 964, 1046
AgsI	TTSAA	4 cut(s)	39, 76, 117, 343
AjnI	CCWGG	2 cut(s)	97, 259
AluBI	AGCT	3 cut(s)	47, 113, 832
AluI	AGCT	3 cut(s)	47, 113, 832
AlwI	GGATC	3 cut(s)	251, 865, 873
Ama87I	CYCGRG	2 cut(s)	998, 1040
AoxI	GGCC	2 cut(s)	318, 966
ApeKI	GCWGC	2 cut(s)	515, 829
ApoI	RAATTY	4 cut(s)	610, 880, 981, 1019
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	2 cut(s)	318, 836
AsuHPI	GGTGA	2 cut(s)	77, 640
AvaI	CYCGRG	2 cut(s)	998, 1040
AvaII	GGWCC	1 cut(s)	836
BanI	GGYRCC	1 cut(s)	430
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	527, 841
BccI	CCATC	4 cut(s)	603, 625, 836, 944
BceAI	ACGGC	1 cut(s)	762
BcgI	CGANNNNNNTGC	2 cut(s)	894, 928
BciT130I	CCWGG	2 cut(s)	99, 261
BciVI	GTATCC	1 cut(s)	476
BfaI	CTAG	1 cut(s)	1075
BfmI	CTRYAG	1 cut(s)	637
BfuAI	ACCTGC	1 cut(s)	509
BfuI	GTATCC	1 cut(s)	476
BglII	AGATCT	2 cut(s)	857, 895
BisI	GCNGC	2 cut(s)	516, 830
BlsI	GCNGC	2 cut(s)	517, 831
Bme1390I	CCNGG	2 cut(s)	99, 261
Bme18I	GGWCC	1 cut(s)	836
BmeT110I	CYCGRG	2 cut(s)	998, 1040
BmgT120I	GGNCC	2 cut(s)	318, 836
BmiI	GGNNCC	6 cut(s)	96, 423, 432, 657, 934, 955
BmrFI	CCNGG	2 cut(s)	99, 261
BmsI	GCATC	3 cut(s)	388, 421, 731
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	749
BsaJI	CCNNGG	2 cut(s)	540, 936
Bsc4I	CCNNNNNNNGG	5 cut(s)	518, 745, 845, 964, 1046
Bse1I	ACTGG	3 cut(s)	378, 726, 874
Bse3DI	GCAATG	1 cut(s)	139
BseBI	CCWGG	2 cut(s)	99, 261
BseDI	CCNNGG	2 cut(s)	540, 936
BseGI	GGATG	7 cut(s)	403, 412, 451, 595, 612, 683, 722
BseLI	CCNNNNNNNGG	5 cut(s)	518, 745, 845, 964, 1046
BseMI	GCAATG	1 cut(s)	139
BseNI	ACTGG	3 cut(s)	378, 726, 874
BseXI	GCAGC	2 cut(s)	527, 841
BsgI	GTGCAG	1 cut(s)	564
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	320, 968
BshNI	GGYRCC	1 cut(s)	430
BsiHKCI	CYCGRG	2 cut(s)	998, 1040
BslFI	GGGAC	2 cut(s)	560, 1022
BslI	CCNNNNNNNGG	5 cut(s)	518, 745, 845, 964, 1046
BsmFI	GGGAC	2 cut(s)	560, 1022
BsnI	GGCC	2 cut(s)	320, 968
BsoBI	CYCGRG	2 cut(s)	998, 1040
Bsp143I	GATC	5 cut(s)	256, 857, 865, 870, 895
Bsp19I	CCATGG	1 cut(s)	540
BspACI	CCGC	2 cut(s)	190, 244
BspANI	GGCC	2 cut(s)	320, 968
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	6 cut(s)	96, 423, 432, 657, 934, 955
BspMAI	CTGCAG	1 cut(s)	641
BspMI	ACCTGC	1 cut(s)	509
BspPI	GGATC	3 cut(s)	251, 865, 873
BspT107I	GGYRCC	1 cut(s)	430
BsrBI	CCGCTC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	3 cut(s)	378, 726, 874
BssECI	CCNNGG	2 cut(s)	540, 936
BssMI	GATC	5 cut(s)	256, 857, 865, 870, 895
BssNI	GRCGYC	1 cut(s)	749
BssT1I	CCWWGG	2 cut(s)	540, 936
Bst2UI	CCWGG	2 cut(s)	99, 261
Bst4CI	ACNGT	2 cut(s)	386, 557
BstACI	GRCGYC	1 cut(s)	749
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	1 cut(s)	919
BstDSI	CCRYGG	1 cut(s)	540
BstEII	GGTNACC	1 cut(s)	65
BstF5I	GGATG	7 cut(s)	403, 412, 451, 595, 612, 683, 722
BstFNI	CGCG	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	5 cut(s)	259, 860, 868, 873, 898
