Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000135.1

Orthogroup ID

OG0001091

Physical Location & Seq

Genomic Coordinates Forward (+)

258149 .. 259322

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000135.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgaatagagaagaggtggttaagactctcttgactcgcgcaagaatagatcctggatttaccactttggtatggcagaagttggaagaagaaaatgctgactttttcagggcctattacataaggctaaaattgaagaaacaaatcatcctgtttaatcatctactggagcatcactgtcatctgtcgaagtatcatcccatgcatccaaaggttcctttggcacctatacagaatgggattcatcccatgcctgttaacaacttacctatgggataccctgtccttcagcaacctccaatgccagcagcaggtcaaccccatcttgattccatgggaatatctaactgtcatgtagttaatggagttcccgcaccgagcaatttccatccaattcggatgaattctgggaatgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

139

Amino Acids

15.87

Weight (kDa)

9.0

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46420 AT2G46420 AT2G46420 AT3G61700 AT3G61700 AT3G61700 AT3G61700
fragaria_vesca	FvH4_7g16290 FvH4_7g16290 FvH4_7g16290 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180
malus_domestica	MD01G1079500.v1.1 MD01G1216500.v1.1 MD07G1148300.v1.1 MD07G1286500.v1.1 MD12G1148300.v1.1
prunus_persica	Prupe.2G186600_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1
pyrus_communis	pycom01g10780 pycom01g22720 pycom07g14730 pycom07g25960
rosa_chinensis	RchiOBHm_Chr1g0359301 RchiOBHm_Chr1g0380221
rosa_laevigata	RLG00000026317 RLG00000027882
rosa_multiflora	Rmu_co8458617.1_g000001 Rmu_sc0001232.1_g000028 Rmu_sc0002689.1_g000001 Rmu_ssc0000135.1_g000052
rosa_roxburghii	Rroxscaffold_4G00279550 Rroxscaffold_4G00297130
rosa_rugosa	Rorug01G0269300 Rorug01G0269400 Rorug01G0419200
rosa_samantha	Rh1AG283300 Rh1AG444000 Rh1BG249500 Rh1BG399100 Rh1CG267400 Rh1CG412500 Rh1DG278400 Rh1DG429600
rosa_wichuraiana	Rw1G025150 Rw1G038560 Rw1G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	223
AccII	CGCG	1 cut(s)	39
AciI	CCGC	1 cut(s)	372
AclWI	GGATC	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	403
AcuI	CTGAAG	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	52
AlwI	GGATC	1 cut(s)	44
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	2 cut(s)	330, 396
BciT130I	CCWGG	1 cut(s)	54
BciVI	GTATCC	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	302
BfuI	GTATCC	1 cut(s)	269
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	2 cut(s)	216, 225
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	2 cut(s)	181, 214
BpmI	CTGGAG	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	6 cut(s)	147, 196, 205, 244, 388, 405
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	311
BsnI	GGCC	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	49
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	216, 225
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	179, 350
Bst6I	CTCTTC	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	6 cut(s)	147, 196, 205, 244, 388, 405
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	52
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	6 cut(s)	147, 196, 205, 244, 388, 405
BtsIMutI	CAGTG	1 cut(s)	175
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	306
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	111
CviAII	CATG	4 cut(s)	202, 250, 334, 353
CviJI	RGCY	2 cut(s)	113, 127
CviKI_1	RGCY	2 cut(s)	113, 127
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	111
EcoRI	GAATTC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	4 cut(s)	205, 253, 337, 356
FaiI	YATR	8 cut(s)	73, 122, 203, 230, 251, 272, 335, 354
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FatI	CATG	4 cut(s)	201, 249, 333, 352
FauI	CCCGC	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	6 cut(s)	134, 183, 192, 231, 375, 412
Fsp4HI	GCNGC	1 cut(s)	309
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	113
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	4 cut(s)	205, 253, 337, 356
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	2 cut(s)	259, 317
HindII	GTYRAC	2 cut(s)	259, 317
HinfI	GANTC	4 cut(s)	25, 34, 241, 329
HpaI	GTTAAC	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	259, 317
Hpy188I	TCNGA	1 cut(s)	399
Hpy188III	TCNNGA	2 cut(s)	31, 326
Hpy8I	GTNNAC	2 cut(s)	259, 317
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	2 cut(s)	179, 350
HpyCH4V	TGCA	1 cut(s)	205
Hsp92II	CATG	4 cut(s)	205, 253, 337, 356
HspAI	GCGC	1 cut(s)	39
KspAI	GTTAAC	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	169
Lsp1109I	GCAGC	1 cut(s)	320
LweI	GCATC	2 cut(s)	181, 214
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	4 cut(s)	23, 98, 101, 148
MflI	RGATCY	1 cut(s)	49
MluCI	AATT	4 cut(s)	131, 382, 393, 403
MlyI	GAGTC	2 cut(s)	19, 28
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	2 cut(s)	7, 306
Mph1103I	ATGCAT	1 cut(s)	207
MseI	TTAA	4 cut(s)	21, 156, 258, 360
MspR9I	CCNGG	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	4 cut(s)	205, 253, 337, 356
NlaIV	GGNNCC	2 cut(s)	216, 225
NsiI	ATGCAT	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	241, 329
PfoI	TCCNGGA	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	310
PleI	GAGTC	2 cut(s)	19, 28
PpsI	GAGTC	2 cut(s)	19, 28
Psp6I	CCWGG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	216, 225
PspPI	GGNCC	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	49
SaqAI	TTAA	4 cut(s)	21, 156, 258, 360
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	1 cut(s)	111
SchI	GAGTC	2 cut(s)	19, 28
ScrFI	CCNGG	1 cut(s)	54
SetI	ASST	6 cut(s)	18, 216, 229, 271, 298, 316
SfaNI	GCATC	2 cut(s)	181, 214
Sse9I	AATT	4 cut(s)	131, 382, 393, 403
SsiI	CCGC	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	52
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	179, 350
TaqI	TCGA	1 cut(s)	188
TasI	AATT	4 cut(s)	131, 382, 393, 403
TfiI	GAWTC	2 cut(s)	241, 329
Tru1I	TTAA	4 cut(s)	21, 156, 258, 360
Tru9I	TTAA	4 cut(s)	21, 156, 258, 360
TscAI	CASTG	1 cut(s)	182
TseI	GCWGC	1 cut(s)	308
TspDTI	ATGAA	3 cut(s)	17, 233, 416
TspRI	CASTG	1 cut(s)	182
XapI	RAATTY	1 cut(s)	403
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.