Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001091

Physical Location & Seq

Genomic Coordinates Forward (+)

16797241 .. 16800209

Gene Structure 2969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g14730.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAAGAACTTACAGAGCACGCAAGAAAATCAATCATCAACTCAAGTTTTACATGATTCACAAGGTGACCAAGTGAAAAACCAAAGTAATGAGGCTCCCGCAACAGATTCAGCTTCAGCATCCACTTCAGGCAATGATAACAAGAAAGTATCACGCCAAGATATTGAACTTGTCCAGAATCTAATAGAGCGGTGTTTACAATTATATATGAATAGAGATGAGGTAGTTAAAACGCTCTTGACTCGGGCAAGGATAGATCGTGGATTTACAACTTTGGTATGGCAGAAGTTGGAAGAAGAAAATGCTGACTTTTTCAGGGCCTATTACATAAGGCTAAAATTGAAAAAACAAATCCTCCTTTTCAATCATTTACTGGAACATCACTATCATCTCTTGAAGTATAATCCCATGCCTCCGAAGGTTCCTTTGGCCCCTATACAAAATGGGATCCATCCTATGCCTGTTAACAACTTACCTATGGGATACCCCGTCCTTCAGCAACCTCCAATGCCAGCAGCAGGTCAGCCCCATGTCGATTCCATGGGATGTGCAATATCTAACTGTCATGTAGTTAATGGAGTACCTGCACCAAGCAACTTTCATCCCATGCGGATGAATTCTGGGAATGATATTATGATGGACTGCAGTGGTGCTGATGTGGTTCCTGTCATTCCACCAAACAGCGCCATGTCACCCATATCGGAGATGCCTGTAAGTCCTACATCAGTTGCATCGAGTGGTCACTTCCCGTTCTCTGCTTCAGAAATATCTGGAATGGGAGTAGACACAGCACTTGATACACCATTTACATCTGATGTGGCAAGTTCTGTTGGATTGCAACTTGCACCTGATGGTGGAGCTGGAAATTCTCGGGATTCTTTGAGATCGCTGGACCAAATTCAGTGGAATTTCAGCTTATCAGATCTTACAGCAGATTTGTCAAACTTGGGAGATTTAGGAGCCTTAGGAAACTATCCCGGTTCCCCATTTCTAGCGTCTGATTCTGAAATTTTACTCGACTCCCCAGAGCCAGAGGATATAGTGGAGGAGTTCTTTGTTGATTCTGTACCCGGACCGCCATGCTCTCAGTCAGATGAGGAGAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

370

Amino Acids

40.11

Weight (kDa)

4.69

Isoelectric Point (pI)

