Rh1BG399100

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001091
Physical Location & Seq
Forward (+)
52288202 .. 52299593
11392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG399100.1

Sequence Viewer

Length: 1230 bp
ATGGATCCACAGAATCCAGCAGAAAAGCGATTCTCACTGCGCAATGACAAACAAAGTAGCATTGCAAAGAACAAGAGCAGCAAAGTCACACTTCAAGATATTCAAGTTGTCCAGAATTTGATTGAAAGGTGTCTGCAGTTGTATATGAACAGAGATGAAGTCATCAATACCCTCTTAGATCGTGCTAGGATTGAGCCTGAGTTTACAAAACTGGTATGGCAGAAACTGGAAGAAGAAAATGCAGAATTTTTCAAGGCCTACCACCTAAGGCTAAAGCTCAAAGATCAAATTCATATGTATAACCGGTTGCTTGAGCAGCAATACCATCTGATGAAACAGCAAGAGCGTGCAGAGTTTGAGATAGCTCCTGTGCAGAATGGAATGCATCACATGCCTGGTTATTTCGGGATCAATTCCATGGGCACCATATCTGGTTGTCATGGAGTTAATGGAATACCTGCTCCAGGAAACTTCCACCGTATGCAACATAAGTGTGCGAAAGAAAGTCCAGCTAATACAGTACCTTTCTTCCCTGCTGGTGATATGAAGTTAGATGGGGCTTCAAGTCCTGTAGCAGTGGCATTGAATGGACAATTTTCCTTCACTCCTGAAACATCAGGGCTAAATCTGGACACACCAGTGCTTGACTCTGCATTTACTTCTGATATAGCAAATCTAGAGAGGTTGCGTCTTGGAGCAGATGGTCAGAACACATGTCCTGAGGAGTCACTTCAATCATCGGATCAGATGACTTGGGATTTTGGCTTCTCTAATACCGCTGAATGGTCAAACTTTCAAGAGTTTGGACCAGCGGGGAACTATTCAGGCTCAGAGTTTCAACCTTCTCAGTTGGATATTAATCTTGATTCTGCAGAGCAAAATGACATGGTTGATGGGTTCCTTCTCGATGGTCCACCTGGTCAAGGCACTCAACCTGCAGAGGAAACTAAGCCAAATTGCGGCTTGAGCCGAGACCATGATATCAAAGAAGATGGCTTTGTTATCCGCAACTCAGCAAGGAAAAATCCATCTATTGACATGGGGCTGGAGTTTAATAAGATTGCCAATTTCTTGAGTCGGTTCAAGTCAATCCTCAGCTTCATTGAGCTTGATAGCCTTAAGGTGTCTGCTGATGTGTGGTTCATTGCTGGCGTTGTTCTCATGGTATGCATGTCACTGGAGGTGCACAACTGGGTTCTGAACCCTCTTGGCATATATCAACCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

409

Amino Acids

45.93

Weight (kDa)

