Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001091

Physical Location & Seq

Genomic Coordinates Forward (+)

26125893 .. 26127440

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAGATATTGCAGGATAAACAGAAATCAACAGAAAAGCAATTTCCGCATAATGACCGACAAAATGGCGTTAGTGAGGTCCCTACGCTGGACTCTGGTTCAGTAACTATTTCCAGCAACAAGAGCACAAAGGTCACACGTGAAGATATTGAAGTTGTCCAGAATTTGATTGAAAGGTGTCTGCGGTTGTATATGAACAAAAATGAAGTCGTCGATACCCTGTTAGATCGTGCTAGGATTGAGCCTGGCTTTACAAGCTTGGTACTGCAGAAATTGGAAGTAGAAAATGCAGAATTTTTCAAGGCTTACTACACGAGGCTAAAGCTGAAAAATCAAATTGTTATGTACAACCGTTTGCTTGAGCAACAATACCAGCTGATGAAACAGCAAGAGCCTCCAGAGGTTCCATTGCCTCCTATGCATAATGGAATGCATTACACGCCTGTTAACAATTTACCTATGGGATACCCCGTCATGCAGCAGCCTCCATTTCCGTCTAAGGGTCATCACCAAATCAATTCCATGGGCACTATAGCGAGTTGTCATTTGGTCAATGGAATCCCTGCTCAAGGAAATTTCCACCATATGCCACTAAACTTATGTCAAGAACAACGCGCTCACAGCTACCTTCATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

213

Amino Acids

24.48

Weight (kDa)

8.38

Isoelectric Point (pI)

