Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001091

Physical Location & Seq

Genomic Coordinates Forward (+)

29262321 .. 29267021

Gene Structure 4701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G308500.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAAGATGGTTCAGGATCCACAGAAGTCAACAGAAAAGCAGTTCTCAAAGAAAATATCAAATGACCCCCAGAGTGACCAACAGAATAGCATCACCGAGGTTCCAAGCAACAAGAGCAGAAAAATCACACGTGAAGATATTGAAGTTGTCCAGAATTTGATTGAGAGGTGTTTGCAGTTGTATATGAACAGAAATGAAGTCATCAATACCCTCTTAGATCGTGCTAGGATTGAGCCTGGCTTCACGAGCTTGGTACTGCAGAAATTGGAAGAAGAAAATGCAGAATTTTTCAAGGCCTACTACATAAGGCTAAAGCTGAAAAATCAAATTGTTCTGTATAACCATTTGCTAGAGCAACAATACCATCTGATGAAAGACCAAGTCCCTCCAGAGGTTCCATTGCCTCGTATGCAAAATGGAATGCATTACATGCCTGTTCACAGTTCATCTATGGGGTACCCCATCATGCAGCAGCCTCCAATTCCATCTAACCGTCATCACCAAATTAGTAACATGGGCACTACATCTAGTTGTCATGTGGTAAATGGAATCCCTGCTCAAGGACATTTCCACCATATGCCACTAAACTGTGGTAACGAAAGCCTAGCTGATGCACCATCTATCATCCCTGCCAGTGGTATCAAGACAGAGATGCTTTCAAGTCCTGTATCAGTGGCATCCAATGGACAATTTCCTTTCACTCCATCAGAAATATCAGGGCTAGGTGTGGACACATCAGTGCTTGACTCTGCATTTACTTCTCATTTAGCAAATTTAGAAAGGTTGGGTATTGGACCAGATGGTGGGACCAGATGGCCTAAGGAGACCCTTCGATCATCGGGGCAGTCTACTTGGAATTTTGGCCTCTTTGATTCTACTGCTGAATGGCCAAACTTGCAAGATCTTGGAGCACTGGGTAACTATTCGGGTTCACCCTTTCTGCCTCCTGAGTCGGATGTTGTTCTTGATTCACCAGAGCAAAATGACATGGTTGAGGAGTTCTTTGCCGACGCTGGCTCAGGTCAAGGCTCTCAATCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

348

Amino Acids

38.58

Weight (kDa)

5.23

Isoelectric Point (pI)