5.0

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 37 - 88 1.2e-25 Plant protein 1589 of unknown function (A_thal_3526)
UDPGP PF01704 335 - 387 3.4e-08 UTP--glucose-1-phosphate uridylyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 41
Acc36I ACCTGC 2 cut(s) 466, 943
AccB1I GGYRCC 1 cut(s) 422
AciI CCGC 4 cut(s) 777, 812, 960, 1006
AclWI GGATC 3 cut(s) 12, 416, 750
AcsI RAATTY 3 cut(s) 115, 245, 288
AfaI GTAC 1 cut(s) 522
AfiI CCNNNNNNNGG 4 cut(s) 464, 783, 923, 959
AflII CTTAAG 1 cut(s) 1118
AflIII ACRYGT 1 cut(s) 713
AgeI ACCGGT 1 cut(s) 303
AjnI CCWGG 3 cut(s) 394, 463, 916
AleI CACNNNNGTG 1 cut(s) 638
AluBI AGCT 5 cut(s) 277, 365, 512, 1098, 1108
AluI AGCT 5 cut(s) 277, 365, 512, 1098, 1108
Alw21I GWGCWC 1 cut(s) 1188
Alw26I GTCTC 1 cut(s) 966
Alw44I GTGCAC 1 cut(s) 1184
AlwI GGATC 3 cut(s) 12, 416, 750
AlwNI CAGNNNCTG 1 cut(s) 226
AoxI GGCC 1 cut(s) 255
ApaLI GTGCAC 1 cut(s) 1184
ApeKI GCWGC 2 cut(s) 78, 316
ApoI RAATTY 3 cut(s) 115, 245, 288
AseI ATTAAT 1 cut(s) 858
AsiGI ACCGGT 1 cut(s) 303
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 2 cut(s) 806, 911
AsuHPI GGTGA 1 cut(s) 551
AvaII GGWCC 2 cut(s) 806, 911
AxyI CCTNAGG 2 cut(s) 266, 720
BaeGI GKGCMC 2 cut(s) 425, 1188
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 422
Bbv12I GWGCWC 1 cut(s) 1188
BbvCI CCTCAGC 1 cut(s) 1094
BbvI GCAGC 2 cut(s) 90, 328
BccI CCATC 7 cut(s) 333, 548, 695, 887, 902, 986, 1036
BciT130I CCWGG 3 cut(s) 396, 465, 918
BcoDI GTCTC 1 cut(s) 966
BfaI CTAG 2 cut(s) 186, 677
BfmI CTRYAG 4 cut(s) 134, 570, 870, 936
BfrI CTTAAG 1 cut(s) 1118
BfuAI ACCTGC 2 cut(s) 466, 943
BisI GCNGC 3 cut(s) 79, 317, 961
BlsI GCNGC 3 cut(s) 80, 318, 962
Bme1390I CCNGG 3 cut(s) 396, 465, 918
Bme18I GGWCC 2 cut(s) 806, 911
BmgT120I GGNCC 2 cut(s) 806, 911
BmiI GGNNCC 3 cut(s) 6, 424, 899
BmrFI CCNGG 3 cut(s) 396, 465, 918
BmrI ACTGGG 1 cut(s) 1201
BmsI GCATC 1 cut(s) 394
BmuI ACTGGG 1 cut(s) 1201
BpmI CTGGAG 3 cut(s) 447, 1067, 1199
Bpu10I CCTNAGC 1 cut(s) 1094
BpuEI CTTGAG 3 cut(s) 332, 985, 1093
BsaBI GATNNNNATC 1 cut(s) 858
BsaI GGTCTC 1 cut(s) 966
BsaJI CCNNGG 1 cut(s) 417
BsaWI WCCGGW 1 cut(s) 303
Bsc4I CCNNNNNNNGG 4 cut(s) 464, 783, 923, 959
Bse118I RCCGGY 1 cut(s) 303
Bse1I ACTGG 5 cut(s) 216, 231, 638, 1182, 1196
Bse21I CCTNAGG 2 cut(s) 266, 720
Bse3DI GCAATG 3 cut(s) 49, 60, 1143
Bse8I GATNNNNATC 1 cut(s) 858
BseBI CCWGG 3 cut(s) 396, 465, 918
BseDI CCNNGG 1 cut(s) 417
BseJI GATNNNNATC 1 cut(s) 858
BseLI CCNNNNNNNGG 4 cut(s) 464, 783, 923, 959
BseMI GCAATG 3 cut(s) 49, 60, 1143
BseMII CTCAG 6 cut(s) 189, 711, 843, 860, 1026, 1108