BstMBI	GATC	5 cut(s)	256, 857, 865, 870, 895
BstNI	CCWGG	2 cut(s)	99, 261
BstNSI	RCATGY	1 cut(s)	682
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	97, 259
BstSFI	CTRYAG	1 cut(s)	637
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	527, 841
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	4 cut(s)	256, 857, 870, 895
BstYI	RGATCY	4 cut(s)	256, 857, 870, 895
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	2 cut(s)	320, 968
BtgI	CCRYGG	1 cut(s)	540
BtsCI	GGATG	7 cut(s)	403, 412, 451, 595, 612, 683, 722
BtsIMutI	CAGTG	3 cut(s)	382, 733, 881
BveI	ACCTGC	1 cut(s)	509
Cac8I	GCNNGC	1 cut(s)	513
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	318, 836
CseI	GACGC	1 cut(s)	738
Csp6I	GTAC	2 cut(s)	102, 1050
CviAII	CATG	8 cut(s)	53, 208, 409, 457, 541, 560, 679, 688
CviQI	GTAC	2 cut(s)	102, 1050
DdeI	CTNAG	1 cut(s)	919
DpnI	GATC	5 cut(s)	258, 859, 867, 872, 897
DpnII	GATC	5 cut(s)	256, 857, 865, 870, 895
DraIII	CACNNNGTG	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	540, 936
Eco47I	GGWCC	1 cut(s)	836
Eco57I	CTGAAG	2 cut(s)	111, 479
Eco88I	CYCGRG	2 cut(s)	998, 1040
Eco91I	GGTNACC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	318
EcoO65I	GGTNACC	1 cut(s)	65
EcoRI	GAATTC	2 cut(s)	610, 1019
EcoRII	CCWGG	2 cut(s)	97, 259
EcoT14I	CCWWGG	2 cut(s)	540, 936
EcoT22I	ATGCAT	1 cut(s)	414
ErhI	CCWWGG	2 cut(s)	540, 936
FaeI	CATG	8 cut(s)	56, 211, 412, 460, 544, 563, 682, 691
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FaqI	GGGAC	2 cut(s)	560, 1022
FatI	CATG	8 cut(s)	52, 207, 408, 456, 540, 559, 678, 687
FauI	CCCGC	1 cut(s)	251
FblI	GTMKAC	1 cut(s)	774
Fnu4HI	GCNGC	2 cut(s)	516, 830
FokI	GGATG	7 cut(s)	390, 399, 438, 582, 619, 670, 709
Fsp4HI	GCNGC	2 cut(s)	516, 830
FspBI	CTAG	1 cut(s)	1075
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	2 cut(s)	516, 830
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	2 cut(s)	320, 968
HgaI	GACGC	1 cut(s)	738
HhaI	GCGC	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	749
Hin1II	CATG	8 cut(s)	56, 211, 412, 460, 544, 563, 682, 691
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HincII	GTYRAC	2 cut(s)	466, 524
HindII	GTYRAC	2 cut(s)	466, 524
HpaI	GTTAAC	1 cut(s)	466
HphI	GGTGA	2 cut(s)	77, 640
Hpy166II	GTNNAC	4 cut(s)	197, 466, 524, 775
Hpy188I	TCNGA	9 cut(s)	606, 694, 754, 808, 870, 895, 973, 979, 1060
Hpy188III	TCNNGA	6 cut(s)	175, 229, 238, 762, 863, 998
Hpy8I	GTNNAC	4 cut(s)	197, 466, 524, 775
HpyAV	CCTTC	1 cut(s)	751
HpyCH4III	ACNGT	2 cut(s)	386, 557
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	5 cut(s)	412, 581, 639, 722, 829
HpyF3I	CTNAG	1 cut(s)	919
HpySE526I	ACGT	1 cut(s)	8
Hsp92I	GRCGYC	1 cut(s)	749
Hsp92II	CATG	8 cut(s)	56, 211, 412, 460, 544, 563, 682, 691
HspAI	GCGC	1 cut(s)	246
KspAI	GTTAAC	1 cut(s)	466