63.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46420 AT2G46420 AT2G46420 AT3G61700 AT3G61700 AT3G61700 AT3G61700
fragaria_vesca	FvH4_7g16290 FvH4_7g16290 FvH4_7g16290 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180
malus_domestica	MD01G1079500.v1.1 MD01G1216500.v1.1 MD07G1148300.v1.1 MD07G1286500.v1.1 MD12G1148300.v1.1
prunus_persica	Prupe.2G186600_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1
pyrus_communis	pycom01g10780 pycom01g22720 pycom07g14730 pycom07g25960
rosa_chinensis	RchiOBHm_Chr1g0359301 RchiOBHm_Chr1g0380221
rosa_laevigata	RLG00000026317 RLG00000027882
rosa_multiflora	Rmu_co8458617.1_g000001 Rmu_sc0001232.1_g000028 Rmu_sc0002689.1_g000001 Rmu_ssc0000135.1_g000052
rosa_roxburghii	Rroxscaffold_4G00279550 Rroxscaffold_4G00297130
rosa_rugosa	Rorug01G0269300 Rorug01G0269400 Rorug01G0419200
rosa_samantha	Rh1AG283300 Rh1AG444000 Rh1BG249500 Rh1BG399100 Rh1CG267400 Rh1CG412500 Rh1DG278400 Rh1DG429600
rosa_wichuraiana	Rw1G025150 Rw1G038560 Rw1G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	456
AccB1I	GGYRCC	1 cut(s)	456
AccB7I	CCANNNNNTGG	1 cut(s)	803
AccI	GTMKAC	1 cut(s)	848
AclWI	GGATC	2 cut(s)	11, 24
AcoI	YGGCCR	1 cut(s)	887
AcsI	RAATTY	4 cut(s)	154, 284, 772, 856
AcvI	CACGTG	1 cut(s)	131
AfaI	GTAC	2 cut(s)	255, 458
AfiI	CCNNNNNNNGG	4 cut(s)	391, 560, 635, 803
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	143, 292, 660
AjnI	CCWGG	1 cut(s)	235
AleI	CACNNNNGTG	1 cut(s)	737
AluBI	AGCT	3 cut(s)	249, 316, 608
AluI	AGCT	3 cut(s)	249, 316, 608
Alw21I	GWGCWC	1 cut(s)	913
Alw26I	GTCTC	1 cut(s)	818
AlwI	GGATC	2 cut(s)	11, 24
AoxI	GGCC	4 cut(s)	294, 815, 862, 887
ApeKI	GCWGC	2 cut(s)	469, 472
ApoI	RAATTY	4 cut(s)	154, 284, 772, 856
Asp718I	GGTACC	1 cut(s)	456
AspS9I	GGNCC	2 cut(s)	794, 807
AsuHPI	GGTGA	4 cut(s)	85, 491, 924, 963
AvaII	GGWCC	2 cut(s)	794, 807
AxyI	CCTNAGG	1 cut(s)	819
BaeGI	GKGCMC	1 cut(s)	521
BalI	TGGCCA	1 cut(s)	889
BamHI	GGATCC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	456
BauI	CACGAG	1 cut(s)	244
BbrPI	CACGTG	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	913
BbvI	GCAGC	2 cut(s)	481, 484
BccI	CCATC	7 cut(s)	372, 470, 493, 625, 712, 794, 807
BciT130I	CCWGG	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	818
BfaI	CTAG	5 cut(s)	225, 350, 528, 605, 722
BfmI	CTRYAG	1 cut(s)	257
BglII	AGATCT	1 cut(s)	901
BisI	GCNGC	2 cut(s)	470, 473
BlsI	GCNGC	2 cut(s)	471, 474
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	2 cut(s)	794, 807
BmgT120I	GGNCC	2 cut(s)	794, 807
BmiI	GGNNCC	5 cut(s)	18, 102, 396, 458, 808
BmrFI	CCNGG	1 cut(s)	237
BmrI	ACTGGG	1 cut(s)	923
BmsI	GCATC	4 cut(s)	99, 601, 642, 686
BmuI	ACTGGG	1 cut(s)	923
BpmI	CTGGAG	1 cut(s)	372
Bpu10I	CCTNAGC	1 cut(s)	1018
BpuEI	CTTGAG	1 cut(s)	543
BsaAI	YACGTR	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	818
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	4 cut(s)	391, 560, 635, 803
Bse1I	ACTGG	2 cut(s)	633, 918
Bse21I	CCTNAGG	1 cut(s)	819
Bse3DI	GCAATG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	3 cut(s)	624, 677, 961
BseLI	CCNNNNNNNGG	4 cut(s)	391, 560, 635, 803
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	2 cut(s)	939, 1032
BseNI	ACTGG	2 cut(s)	633, 918
BseRI	GAGGAG	1 cut(s)	1010