BseNI ACTGG 5 cut(s) 216, 231, 638, 1182, 1196
BseRI GAGGAG 1 cut(s) 737
BseSI GKGCMC 2 cut(s) 425, 1188
BseXI GCAGC 2 cut(s) 90, 328
BsgI GTGCAG 2 cut(s) 369, 392
BshFI GGCC 1 cut(s) 257
BshNI GGYRCC 1 cut(s) 422
BshTI ACCGGT 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 1188
BsiSI CCGG 1 cut(s) 304
BslI CCNNNNNNNGG 4 cut(s) 464, 783, 923, 959
BsmAI GTCTC 1 cut(s) 966
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 1 cut(s) 257
Bso31I GGTCTC 1 cut(s) 966
Bsp1286I GDGCHC 2 cut(s) 425, 1188
Bsp143I GATC 5 cut(s) 4, 178, 283, 408, 742
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 4 cut(s) 777, 812, 960, 1006
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 6 cut(s) 190, 712, 842, 859, 1025, 1107
BspLI GGNNCC 3 cut(s) 6, 424, 899
BspMAI CTGCAG 3 cut(s) 138, 874, 940
BspMI ACCTGC 2 cut(s) 466, 943
BspPI GGATC 3 cut(s) 12, 416, 750
BspT107I GGYRCC 1 cut(s) 422
BspTI CTTAAG 1 cut(s) 1118
BspTNI GGTCTC 1 cut(s) 966
BsrDI GCAATG 3 cut(s) 49, 60, 1143
BsrFI RCCGGY 1 cut(s) 303
BsrI ACTGG 5 cut(s) 216, 231, 638, 1182, 1196
BssAI RCCGGY 1 cut(s) 303
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 5 cut(s) 4, 178, 283, 408, 742
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 3 cut(s) 396, 465, 918
Bst4CI ACNGT 2 cut(s) 479, 520
BstAFI CTTAAG 1 cut(s) 1118
BstAPI GCANNNNNTGC 1 cut(s) 391
BstC8I GCNNGC 2 cut(s) 348, 1150
BstDEI CTNAG 9 cut(s) 175, 198, 266, 720, 829, 846, 948, 1012, 1094
BstDSI CCRYGG 1 cut(s) 417
BstENI CCTNNNNNAGG 2 cut(s) 462, 921
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 5 cut(s) 7, 181, 286, 411, 745
BstMAI GTCTC 1 cut(s) 966
BstMBI GATC 5 cut(s) 4, 178, 283, 408, 742
BstMWI GCNNNNNNNGC 3 cut(s) 316, 391, 966
BstNI CCWGG 3 cut(s) 396, 465, 918
BstNSI RCATGY 3 cut(s) 394, 717, 1174
BstSCI CCNGG 3 cut(s) 394, 463, 916
BstSFI CTRYAG 4 cut(s) 134, 570, 870, 936
BstSLI GKGCMC 2 cut(s) 425, 1188
BstV1I GCAGC 2 cut(s) 90, 328
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 2 cut(s) 266, 720
BsuRI GGCC 1 cut(s) 257
BtgI CCRYGG 1 cut(s) 417
BtsI GCAGTG 2 cut(s) 35, 582
BtsIMutI CAGTG 4 cut(s) 35, 582, 645, 1175
BveI ACCTGC 2 cut(s) 466, 943
Cac8I GCNNGC 2 cut(s) 348, 1150
CaiI CAGNNNCTG 1 cut(s) 226
CfoI GCGC 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 303
Cfr13I GGNCC 2 cut(s) 806, 911
CseI GACGC 1 cut(s) 677
CsiI ACCWGGT 1 cut(s) 916
Csp6I GTAC 1 cut(s) 521
CspAI ACCGGT 1 cut(s) 303
CviAII CATG 9 cut(s) 391, 418, 440, 714, 886, 977, 1039, 1162, 1171
CviQI GTAC 1 cut(s) 521
DdeI CTNAG 9 cut(s) 175, 198, 266, 720, 829, 846, 948, 1012, 1094
