Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001091

Physical Location & Seq

Genomic Coordinates Forward (+)

22834611 .. 22835960

Gene Structure 1350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1148300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAGAAGCAATTTCCCCATAATGACCAACAAAATGGCGTCAGTGAGGTTCCTACGGTGGACTCTGGTTCAGTATCTATTTCCAGCAACAAGGGTACAAAAGTCACGCGTGAAGATATTGAAGTTGTCCAGAATTTGGTTGAAAGATGTCTGCGGTTGTATATGAACAAAAATGAAGTCGTCAATACCCTGTTAGATCGTGCTAGGATTGAGCCGGGCTTTACAAGCTTGGTACTTGAGAAATTGGAAGTAGAAAATGCAGAATTTTTCAAGGCTTACTACACGAGGCTAAAGCTGAAAAATCAAATTGTTATGTACAACCGTTTGCTTGAGCAACAATACCATCTGATGAAACAGCAAGAGCCTCCAGAGGTTCCATTGCCTCCCTTGCATAATGGGATGCATTACATGCCAGTTAACAATTTACCTATGGGATACCCCGTCATGCAGCAACCTCCATTTCCGTCTAAGGGTCATCACCAAATCAATTCCATAGGCACTATATCGAGTTGTCATTTGGTCAATGGAATCCCTGCTCATGGAAATTTCCACCATATGCCCCTGAACTTATGTCAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

194

Amino Acids

22.1

Weight (kDa)

6.55

Isoelectric Point (pI)

