RchiOBHm_Chr1g0359301

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001091
Physical Location & Seq
Forward (+)
51320906 .. 51326015
5110 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58436

Sequence Viewer

Length: 1083 bp
ATGAAGACGTTACAGAGTGGGCAAGAAATACAATCTTCAAACCAAGCTATACATGATACACAAGGTGACCAAGTGAAAAACCAAACAAATGAGGCTCCTGGAACTGATTCAGCTTCAATATCATCTTCAGGCAATGACAACAAGAAAGTATCACGCCAAGATATTGAACTTGTCCAGAATCTAATAGAGCGGTGTTTACAATTATATATGAATAGAGAAGAGGTGGTTAAGACTCTCTTGACTCGCGCAAGAATAGATCCTGGATTTACCACTTTGGTATGGCAGAAGTTGGAAGAAGAAAATGCCGACTTTTTCAGGGCCTATTACATAAGGCTAAAATTGAAGAAACAAATCATCCTGTTTAATCATCTACTGGAGCATCACTGTCATCTGTCGAAGTATCATCCCATGCATCCAAAGGTTCCGTTGGCACCTATACAGAATGGGATTCATCCCATGCCTGTTAACAACTTACCTATGGGATACCCTGTCCTTCAGCAACCTCCAATGCCAGCAGCAGGTCAACCCCATCTTGATTCCATGGGAATATCTAACTGTCATGTAGTTAATGGAGTTCCCGCACCGAGCAATTTCCATCCAATTCGGATGAATTCTGGGAATGATATGGTGATGGATTGCAGTAGTTCTGATGTGGTTCCTGTAATTCCACCAAACAGCAACATGTCATCCATGTCCGAAATTCCTGTCAGTCCTACATCAGTTGCATCCAGTGGTCATTTCCCTTTCACTGCATCAGAAATATCAGGAATGGGAGTAGACACATCAGCACTTGATACAACATTTACATCTGATGTGGCAAGTAATGGGTTGCAGCTTGGACCCGATGGTGGGGGTGGCAGATCACTGGATCAGATCCAGTGGAATTTCAGCCTATCAGATCTTACAGCAGATTTGTCCAACTTAGGAGATTTAGGAGCCTTGGGAAACTATCCTGGCTCCCCCTTTCTGCCTTCTGATTCTGAAATTCTACTAGACTCTCCCGAGCAAGAGGATATAGAGGAATTCTTTGTCGATTCTGTCCCCGAGCCACCTTGCTCTCAATCAGACGACGAGAAACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

360

Amino Acids

39.24

Weight (kDa)

4.69

Isoelectric Point (pI)