59.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_thal_3526	PF09713	53 - 105	1.8e-23	Plant protein 1589 of unknown function (A_thal_3526)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46420 AT2G46420 AT2G46420 AT3G61700 AT3G61700 AT3G61700 AT3G61700
fragaria_vesca	FvH4_7g16290 FvH4_7g16290 FvH4_7g16290 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180
malus_domestica	MD01G1079500.v1.1 MD01G1216500.v1.1 MD07G1148300.v1.1 MD07G1286500.v1.1 MD12G1148300.v1.1
prunus_persica	Prupe.2G186600_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1
pyrus_communis	pycom01g10780 pycom01g22720 pycom07g14730 pycom07g25960
rosa_chinensis	RchiOBHm_Chr1g0359301 RchiOBHm_Chr1g0380221
rosa_laevigata	RLG00000026317 RLG00000027882
rosa_multiflora	Rmu_co8458617.1_g000001 Rmu_sc0001232.1_g000028 Rmu_sc0002689.1_g000001 Rmu_ssc0000135.1_g000052
rosa_roxburghii	Rroxscaffold_4G00279550 Rroxscaffold_4G00297130
rosa_rugosa	Rorug01G0269300 Rorug01G0269400 Rorug01G0419200
rosa_samantha	Rh1AG283300 Rh1AG444000 Rh1BG249500 Rh1BG399100 Rh1CG267400 Rh1CG412500 Rh1DG278400 Rh1DG429600
rosa_wichuraiana	Rw1G025150 Rw1G038560 Rw1G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	615
AciI	CCGC	2 cut(s)	47, 184
AcsI	RAATTY	3 cut(s)	163, 293, 574
AcvI	CACGTG	1 cut(s)	140
AfaI	GTAC	2 cut(s)	264, 347
AfiI	CCNNNNNNNGG	3 cut(s)	88, 500, 569
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	152, 173, 301
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	4 cut(s)	258, 325, 376, 624
AluI	AGCT	4 cut(s)	258, 325, 376, 624
Alw21I	GWGCWC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	478, 481
ApoI	RAATTY	3 cut(s)	163, 293, 574
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AspLEI	GCGC	1 cut(s)	617
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	530
BauI	CACGAG	1 cut(s)	313
BbrPI	CACGTG	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	490, 493
BciT130I	CCWGG	1 cut(s)	246
BciVI	GTATCC	1 cut(s)	458
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	2 cut(s)	266, 531
BfuI	GTATCC	1 cut(s)	458
BisI	GCNGC	2 cut(s)	479, 482
BlsI	GCNGC	2 cut(s)	480, 483
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	81, 405
BmrFI	CCNGG	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	380, 552
BsaAI	YACGTR	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 500, 569
Bse3DI	GCAATG	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	522
BseLI	CCNNNNNNNGG	3 cut(s)	88, 500, 569
BseMI	GCAATG	1 cut(s)	407
BseSI	GKGCMC	1 cut(s)	530
BseXI	GCAGC	2 cut(s)	490, 493
Bsh1236I	CGCG	1 cut(s)	615
BsiHKAI	GWGCWC	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	3 cut(s)	88, 500, 569
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	435
Bsp1286I	GDGCHC	2 cut(s)	128, 530
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	1 cut(s)	226
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	2 cut(s)	47, 184
BspFNI	CGCG	1 cut(s)	615
BspLI	GGNNCC	2 cut(s)	81, 405
BspMAI	CTGCAG	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	407
BsrGI	TGTACA	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	1 cut(s)	226
BssSI	CACGAG	1 cut(s)	313
BssT1I	CCWWGG	1 cut(s)	522
Bst2BI	CACGAG	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	353
BstAUI	TGTACA	1 cut(s)	345
BstBAI	YACGTR	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	498
BstDSI	CCRYGG	1 cut(s)	522
BstENI	CCTNNNNNAGG	1 cut(s)	567
BstFNI	CGCG	1 cut(s)	615
BstHHI	GCGC	1 cut(s)	617
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	6 cut(s)	46, 123, 255, 418, 439, 621
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	2 cut(s)	266, 531
BstSLI	GKGCMC	1 cut(s)	530
BstUI	CGCG	1 cut(s)	615
BstV1I	GCAGC	2 cut(s)	490, 493
BsuI	GTATCC	1 cut(s)	458
BtgI	CCRYGG	1 cut(s)	522
CfoI	GCGC	1 cut(s)	617
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	263, 346
CviAII	CATG	2 cut(s)	475, 523
CviQI	GTAC	2 cut(s)	263, 346
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	79
Eco72I	CACGTG	1 cut(s)	140
EcoNI	CCTNNNNNAGG	1 cut(s)	567
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	522
EcoT22I	ATGCAT	2 cut(s)	423, 435
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	2 cut(s)	478, 526
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	474, 522
FauNDI	CATATG	1 cut(s)	585
Fnu4HI	GCNGC	2 cut(s)	479, 482
Fsp4HI	GCNGC	2 cut(s)	479, 482
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	1 cut(s)	616
GluI	GCNGC	2 cut(s)	479, 482
GsuI	CTGGAG	1 cut(s)	381
HhaI	GCGC	1 cut(s)	617
Hin1II	CATG	2 cut(s)	478, 526
Hin6I	GCGC	1 cut(s)	615
HinP1I	GCGC	1 cut(s)	615
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	2 cut(s)	92, 558
HpaI	GTTAAC	1 cut(s)	448
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	1 cut(s)	638
Hpy188III	TCNNGA	3 cut(s)	160, 398, 605
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	638
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	6 cut(s)	13, 268, 290, 421, 433, 478
HpyF10VI	GCNNNNNNNGC	6 cut(s)	46, 123, 255, 418, 439, 621
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	2 cut(s)	478, 526
HspAI	GCGC	1 cut(s)	615
KspAI	GTTAAC	1 cut(s)	448
Kzo9I	GATC	1 cut(s)	226
Lsp1109I	GCAGC	2 cut(s)	490, 493
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	2 cut(s)	103, 133
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	16, 155
MhlI	GDGCHC	2 cut(s)	128, 530
MluCI	AATT	8 cut(s)	41, 163, 272, 293, 336, 451, 517, 574
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	6 cut(s)	70, 309, 394, 405, 423, 495
Mph1103I	ATGCAT	2 cut(s)	423, 435
MseI	TTAA	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	376
MspR9I	CCNGG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	246
MvnI	CGCG	1 cut(s)	615
MwoI	GCNNNNNNNGC	6 cut(s)	46, 123, 255, 418, 439, 621
NcoI	CCATGG	1 cut(s)	522
NdeI	CATATG	1 cut(s)	585
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	2 cut(s)	478, 526
NlaIV	GGNNCC	2 cut(s)	81, 405
NmuCI	GTSAC	1 cut(s)	133
NsiI	ATGCAT	2 cut(s)	423, 435
PctI	GAATGC	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	558
PkrI	GCNGC	2 cut(s)	480, 483
PleI	GAGTC	1 cut(s)	86
PmaCI	CACGTG	1 cut(s)	140
PmlI	CACGTG	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	86
Ppu21I	YACGTR	1 cut(s)	140
PpuMI	RGGWCCY	1 cut(s)	79
Psp5II	RGGWCCY	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	244
PspCI	CACGTG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	81, 405
PspPI	GGNCC	1 cut(s)	79
PspPPI	RGGWCCY	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	270
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	2 cut(s)	264, 347
RsaNI	GTAC	2 cut(s)	263, 346
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	2 cut(s)	479, 482
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	2 cut(s)	128, 530
SfcI	CTRYAG	2 cut(s)	266, 531
SinI	GGWCC	1 cut(s)	79
SmlI	CTYRAG	2 cut(s)	359, 567
SmoI	CTYRAG	2 cut(s)	359, 567
Sse9I	AATT	8 cut(s)	41, 163, 272, 293, 336, 451, 517, 574
SsiI	CCGC	2 cut(s)	47, 184
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	1 cut(s)	213
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	8 cut(s)	41, 163, 272, 293, 336, 451, 517, 574
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	1 cut(s)	558
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	478, 481
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	5 cut(s)	17, 209, 219, 395, 620
TspGWI	ACGGA	1 cut(s)	483
VpaK11BI	GGWCC	1 cut(s)	79
XagI	CCTNNNNNAGG	1 cut(s)	567
XapI	RAATTY	3 cut(s)	163, 293, 574
XspI	CTAG	1 cut(s)	234
Zsp2I	ATGCAT	2 cut(s)	423, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.