BseSI	GKGCMC	1 cut(s)	521
BseXI	GCAGC	2 cut(s)	481, 484
BshFI	GGCC	4 cut(s)	296, 817, 864, 889
BshNI	GGYRCC	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	913
BslFI	GGGAC	2 cut(s)	368, 820
BslI	CCNNNNNNNGG	4 cut(s)	391, 560, 635, 803
BsmAI	GTCTC	1 cut(s)	818
BsmFI	GGGAC	2 cut(s)	368, 820
BsmI	GAATGC	1 cut(s)	426
BsnI	GGCC	4 cut(s)	296, 817, 864, 889
Bso31I	GGTCTC	1 cut(s)	818
Bsp1286I	GDGCHC	2 cut(s)	521, 913
Bsp143I	GATC	4 cut(s)	16, 217, 833, 901
BspANI	GGCC	4 cut(s)	296, 817, 864, 889
BspCNI	CTCAG	2 cut(s)	940, 1031
BspLI	GGNNCC	5 cut(s)	18, 102, 396, 458, 808
BspMAI	CTGCAG	1 cut(s)	261
BspPI	GGATC	2 cut(s)	11, 24
BspT107I	GGYRCC	1 cut(s)	456
BspTNI	GGTCTC	1 cut(s)	818
BsrDI	GCAATG	1 cut(s)	398
BsrI	ACTGG	2 cut(s)	633, 918
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	4 cut(s)	16, 217, 833, 901
BssSI	CACGAG	1 cut(s)	244
Bst2BI	CACGAG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	3 cut(s)	443, 494, 590
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstBAI	YACGTR	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	1015
BstDEI	CTNAG	4 cut(s)	214, 819, 948, 1018
BstENI	CCTNNNNNAGG	1 cut(s)	558
BstF5I	GGATG	3 cut(s)	624, 677, 961
BstKTI	GATC	4 cut(s)	19, 220, 836, 904
BstMAI	GTCTC	1 cut(s)	818
BstMBI	GATC	4 cut(s)	16, 217, 833, 901
BstMWI	GCNNNNNNNGC	5 cut(s)	114, 246, 409, 430, 895
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	257
BstSLI	GKGCMC	1 cut(s)	521
BstV1I	GCAGC	2 cut(s)	481, 484
BstX2I	RGATCY	2 cut(s)	16, 901
BstYI	RGATCY	2 cut(s)	16, 901
Bsu36I	CCTNAGG	1 cut(s)	819
BsuRI	GGCC	4 cut(s)	296, 817, 864, 889
BtsCI	GGATG	3 cut(s)	624, 677, 961
BtsIMutI	CAGTG	4 cut(s)	640, 678, 744, 911
Cac8I	GCNNGC	1 cut(s)	1015
Cfr13I	GGNCC	2 cut(s)	794, 807
CseI	GACGC	1 cut(s)	1019
Csp6I	GTAC	2 cut(s)	254, 457
CviAII	CATG	5 cut(s)	430, 466, 514, 536, 988
CviQI	GTAC	2 cut(s)	254, 457
DdeI	CTNAG	4 cut(s)	214, 819, 948, 1018
DpnI	GATC	4 cut(s)	18, 219, 835, 903
DpnII	GATC	4 cut(s)	16, 217, 833, 901
EaeI	YGGCCR	1 cut(s)	887
Eco147I	AGGCCT	1 cut(s)	296
Eco31I	GGTCTC	1 cut(s)	818
Eco47I	GGWCC	2 cut(s)	794, 807
Eco72I	CACGTG	1 cut(s)	131
Eco81I	CCTNAGG	1 cut(s)	819
EcoNI	CCTNNNNNAGG	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	426
FaeI	CATG	5 cut(s)	433, 469, 517, 539, 991
FaqI	GGGAC	2 cut(s)	368, 820
FatI	CATG	5 cut(s)	429, 465, 513, 535, 987
FauNDI	CATATG	1 cut(s)	576
FblI	GTMKAC	1 cut(s)	848
Fnu4HI	GCNGC	2 cut(s)	470, 473
FokI	GGATG	3 cut(s)	611, 664, 968
Fsp4HI	GCNGC	2 cut(s)	470, 473
FspBI	CTAG	5 cut(s)	225, 350, 528, 605, 722
GluI	GCNGC	2 cut(s)	470, 473
GsuI	CTGGAG	1 cut(s)	372
HaeIII	GGCC	4 cut(s)	296, 817, 864, 889
HgaI	GACGC	1 cut(s)	1019
Hin1II	CATG	5 cut(s)	433, 469, 517, 539, 991
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	5 cut(s)	549, 746, 872, 950, 968
HphI	GGTGA	4 cut(s)	85, 491, 924, 963
Hpy166II	GTNNAC	5 cut(s)	30, 439, 730, 849, 932
Hpy188I	TCNGA	4 cut(s)	369, 709, 955, 1039
Hpy188III	TCNNGA	7 cut(s)	14, 151, 244, 389, 643, 947, 965
Hpy8I	GTNNAC	5 cut(s)	30, 439, 730, 849, 932
Hpy99I	CGWCG	1 cut(s)	1013
HpyAV	CCTTC	1 cut(s)	839
HpyCH4III	ACNGT	3 cut(s)	443, 494, 590
HpyCH4IV	ACGT	1 cut(s)	130
HpyCH4V	TGCA	9 cut(s)	175, 259, 281, 412, 424, 469, 614, 752, 898
HpyF10VI	GCNNNNNNNGC	5 cut(s)	114, 246, 409, 430, 895