63.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 58 - 109 1.9e-25 Plant protein 1589 of unknown function (A_thal_3526)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 430
AccBSI CCGCTC 1 cut(s) 190
AccI GTMKAC 1 cut(s) 777
AccII CGCG 1 cut(s) 246
AciI CCGC 2 cut(s) 190, 579
AclWI GGATC 3 cut(s) 251, 868, 876
AcsI RAATTY 5 cut(s) 610, 699, 883, 984, 1022
AcuI CTGAAG 2 cut(s) 111, 479
AdeI CACNNNGTG 1 cut(s) 65
AfiI CCNNNNNNNGG 3 cut(s) 518, 848, 849
AflIII ACRYGT 1 cut(s) 681
AgsI TTSAA 4 cut(s) 39, 117, 167, 343
AjnI CCWGG 3 cut(s) 97, 259, 952
AluBI AGCT 3 cut(s) 47, 113, 835
AluI AGCT 3 cut(s) 47, 113, 835
AlwI GGATC 3 cut(s) 251, 868, 876
Ama87I CYCGRG 2 cut(s) 1001, 1043
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 2 cut(s) 515, 832
ApoI RAATTY 5 cut(s) 610, 699, 883, 984, 1022
ArsI GACNNNNNNTTYG 2 cut(s) 690, 722
Asp700I GAANNNNTTC 1 cut(s) 106
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 2 cut(s) 318, 839
AsuHPI GGTGA 2 cut(s) 77, 640
AvaI CYCGRG 2 cut(s) 1001, 1043
AvaII GGWCC 1 cut(s) 839
BanI GGYRCC 1 cut(s) 430
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 527, 844
BccI CCATC 4 cut(s) 537, 603, 625, 839
BciT130I CCWGG 3 cut(s) 99, 261, 954
BciVI GTATCC 1 cut(s) 476
BfaI CTAG 1 cut(s) 992
BfuAI ACCTGC 1 cut(s) 509
BfuI GTATCC 1 cut(s) 476
BglII AGATCT 1 cut(s) 898
BisI GCNGC 2 cut(s) 516, 833
BlsI GCNGC 2 cut(s) 517, 834
Bme1390I CCNGG 3 cut(s) 99, 261, 954
Bme18I GGWCC 1 cut(s) 839
BmeT110I CYCGRG 2 cut(s) 1001, 1043
BmgT120I GGNCC 2 cut(s) 318, 839
BmiI GGNNCC 7 cut(s) 96, 423, 432, 657, 841, 937, 958
BmrFI CCNGG 3 cut(s) 99, 261, 954
BmsI GCATC 4 cut(s) 388, 421, 734, 761
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 540, 939
Bsc4I CCNNNNNNNGG 3 cut(s) 518, 848, 849
Bse1I ACTGG 4 cut(s) 378, 729, 870, 877
Bse3DI GCAATG 1 cut(s) 139
BseBI CCWGG 3 cut(s) 99, 261, 954
BseDI CCNNGG 2 cut(s) 540, 939
BseGI GGATG 8 cut(s) 354, 403, 412, 451, 595, 612, 686, 725
BseLI CCNNNNNNNGG 3 cut(s) 518, 848, 849
BseMI GCAATG 1 cut(s) 139
BseNI ACTGG 4 cut(s) 378, 729, 870, 877
BseXI GCAGC 2 cut(s) 527, 844
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 1 cut(s) 320
BshNI GGYRCC 1 cut(s) 430
BsiHKCI CYCGRG 2 cut(s) 1001, 1043
BslFI GGGAC 1 cut(s) 1025
BslI CCNNNNNNNGG 3 cut(s) 518, 848, 849
BsmFI GGGAC 1 cut(s) 1025
BsnI GGCC 1 cut(s) 320
BsoBI CYCGRG 2 cut(s) 1001, 1043
Bsp143I GATC 5 cut(s) 256, 860, 868, 873, 898
Bsp19I CCATGG 1 cut(s) 540
BspACI CCGC 2 cut(s) 190, 579
BspANI GGCC 1 cut(s) 320
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 7 cut(s) 96, 423, 432, 657, 841, 937, 958
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 3 cut(s) 251, 868, 876
BspT107I GGYRCC 1 cut(s) 430
BsrBI CCGCTC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 139