59.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_thal_3526	PF09713	43 - 95	8.2e-23	Plant protein 1589 of unknown function (A_thal_3526)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46420 AT2G46420 AT2G46420 AT3G61700 AT3G61700 AT3G61700 AT3G61700
fragaria_vesca	FvH4_7g16290 FvH4_7g16290 FvH4_7g16290 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180
malus_domestica	MD01G1079500.v1.1 MD01G1216500.v1.1 MD07G1148300.v1.1 MD07G1286500.v1.1 MD12G1148300.v1.1
prunus_persica	Prupe.2G186600_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1
pyrus_communis	pycom01g10780 pycom01g22720 pycom07g14730 pycom07g25960
rosa_chinensis	RchiOBHm_Chr1g0359301 RchiOBHm_Chr1g0380221
rosa_laevigata	RLG00000026317 RLG00000027882
rosa_multiflora	Rmu_co8458617.1_g000001 Rmu_sc0001232.1_g000028 Rmu_sc0002689.1_g000001 Rmu_ssc0000135.1_g000052
rosa_roxburghii	Rroxscaffold_4G00279550 Rroxscaffold_4G00297130
rosa_rugosa	Rorug01G0269300 Rorug01G0269400 Rorug01G0419200
rosa_samantha	Rh1AG283300 Rh1AG444000 Rh1BG249500 Rh1BG399100 Rh1CG267400 Rh1CG412500 Rh1DG278400 Rh1DG429600
rosa_wichuraiana	Rw1G025150 Rw1G038560 Rw1G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccII	CGCG	1 cut(s)	109
AciI	CCGC	1 cut(s)	154
AcsI	RAATTY	3 cut(s)	133, 263, 544
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	3 cut(s)	97, 234, 317
AfiI	CCNNNNNNNGG	3 cut(s)	136, 470, 539
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	3 cut(s)	122, 143, 271
AluBI	AGCT	2 cut(s)	228, 295
AluI	AGCT	2 cut(s)	228, 295
ApeKI	GCWGC	1 cut(s)	448
ApoI	RAATTY	3 cut(s)	133, 263, 544
ArsI	GACNNNNNNTTYG	2 cut(s)	162, 194
AsuC2I	CCSGG	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	470
BaeI	ACNNNNGTAYC	2 cut(s)	87, 120
BauI	CACGAG	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	460
BccI	CCATC	1 cut(s)	351
BciVI	GTATCC	1 cut(s)	428
BcnI	CCSGG	1 cut(s)	216
BfaI	CTAG	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	1 cut(s)	449
BlsI	GCNGC	1 cut(s)	450
Bme1390I	CCNGG	1 cut(s)	216
BmiI	GGNNCC	2 cut(s)	51, 375
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	351
BpuEI	CTTGAG	2 cut(s)	257, 350
BpuMI	CCSGG	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 470, 539
Bse1I	ACTGG	1 cut(s)	413
Bse3DI	GCAATG	1 cut(s)	377
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	3 cut(s)	136, 470, 539
BseMI	GCAATG	1 cut(s)	377
BseNI	ACTGG	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	460
Bsh1236I	CGCG	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	215
BslI	CCNNNNNNNGG	3 cut(s)	136, 470, 539
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	51, 375
BsrDI	GCAATG	1 cut(s)	377
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	413
BssMI	GATC	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	283
Bst2BI	CACGAG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	58, 323
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	409
BstAUI	TGTACA	1 cut(s)	315
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	405
BstFNI	CGCG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 388, 409
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	1 cut(s)	214
BstUI	CGCG	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	460
BstXI	CCANNNNNNTGG	1 cut(s)	35
BsuI	GTATCC	1 cut(s)	428
BtsCI	GGATG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	49
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	3 cut(s)	96, 233, 316
CviAII	CATG	3 cut(s)	409, 445, 539
CviJI	RGCY	7 cut(s)	214, 219, 228, 275, 289, 295, 364
CviKI_1	RGCY	7 cut(s)	214, 219, 228, 275, 289, 295, 364
CviQI	GTAC	3 cut(s)	96, 233, 316
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
EcoT22I	ATGCAT	1 cut(s)	405
FaeI	CATG	3 cut(s)	412, 448, 542
FatI	CATG	3 cut(s)	408, 444, 538
FauNDI	CATATG	1 cut(s)	555
Fnu4HI	GCNGC	1 cut(s)	449
FokI	GGATG	1 cut(s)	412
Fsp4HI	GCNGC	1 cut(s)	449
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	1 cut(s)	449
GsuI	CTGGAG	1 cut(s)	351
HapII	CCGG	1 cut(s)	215
HgaI	GACGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	412, 448, 542
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	2 cut(s)	62, 528
HpaI	GTTAAC	1 cut(s)	418
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	2 cut(s)	61, 418
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	3 cut(s)	130, 368, 575
Hpy8I	GTNNAC	2 cut(s)	61, 418
HpyCH4III	ACNGT	2 cut(s)	58, 323
HpyCH4V	TGCA	4 cut(s)	260, 391, 403, 448
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 388, 409
HpyF3I	CTNAG	1 cut(s)	468
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	412, 448, 542
KspAI	GTTAAC	1 cut(s)	418
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	9 cut(s)	51, 97, 143, 203, 228, 381, 426, 546, 575
Lsp1109I	GCAGC	1 cut(s)	460
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	1 cut(s)	125
MluCI	AATT	8 cut(s)	11, 133, 242, 263, 306, 421, 487, 544
MluI	ACGCGT	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	6 cut(s)	40, 279, 364, 375, 393, 465
Mph1103I	ATGCAT	1 cut(s)	405
MseI	TTAA	1 cut(s)	417
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	109
MwoI	GCNNNNNNNGC	3 cut(s)	225, 388, 409
NciI	CCSGG	1 cut(s)	216
NdeI	CATATG	1 cut(s)	555
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	3 cut(s)	412, 448, 542
NlaIV	GGNNCC	2 cut(s)	51, 375
NmuCI	GTSAC	1 cut(s)	103
NsiI	ATGCAT	1 cut(s)	405
NspI	RCATGY	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	528
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	450
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	51, 375
RsaI	GTAC	3 cut(s)	97, 234, 317
RsaNI	GTAC	3 cut(s)	96, 233, 316
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	1 cut(s)	449
Sau3AI	GATC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	6 cut(s)	51, 230, 297, 375, 430, 457
SfaNI	GCATC	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	236, 329
SmoI	CTYRAG	2 cut(s)	236, 329
Sse9I	AATT	8 cut(s)	11, 133, 242, 263, 306, 421, 487, 544
SsiI	CCGC	1 cut(s)	154
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	58, 323
TaqI	TCGA	1 cut(s)	506
TasI	AATT	8 cut(s)	11, 133, 242, 263, 306, 421, 487, 544
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	1 cut(s)	528
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	3 cut(s)	179, 189, 365
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	1 cut(s)	49
Van91I	CCANNNNNTGG	1 cut(s)	136
XapI	RAATTY	3 cut(s)	133, 263, 544
XceI	RCATGY	1 cut(s)	412
XspI	CTAG	1 cut(s)	204
Zsp2I	ATGCAT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.