Kzo9I	GATC	5 cut(s)	256, 857, 865, 870, 895
LmnI	GCTCC	4 cut(s)	100, 376, 932, 959
Lsp1109I	GCAGC	2 cut(s)	527, 841
LweI	GCATC	3 cut(s)	388, 421, 731
MaeI	CTAG	1 cut(s)	1075
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	2 cut(s)	9, 65
MalI	GATC	5 cut(s)	258, 859, 867, 872, 897
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	5 cut(s)	256, 857, 865, 870, 895
MboII	GAAGA	6 cut(s)	16, 27, 117, 305, 308, 355
MfeI	CAATTG	1 cut(s)	71
MflI	RGATCY	4 cut(s)	256, 857, 870, 895
MluCI	AATT	9 cut(s)	71, 200, 338, 589, 600, 610, 880, 981, 1019
MlyI	GAGTC	3 cut(s)	226, 582, 986
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	7 cut(s)	85, 214, 513, 979, 1000, 1009, 1057
Mph1103I	ATGCAT	1 cut(s)	414
MseI	TTAA	3 cut(s)	363, 465, 567
MspR9I	CCNGG	2 cut(s)	99, 261
MunI	CAATTG	1 cut(s)	71
MvaI	CCWGG	2 cut(s)	99, 261
MvnI	CGCG	1 cut(s)	246
NcoI	CCATGG	1 cut(s)	540
NdeII	GATC	5 cut(s)	256, 857, 865, 870, 895
NlaIII	CATG	8 cut(s)	56, 211, 412, 460, 544, 563, 682, 691
NlaIV	GGNNCC	6 cut(s)	96, 423, 432, 657, 934, 955
NmuCI	GTSAC	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	1 cut(s)	682
PcsI	WCGNNNNNNNCGW	1 cut(s)	996
PfeI	GAWTC	8 cut(s)	107, 178, 448, 536, 664, 697, 974, 1031
PfoI	TCCNGGA	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	517, 831
PleI	GAGTC	3 cut(s)	226, 581, 986
PpsI	GAGTC	3 cut(s)	226, 581, 986
Psp6I	CCWGG	2 cut(s)	97, 259
PspEI	GGTNACC	1 cut(s)	65
PspGI	CCWGG	2 cut(s)	97, 259
PspN4I	GGNNCC	6 cut(s)	96, 423, 432, 657, 934, 955
PspPI	GGNCC	2 cut(s)	318, 836
PstI	CTGCAG	1 cut(s)	641
PsuI	RGATCY	4 cut(s)	256, 857, 870, 895
RsaI	GTAC	2 cut(s)	103, 1051
RsaNI	GTAC	2 cut(s)	102, 1050
SaqAI	TTAA	3 cut(s)	363, 465, 567
SatI	GCNGC	2 cut(s)	516, 830
Sau3AI	GATC	5 cut(s)	256, 857, 865, 870, 895
Sau96I	GGNCC	2 cut(s)	318, 836
SchI	GAGTC	3 cut(s)	226, 582, 986
ScrFI	CCNGG	2 cut(s)	99, 261
SfaNI	GCATC	3 cut(s)	388, 421, 731
SfcI	CTRYAG	1 cut(s)	637
SinI	GGWCC	1 cut(s)	836
Sse9I	AATT	9 cut(s)	71, 200, 338, 589, 600, 610, 880, 981, 1019
SsiI	CCGC	2 cut(s)	190, 244
SspMI	CTAG	1 cut(s)	1075
StyD4I	CCNGG	2 cut(s)	97, 259
StyI	CCWWGG	2 cut(s)	540, 936
TaaI	ACNGT	2 cut(s)	386, 557
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	3 cut(s)	395, 914, 990
TasI	AATT	9 cut(s)	71, 200, 338, 589, 600, 610, 880, 981, 1019
TfiI	GAWTC	8 cut(s)	107, 178, 448, 536, 664, 697, 974, 1031
Tru1I	TTAA	3 cut(s)	363, 465, 567
Tru9I	TTAA	3 cut(s)	363, 465, 567
TscAI	CASTG	3 cut(s)	389, 733, 881
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	2 cut(s)	515, 829
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	4 cut(s)	17, 224, 440, 623
TspRI	CASTG	3 cut(s)	389, 733, 881
VpaK11BI	GGWCC	1 cut(s)	836
XapI	RAATTY	4 cut(s)	610, 880, 981, 1019
XceI	RCATGY	1 cut(s)	682
XmiI	GTMKAC	1 cut(s)	774
XspI	CTAG	1 cut(s)	1075
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.