BsrI ACTGG 4 cut(s) 378, 729, 870, 877
BssECI CCNNGG 2 cut(s) 540, 939
BssMI GATC 5 cut(s) 256, 860, 868, 873, 898
BssT1I CCWWGG 2 cut(s) 540, 939
Bst2UI CCWGG 3 cut(s) 99, 261, 954
Bst4CI ACNGT 3 cut(s) 386, 557, 1080
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 1 cut(s) 922
BstDSI CCRYGG 1 cut(s) 540
BstEII GGTNACC 1 cut(s) 65
BstF5I GGATG 8 cut(s) 354, 403, 412, 451, 595, 612, 686, 725
BstFNI CGCG 1 cut(s) 246
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 5 cut(s) 259, 863, 871, 876, 901
BstMBI GATC 5 cut(s) 256, 860, 868, 873, 898
BstNI CCWGG 3 cut(s) 99, 261, 954
BstNSI RCATGY 1 cut(s) 685
BstPI GGTNACC 1 cut(s) 65
BstSCI CCNGG 3 cut(s) 97, 259, 952
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 527, 844
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 3 cut(s) 256, 873, 898
BstYI RGATCY 3 cut(s) 256, 873, 898
BsuI GTATCC 1 cut(s) 476
BsuRI GGCC 1 cut(s) 320
BtgI CCRYGG 1 cut(s) 540
BtsCI GGATG 8 cut(s) 354, 403, 412, 451, 595, 612, 686, 725
BtsI GCAGTG 1 cut(s) 747
BtsIMutI CAGTG 5 cut(s) 382, 736, 747, 863, 884
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 1 cut(s) 513
CfoI GCGC 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 318, 839
CviAII CATG 7 cut(s) 53, 409, 457, 541, 560, 682, 691
DdeI CTNAG 1 cut(s) 922
DpnI GATC 5 cut(s) 258, 862, 870, 875, 900
DpnII GATC 5 cut(s) 256, 860, 868, 873, 898
DraIII CACNNNGTG 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 2 cut(s) 540, 939
Eco47I GGWCC 1 cut(s) 839
Eco57I CTGAAG 2 cut(s) 111, 479
Eco88I CYCGRG 2 cut(s) 1001, 1043
Eco91I GGTNACC 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 318
EcoO65I GGTNACC 1 cut(s) 65
EcoRI GAATTC 2 cut(s) 610, 1022
EcoRII CCWGG 3 cut(s) 97, 259, 952
EcoT14I CCWWGG 2 cut(s) 540, 939
EcoT22I ATGCAT 1 cut(s) 414
ErhI CCWWGG 2 cut(s) 540, 939
FaeI CATG 7 cut(s) 56, 412, 460, 544, 563, 685, 694
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 1 cut(s) 1025
FatI CATG 7 cut(s) 52, 408, 456, 540, 559, 681, 690
FauI CCCGC 1 cut(s) 586
FblI GTMKAC 1 cut(s) 777
Fnu4HI GCNGC 2 cut(s) 516, 833
FokI GGATG 8 cut(s) 341, 390, 399, 438, 582, 619, 673, 712
Fsp4HI GCNGC 2 cut(s) 516, 833
FspBI CTAG 1 cut(s) 992
GlaI GCGC 1 cut(s) 247
GluI GCNGC 2 cut(s) 516, 833
GsuI CTGGAG 1 cut(s) 395
HaeIII GGCC 1 cut(s) 320
HhaI GCGC 1 cut(s) 248
Hin1II CATG 7 cut(s) 56, 412, 460, 544, 563, 685, 694
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HincII GTYRAC 2 cut(s) 466, 524
HindII GTYRAC 2 cut(s) 466, 524
HinfI GANTC 9 cut(s) 107, 178, 232, 241, 448, 536, 977, 995, 1034
HpaI GTTAAC 1 cut(s) 466
HphI GGTGA 2 cut(s) 77, 640
Hpy166II GTNNAC 4 cut(s) 197, 466, 524, 778
Hpy188III TCNNGA 5 cut(s) 175, 238, 533, 765, 1001
Hpy8I GTNNAC 4 cut(s) 197, 466, 524, 778
Hpy99I CGWCG 1 cut(s) 1073