DpnI GATC 5 cut(s) 6, 180, 285, 410, 744
DpnII GATC 5 cut(s) 4, 178, 283, 408, 742
Eco130I CCWWGG 1 cut(s) 417
Eco147I AGGCCT 1 cut(s) 257
Eco31I GGTCTC 1 cut(s) 966
Eco32I GATATC 1 cut(s) 982
Eco47I GGWCC 2 cut(s) 806, 911
Eco81I CCTNAGG 2 cut(s) 266, 720
EcoNI CCTNNNNNAGG 2 cut(s) 462, 921
EcoRII CCWGG 3 cut(s) 394, 463, 916
EcoRV GATATC 1 cut(s) 982
EcoT14I CCWWGG 1 cut(s) 417
EcoT22I ATGCAT 2 cut(s) 387, 1172
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 9 cut(s) 394, 421, 443, 717, 889, 980, 1042, 1165, 1174
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FatI CATG 9 cut(s) 390, 417, 439, 713, 885, 976, 1038, 1161, 1170
FauI CCCGC 1 cut(s) 805
FauNDI CATATG 1 cut(s) 294
Fnu4HI GCNGC 3 cut(s) 79, 317, 961
Fsp4HI GCNGC 3 cut(s) 79, 317, 961
FspBI CTAG 2 cut(s) 186, 677
FspI TGCGCA 1 cut(s) 41
GlaI GCGC 1 cut(s) 41
GluI GCNGC 3 cut(s) 79, 317, 961
GsuI CTGGAG 3 cut(s) 447, 1067, 1199
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 304
HgaI GACGC 1 cut(s) 677
HhaI GCGC 1 cut(s) 42
Hin1II CATG 9 cut(s) 394, 421, 443, 717, 889, 980, 1042, 1165, 1174
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HinfI GANTC 6 cut(s) 13, 30, 647, 725, 866, 1075
HpaII CCGG 1 cut(s) 304
HphI GGTGA 1 cut(s) 551
Hpy166II GTNNAC 3 cut(s) 204, 914, 1186
Hpy188I TCNGA 7 cut(s) 330, 664, 708, 742, 747, 832, 1200
Hpy8I GTNNAC 3 cut(s) 204, 914, 1186
HpyAV CCTTC 3 cut(s) 610, 852, 911
HpyCH4III ACNGT 2 cut(s) 479, 520
HpyF10VI GCNNNNNNNGC 3 cut(s) 316, 391, 966
HpyF3I CTNAG 9 cut(s) 175, 198, 266, 720, 829, 846, 948, 1012, 1094
Hsp92II CATG 9 cut(s) 394, 421, 443, 717, 889, 980, 1042, 1165, 1174
HspAI GCGC 1 cut(s) 40
Kzo9I GATC 5 cut(s) 4, 178, 283, 408, 742
LmnI GCTCC 3 cut(s) 370, 466, 695
Lsp1109I GCAGC 2 cut(s) 90, 328
LweI GCATC 1 cut(s) 394
MabI ACCWGGT 1 cut(s) 916
MaeI CTAG 2 cut(s) 186, 677
MaeIII GTNAC 3 cut(s) 85, 726, 1173
MalI GATC 5 cut(s) 6, 180, 285, 410, 744
MboI GATC 5 cut(s) 4, 178, 283, 408, 742
MboII GAAGA 4 cut(s) 242, 245, 520, 1001
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 425, 1188
MluCI AATT 7 cut(s) 115, 245, 288, 412, 593, 955, 1066
MlyI GAGTC 3 cut(s) 641, 734, 1084
MmeI TCCRAC 1 cut(s) 831
MnlI CCTC 7 cut(s) 182, 675, 715, 934, 1103, 1174, 1215
Mph1103I ATGCAT 2 cut(s) 387, 1172
MseI TTAA 4 cut(s) 447, 858, 1053, 1119
MslI CAYNNNNRTG 2 cut(s) 492, 638
MspA1I CMGCKG 2 cut(s) 779, 812
MspCI CTTAAG 1 cut(s) 1118
MspI CCGG 1 cut(s) 304
MspR9I CCNGG 3 cut(s) 396, 465, 918
Mva1269I GAATGC 1 cut(s) 387
MvaI CCWGG 3 cut(s) 396, 465, 918
MwoI GCNNNNNNNGC 3 cut(s) 316, 391, 966
NcoI CCATGG 1 cut(s) 417