59.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46420 AT2G46420 AT2G46420 AT3G61700 AT3G61700 AT3G61700 AT3G61700
fragaria_vesca	FvH4_7g16290 FvH4_7g16290 FvH4_7g16290 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180
malus_domestica	MD01G1079500.v1.1 MD01G1216500.v1.1 MD07G1148300.v1.1 MD07G1286500.v1.1 MD12G1148300.v1.1
prunus_persica	Prupe.2G186600_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1
pyrus_communis	pycom01g10780 pycom01g22720 pycom07g14730 pycom07g25960
rosa_chinensis	RchiOBHm_Chr1g0359301 RchiOBHm_Chr1g0380221
rosa_laevigata	RLG00000026317 RLG00000027882
rosa_multiflora	Rmu_co8458617.1_g000001 Rmu_sc0001232.1_g000028 Rmu_sc0002689.1_g000001 Rmu_ssc0000135.1_g000052
rosa_roxburghii	Rroxscaffold_4G00279550 Rroxscaffold_4G00297130
rosa_rugosa	Rorug01G0269300 Rorug01G0269400 Rorug01G0419200
rosa_samantha	Rh1AG283300 Rh1AG444000 Rh1BG249500 Rh1BG399100 Rh1CG267400 Rh1CG412500 Rh1DG278400 Rh1DG429600
rosa_wichuraiana	Rw1G025150 Rw1G038560 Rw1G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	509, 592
AccBSI	CCGCTC	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	783
AciI	CCGC	4 cut(s)	99, 190, 610, 1076
AclWI	GGATC	2 cut(s)	442, 455
AcsI	RAATTY	5 cut(s)	616, 865, 897, 907, 1008
AcuI	CTGAAG	4 cut(s)	99, 111, 479, 744
AdeI	CACNNNGTG	1 cut(s)	65
AfaI	GTAC	2 cut(s)	582, 1068
AfiI	CCNNNNNNNGG	2 cut(s)	518, 854
AgsI	TTSAA	4 cut(s)	167, 343, 364, 397
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	3 cut(s)	113, 860, 915
AluI	AGCT	3 cut(s)	113, 860, 915
Alw21I	GWGCWC	1 cut(s)	20
AlwI	GGATC	2 cut(s)	442, 455
Ama87I	CYCGRG	2 cut(s)	243, 870
AoxI	GGCC	2 cut(s)	318, 429
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	5 cut(s)	616, 865, 897, 907, 1008
AspLEI	GCGC	1 cut(s)	686
AspS9I	GGNCC	4 cut(s)	318, 430, 892, 1073
AsuC2I	CCSGG	2 cut(s)	978, 1071
AsuHPI	GGTGA	2 cut(s)	77, 684
AvaI	CYCGRG	2 cut(s)	243, 870
AvaII	GGWCC	2 cut(s)	892, 1073
AxyI	CCTNAGG	1 cut(s)	964
BamHI	GGATCC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	3 cut(s)	459, 631, 845
BciVI	GTATCC	1 cut(s)	476
BcnI	CCSGG	2 cut(s)	978, 1071
BfaI	CTAG	2 cut(s)	992, 1108
BfmI	CTRYAG	1 cut(s)	643
BfoI	RGCGCY	1 cut(s)	687
BfuAI	ACCTGC	2 cut(s)	509, 592
BfuI	GTATCC	1 cut(s)	476
BglII	AGATCT	1 cut(s)	922
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
Bme1390I	CCNGG	2 cut(s)	978, 1071
Bme18I	GGWCC	2 cut(s)	892, 1073
BmeT110I	CYCGRG	2 cut(s)	243, 870
BmgT120I	GGNCC	4 cut(s)	318, 430, 892, 1073
BmiI	GGNNCC	7 cut(s)	96, 423, 432, 449, 663, 961, 982
BmrFI	CCNGG	2 cut(s)	978, 1071
BmsI	GCATC	3 cut(s)	128, 696, 740
BpuEI	CTTGAG	1 cut(s)	27
BpuMI	CCSGG	2 cut(s)	978, 1071
BsaJI	CCNNGG	1 cut(s)	540
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 854
Bse1I	ACTGG	1 cut(s)	378
Bse21I	CCTNAGG	1 cut(s)	964
Bse3DI	GCAATG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	540
BseGI	GGATG	5 cut(s)	119, 451, 551, 601, 618
BseLI	CCNNNNNNNGG	2 cut(s)	518, 854
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	1100
BseNI	ACTGG	1 cut(s)	378
BseRI	GAGGAG	1 cut(s)	1061
BseXI	GCAGC	1 cut(s)	527
BsgI	GTGCAG	1 cut(s)	570
BshFI	GGCC	2 cut(s)	320, 431