HpyF3I	CTNAG	4 cut(s)	214, 819, 948, 1018
HpySE526I	ACGT	1 cut(s)	130
Hsp92II	CATG	5 cut(s)	433, 469, 517, 539, 991
KpnI	GGTACC	1 cut(s)	460
Kzo9I	GATC	4 cut(s)	16, 217, 833, 901
LmnI	GCTCC	1 cut(s)	908
Lsp1109I	GCAGC	2 cut(s)	481, 484
LweI	GCATC	4 cut(s)	99, 601, 642, 686
MaeI	CTAG	5 cut(s)	225, 350, 528, 605, 722
MaeII	ACGT	1 cut(s)	130
MaeIII	GTNAC	4 cut(s)	74, 509, 593, 917
MalI	GATC	4 cut(s)	18, 219, 835, 903
MboI	GATC	4 cut(s)	16, 217, 833, 901
MboII	GAAGA	4 cut(s)	16, 146, 281, 284
MflI	RGATCY	2 cut(s)	16, 901
MhlI	GDGCHC	2 cut(s)	521, 913
MlsI	TGGCCA	1 cut(s)	889
MluCI	AATT	9 cut(s)	154, 263, 284, 327, 480, 504, 689, 772, 856
MluNI	TGGCCA	1 cut(s)	889
MlyI	GAGTC	2 cut(s)	740, 959
MmeI	TCCRAC	1 cut(s)	933
Mox20I	TGGCCA	1 cut(s)	889
Mph1103I	ATGCAT	1 cut(s)	426
MscI	TGGCCA	1 cut(s)	889
MslI	CAYNNNNRTG	1 cut(s)	737
Msp20I	TGGCCA	1 cut(s)	889
MspR9I	CCNGG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	5 cut(s)	114, 246, 409, 430, 895
NdeI	CATATG	1 cut(s)	576
NdeII	GATC	4 cut(s)	16, 217, 833, 901
NlaIII	CATG	5 cut(s)	433, 469, 517, 539, 991
NlaIV	GGNNCC	5 cut(s)	18, 102, 396, 458, 808
NmuCI	GTSAC	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	426
NspI	RCATGY	1 cut(s)	433
OliI	CACNNNNGTG	1 cut(s)	737
PceI	AGGCCT	1 cut(s)	296
PctI	GAATGC	1 cut(s)	426
PfeI	GAWTC	3 cut(s)	549, 872, 968
PflFI	GACNNNGTC	1 cut(s)	380
PflMI	CCANNNNNTGG	1 cut(s)	803
PkrI	GCNGC	2 cut(s)	471, 474
PleI	GAGTC	2 cut(s)	740, 958
PmaCI	CACGTG	1 cut(s)	131
PmlI	CACGTG	1 cut(s)	131
PpsI	GAGTC	2 cut(s)	740, 958
Ppu21I	YACGTR	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	235
PspCI	CACGTG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	5 cut(s)	18, 102, 396, 458, 808
PspPI	GGNCC	2 cut(s)	794, 807
PstI	CTGCAG	1 cut(s)	261
PsuI	RGATCY	2 cut(s)	16, 901
PsyI	GACNNNGTC	1 cut(s)	380
RsaI	GTAC	2 cut(s)	255, 458
RsaNI	GTAC	2 cut(s)	254, 457
RseI	CAYNNNNRTG	1 cut(s)	737
SatI	GCNGC	2 cut(s)	470, 473
Sau3AI	GATC	4 cut(s)	16, 217, 833, 901
Sau96I	GGNCC	2 cut(s)	794, 807
SchI	GAGTC	2 cut(s)	740, 959
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	2 cut(s)	521, 913
SfaNI	GCATC	4 cut(s)	99, 601, 642, 686
SfcI	CTRYAG	1 cut(s)	257
SinI	GGWCC	2 cut(s)	794, 807
SmiMI	CAYNNNNRTG	1 cut(s)	737
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
Sse9I	AATT	9 cut(s)	154, 263, 284, 327, 480, 504, 689, 772, 856
SseBI	AGGCCT	1 cut(s)	296
SspMI	CTAG	5 cut(s)	225, 350, 528, 605, 722
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	3 cut(s)	443, 494, 590
TaiI	ACGT	1 cut(s)	133
TaqI	TCGA	1 cut(s)	832
TasI	AATT	9 cut(s)	154, 263, 284, 327, 480, 504, 689, 772, 856
TfiI	GAWTC	3 cut(s)	549, 872, 968
TscAI	CASTG	4 cut(s)	640, 678, 744, 918
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	2 cut(s)	469, 472
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	5 cut(s)	17, 200, 210, 386, 435
TspRI	CASTG	4 cut(s)	640, 678, 744, 918
Tth111I	GACNNNGTC	1 cut(s)	380
Van91I	CCANNNNNTGG	1 cut(s)	803
VpaK11BI	GGWCC	2 cut(s)	794, 807
XagI	CCTNNNNNAGG	1 cut(s)	558
XapI	RAATTY	4 cut(s)	154, 284, 772, 856
XceI	RCATGY	1 cut(s)	433
XmiI	GTMKAC	1 cut(s)	848
XspI	CTAG	5 cut(s)	225, 350, 528, 605, 722
Zsp2I	ATGCAT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.