NdeI CATATG 1 cut(s) 294
NdeII GATC 5 cut(s) 4, 178, 283, 408, 742
NlaIII CATG 9 cut(s) 394, 421, 443, 717, 889, 980, 1042, 1165, 1174
NlaIV GGNNCC 3 cut(s) 6, 424, 899
NmeAIII GCCGAG 1 cut(s) 995
NmuCI GTSAC 3 cut(s) 85, 726, 1173
NsbI TGCGCA 1 cut(s) 41
NsiI ATGCAT 2 cut(s) 387, 1172
NspI RCATGY 3 cut(s) 394, 717, 1174
OliI CACNNNNGTG 1 cut(s) 638
PceI AGGCCT 1 cut(s) 257
PciI ACATGT 1 cut(s) 713
PctI GAATGC 1 cut(s) 387
PfeI GAWTC 3 cut(s) 13, 30, 866
PfoI TCCNGGA 1 cut(s) 463
PinAI ACCGGT 1 cut(s) 303
PkrI GCNGC 3 cut(s) 80, 318, 962
PleI GAGTC 3 cut(s) 641, 733, 1083
PpsI GAGTC 3 cut(s) 641, 733, 1083
PscI ACATGT 1 cut(s) 713
PshBI ATTAAT 1 cut(s) 858
Psp6I CCWGG 3 cut(s) 394, 463, 916
PspGI CCWGG 3 cut(s) 394, 463, 916
PspN4I GGNNCC 3 cut(s) 6, 424, 899
PspPI GGNCC 2 cut(s) 806, 911
PstI CTGCAG 3 cut(s) 138, 874, 940
PstNI CAGNNNCTG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 522
RsaNI GTAC 1 cut(s) 521
RseI CAYNNNNRTG 2 cut(s) 492, 638
SaqAI TTAA 4 cut(s) 447, 858, 1053, 1119
SatI GCNGC 3 cut(s) 79, 317, 961
Sau3AI GATC 5 cut(s) 4, 178, 283, 408, 742
Sau96I GGNCC 2 cut(s) 806, 911
SchI GAGTC 3 cut(s) 641, 734, 1084
ScrFI CCNGG 3 cut(s) 396, 465, 918
SduI GDGCHC 2 cut(s) 425, 1188
SexAI ACCWGGT 1 cut(s) 916
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 4 cut(s) 134, 570, 870, 936
SinI GGWCC 2 cut(s) 806, 911
SmiMI CAYNNNNRTG 2 cut(s) 492, 638
SmlI CTYRAG 4 cut(s) 311, 964, 1072, 1118
SmoI CTYRAG 4 cut(s) 311, 964, 1072, 1118
Sse9I AATT 7 cut(s) 115, 245, 288, 412, 593, 955, 1066
SseBI AGGCCT 1 cut(s) 257
SsiI CCGC 4 cut(s) 777, 812, 960, 1006
SspMI CTAG 2 cut(s) 186, 677
StuI AGGCCT 1 cut(s) 257
StyD4I CCNGG 3 cut(s) 394, 463, 916
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 2 cut(s) 479, 520
TaqI TCGA 1 cut(s) 906
TasI AATT 7 cut(s) 115, 245, 288, 412, 593, 955, 1066
TauI GCSGC 1 cut(s) 963
TfiI GAWTC 3 cut(s) 13, 30, 866
Tru1I TTAA 4 cut(s) 447, 858, 1053, 1119
Tru9I TTAA 4 cut(s) 447, 858, 1053, 1119
TscAI CASTG 4 cut(s) 42, 582, 645, 1182
TseFI GTSAC 3 cut(s) 85, 726, 1173
TseI GCWGC 2 cut(s) 78, 316
Tsp45I GTSAC 3 cut(s) 85, 726, 1173
TspDTI ATGAA 7 cut(s) 161, 171, 281, 347, 560, 1090, 1132
TspRI CASTG 4 cut(s) 42, 582, 645, 1182
Vha464I CTTAAG 1 cut(s) 1118
VneI GTGCAC 1 cut(s) 1184
VpaK11BI GGWCC 2 cut(s) 806, 911
VspI ATTAAT 1 cut(s) 858
XagI CCTNNNNNAGG 2 cut(s) 462, 921
XapI RAATTY 3 cut(s) 115, 245, 288
XbaI TCTAGA 1 cut(s) 676
XceI RCATGY 3 cut(s) 394, 717, 1174
XspI CTAG 2 cut(s) 186, 677
Zsp2I ATGCAT 2 cut(s) 387, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.