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	2 cut(s)	243, 870
BsiSI	CCGG	2 cut(s)	978, 1071
BslI	CCNNNNNNNGG	2 cut(s)	518, 854
BsnI	GGCC	2 cut(s)	320, 431
BsoBI	CYCGRG	2 cut(s)	243, 870
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	4 cut(s)	256, 447, 884, 922
Bsp19I	CCATGG	1 cut(s)	540
BspACI	CCGC	4 cut(s)	99, 190, 610, 1076
BspANI	GGCC	2 cut(s)	320, 431
BspCNI	CTCAG	1 cut(s)	1099
BspLI	GGNNCC	7 cut(s)	96, 423, 432, 449, 663, 961, 982
BspMAI	CTGCAG	1 cut(s)	647
BspMI	ACCTGC	2 cut(s)	509, 592
BspPI	GGATC	2 cut(s)	442, 455
BsrBI	CCGCTC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	540
BssMI	GATC	4 cut(s)	256, 447, 884, 922
BssT1I	CCWWGG	1 cut(s)	540
Bst4CI	ACNGT	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	20, 513
BstDEI	CTNAG	2 cut(s)	964, 1086
BstDSI	CCRYGG	1 cut(s)	540
BstEII	GGTNACC	1 cut(s)	65
BstF5I	GGATG	5 cut(s)	119, 451, 551, 601, 618
BstH2I	RGCGCY	1 cut(s)	687
BstHHI	GCGC	1 cut(s)	686
BstKTI	GATC	4 cut(s)	259, 450, 887, 925
BstMBI	GATC	4 cut(s)	256, 447, 884, 922
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	976, 1069
BstSFI	CTRYAG	1 cut(s)	643
BstV1I	GCAGC	1 cut(s)	527
BstX2I	RGATCY	2 cut(s)	447, 922
BstYI	RGATCY	2 cut(s)	447, 922
Bsu36I	CCTNAGG	1 cut(s)	964
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	2 cut(s)	320, 431
BtgI	CCRYGG	1 cut(s)	540
BtsCI	GGATG	5 cut(s)	119, 451, 551, 601, 618
BtsI	GCAGTG	1 cut(s)	652
BtsIMutI	CAGTG	2 cut(s)	652, 908
BveI	ACCTGC	2 cut(s)	509, 592
Cac8I	GCNNGC	2 cut(s)	20, 513
CfoI	GCGC	1 cut(s)	686
Cfr13I	GGNCC	4 cut(s)	318, 430, 892, 1073
CpoI	CGGWCCG	1 cut(s)	1073
CseI	GACGC	1 cut(s)	984
Csp6I	GTAC	2 cut(s)	581, 1067
CspCI	CAANNNNNGTGG	2 cut(s)	884, 919
CspI	CGGWCCG	1 cut(s)	1073
CviAII	CATG	8 cut(s)	53, 409, 530, 541, 566, 607, 688, 1080
CviQI	GTAC	2 cut(s)	581, 1067
DdeI	CTNAG	2 cut(s)	964, 1086
DpnI	GATC	4 cut(s)	258, 449, 886, 924
DpnII	GATC	4 cut(s)	256, 447, 884, 922
DraIII	CACNNNGTG	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	540
Eco47I	GGWCC	2 cut(s)	892, 1073
Eco57I	CTGAAG	4 cut(s)	99, 111, 479, 744
Eco81I	CCTNAGG	1 cut(s)	964
Eco88I	CYCGRG	2 cut(s)	243, 870
Eco91I	GGTNACC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	318
EcoO65I	GGTNACC	1 cut(s)	65
EcoRI	GAATTC	1 cut(s)	616
EcoT14I	CCWWGG	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	8 cut(s)	56, 412, 533, 544, 569, 610, 691, 1083
FatI	CATG	8 cut(s)	52, 408, 529, 540, 565, 606, 687, 1079
FauI	CCCGC	1 cut(s)	106
FblI	GTMKAC	1 cut(s)	783
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	5 cut(s)	106, 438, 558, 588, 625
Fsp4HI	GCNGC	1 cut(s)	516
FspBI	CTAG	2 cut(s)	992, 1108
GlaI	GCGC	1 cut(s)	685
GluI	GCNGC	1 cut(s)	516
HaeII	RGCGCY	1 cut(s)	687
HaeIII	GGCC	2 cut(s)	320, 431
HapII	CCGG	2 cut(s)	978, 1071
HgaI	GACGC	1 cut(s)	984
HhaI	GCGC	1 cut(s)	686
Hin1II	CATG	8 cut(s)	56, 412, 533, 544, 569, 610, 691, 1083
Hin6I	GCGC	1 cut(s)	684
HinP1I	GCGC	1 cut(s)	684
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	9 cut(s)	56, 107, 178, 241, 536, 875, 1001, 1019, 1061
HpaI	GTTAAC	1 cut(s)	466
HpaII	CCGG	2 cut(s)	978, 1071
HphI	GGTGA	2 cut(s)	77, 684
Hpy166II	GTNNAC	3 cut(s)	197, 466, 784
Hpy188I	TCNGA	8 cut(s)	417, 703, 763, 814, 922, 1000, 1006, 1093
Hpy188III	TCNNGA	5 cut(s)	175, 238, 394, 771, 872
Hpy8I	GTNNAC	3 cut(s)	197, 466, 784
HpyAV	CCTTC	2 cut(s)	412, 503
HpyCH4III	ACNGT	1 cut(s)	563
HpyCH4V	TGCA	6 cut(s)	551, 587, 645, 731, 838, 845
HpyF3I	CTNAG	2 cut(s)	964, 1086
Hsp92II	CATG	8 cut(s)	56, 412, 533, 544, 569, 610, 691, 1083
HspAI	GCGC	1 cut(s)	684
KspAI	GTTAAC	1 cut(s)	466
Kzo9I	GATC	4 cut(s)	256, 447, 884, 922
LmnI	GCTCC	3 cut(s)	100, 857, 959
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	3 cut(s)	128, 696, 740
MaeI	CTAG	2 cut(s)	992, 1108
MaeIII	GTNAC	3 cut(s)	65, 690, 740
MalI	GATC	4 cut(s)	258, 449, 886, 924
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	4 cut(s)	256, 447, 884, 922
MboII	GAAGA	3 cut(s)	16, 305, 308
MflI	RGATCY	2 cut(s)	447, 922
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	7 cut(s)	200, 338, 616, 865, 897, 907, 1008
MlyI	GAGTC	2 cut(s)	235, 1013
MmeI	TCCRAC	2 cut(s)	270, 811
MnlI	CCTC	8 cut(s)	85, 214, 365, 423, 513, 1027, 1039, 1090
MseI	TTAA	3 cut(s)	228, 465, 573
MslI	CAYNNNNRTG	1 cut(s)	611
MspI	CCGG	2 cut(s)	978, 1071
MspR9I	CCNGG	2 cut(s)	978, 1071
NciI	CCSGG	2 cut(s)	978, 1071
NcoI	CCATGG	1 cut(s)	540
NdeII	GATC	4 cut(s)	256, 447, 884, 922
NlaIII	CATG	8 cut(s)	56, 412, 533, 544, 569, 610, 691, 1083
NlaIV	GGNNCC	7 cut(s)	96, 423, 432, 449, 663, 961, 982
NmuCI	GTSAC	3 cut(s)	65, 690, 740
PfeI	GAWTC	7 cut(s)	56, 107, 178, 536, 875, 1001, 1061
PkrI	GCNGC	1 cut(s)	517
PleI	GAGTC	2 cut(s)	235, 1013
PpsI	GAGTC	2 cut(s)	235, 1013
PspEI	GGTNACC	1 cut(s)	65
PspN4I	GGNNCC	7 cut(s)	96, 423, 432, 449, 663, 961, 982
PspPI	GGNCC	4 cut(s)	318, 430, 892, 1073
PstI	CTGCAG	1 cut(s)	647
PsuI	RGATCY	2 cut(s)	447, 922
RsaI	GTAC	2 cut(s)	582, 1068
RsaNI	GTAC	2 cut(s)	581, 1067
RseI	CAYNNNNRTG	1 cut(s)	611
Rsr2I	CGGWCCG	1 cut(s)	1073
RsrII	CGGWCCG	1 cut(s)	1073
SaqAI	TTAA	3 cut(s)	228, 465, 573
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	4 cut(s)	256, 447, 884, 922
Sau96I	GGNCC	4 cut(s)	318, 430, 892, 1073
SchI	GAGTC	2 cut(s)	235, 1013
ScrFI	CCNGG	2 cut(s)	978, 1071
SduI	GDGCHC	1 cut(s)	20
SfaNI	GCATC	3 cut(s)	128, 696, 740
SfcI	CTRYAG	1 cut(s)	643
SinI	GGWCC	2 cut(s)	892, 1073
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
Sse9I	AATT	7 cut(s)	200, 338, 616, 865, 897, 907, 1008
SsiI	CCGC	4 cut(s)	99, 190, 610, 1076
SspMI	CTAG	2 cut(s)	992, 1108
StyD4I	CCNGG	2 cut(s)	976, 1069
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	1 cut(s)	563
TaqI	TCGA	3 cut(s)	534, 734, 1017
TasI	AATT	7 cut(s)	200, 338, 616, 865, 897, 907, 1008
TfiI	GAWTC	7 cut(s)	56, 107, 178, 536, 875, 1001, 1061
Tru1I	TTAA	3 cut(s)	228, 465, 573
Tru9I	TTAA	3 cut(s)	228, 465, 573
TscAI	CASTG	2 cut(s)	652, 908
TseFI	GTSAC	3 cut(s)	65, 690, 740
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	3 cut(s)	65, 690, 740
TspDTI	ATGAA	4 cut(s)	17, 224, 590, 629
TspRI	CASTG	2 cut(s)	652, 908
VpaK11BI	GGWCC	2 cut(s)	892, 1073
XapI	RAATTY	5 cut(s)	616, 865, 897, 907, 1008
XmiI	GTMKAC	1 cut(s)	783
XspI	CTAG	2 cut(s)	992, 1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.