HpyAV CCTTC 2 cut(s) 503, 981
HpyCH4III ACNGT 3 cut(s) 386, 557, 1080
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 5 cut(s) 412, 639, 725, 752, 832
HpyF3I CTNAG 1 cut(s) 922
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 7 cut(s) 56, 412, 460, 544, 563, 685, 694
HspAI GCGC 1 cut(s) 246
KspAI GTTAAC 1 cut(s) 466
Kzo9I GATC 5 cut(s) 256, 860, 868, 873, 898
LmnI GCTCC 4 cut(s) 100, 376, 935, 962
Lsp1109I GCAGC 2 cut(s) 527, 844
LweI GCATC 4 cut(s) 388, 421, 734, 761
MaeI CTAG 1 cut(s) 992
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 2 cut(s) 9, 65
MalI GATC 5 cut(s) 258, 862, 870, 875, 900
MbiI CCGCTC 1 cut(s) 190
MboI GATC 5 cut(s) 256, 860, 868, 873, 898
MboII GAAGA 7 cut(s) 16, 27, 117, 230, 305, 308, 355
MflI RGATCY 3 cut(s) 256, 873, 898
MlyI GAGTC 3 cut(s) 226, 235, 989
MmeI TCCRAC 2 cut(s) 270, 942
MnlI CCTC 5 cut(s) 85, 214, 513, 1003, 1012
Mph1103I ATGCAT 1 cut(s) 414
MroXI GAANNNNTTC 1 cut(s) 106
MseI TTAA 4 cut(s) 228, 363, 465, 567
MspR9I CCNGG 3 cut(s) 99, 261, 954
MvaI CCWGG 3 cut(s) 99, 261, 954
MvnI CGCG 1 cut(s) 246
NcoI CCATGG 1 cut(s) 540
NdeII GATC 5 cut(s) 256, 860, 868, 873, 898
NlaIII CATG 7 cut(s) 56, 412, 460, 544, 563, 685, 694
NlaIV GGNNCC 7 cut(s) 96, 423, 432, 657, 841, 937, 958
NmuCI GTSAC 1 cut(s) 65
NsiI ATGCAT 1 cut(s) 414
NspI RCATGY 1 cut(s) 685
PciI ACATGT 1 cut(s) 681
PdmI GAANNNNTTC 1 cut(s) 106
PfeI GAWTC 6 cut(s) 107, 178, 448, 536, 977, 1034
PfoI TCCNGGA 2 cut(s) 97, 259
PkrI GCNGC 2 cut(s) 517, 834
PleI GAGTC 3 cut(s) 226, 235, 989
PpsI GAGTC 3 cut(s) 226, 235, 989
PscI ACATGT 1 cut(s) 681
Psp6I CCWGG 3 cut(s) 97, 259, 952
PspEI GGTNACC 1 cut(s) 65
PspGI CCWGG 3 cut(s) 97, 259, 952
PspN4I GGNNCC 7 cut(s) 96, 423, 432, 657, 841, 937, 958
PspPI GGNCC 2 cut(s) 318, 839
PsuI RGATCY 3 cut(s) 256, 873, 898
SaqAI TTAA 4 cut(s) 228, 363, 465, 567
SatI GCNGC 2 cut(s) 516, 833
Sau3AI GATC 5 cut(s) 256, 860, 868, 873, 898
Sau96I GGNCC 2 cut(s) 318, 839
SchI GAGTC 3 cut(s) 226, 235, 989
ScrFI CCNGG 3 cut(s) 99, 261, 954
SfaNI GCATC 4 cut(s) 388, 421, 734, 761
SinI GGWCC 1 cut(s) 839
SsiI CCGC 2 cut(s) 190, 579
SspMI CTAG 1 cut(s) 992
StyD4I CCNGG 3 cut(s) 97, 259, 952
StyI CCWWGG 2 cut(s) 540, 939
TaaI ACNGT 3 cut(s) 386, 557, 1080
TaiI ACGT 1 cut(s) 11
TaqI TCGA 2 cut(s) 395, 1032
TfiI GAWTC 6 cut(s) 107, 178, 448, 536, 977, 1034
Tru1I TTAA 4 cut(s) 228, 363, 465, 567
Tru9I TTAA 4 cut(s) 228, 363, 465, 567
TscAI CASTG 5 cut(s) 389, 736, 754, 870, 884
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 2 cut(s) 515, 832
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 4 cut(s) 17, 224, 440, 623
TspGWI ACGGA 1 cut(s) 414
TspRI CASTG 5 cut(s) 389, 736, 754, 870, 884
VpaK11BI GGWCC 1 cut(s) 839
XapI RAATTY 5 cut(s) 610, 699, 883, 984, 1022
XceI RCATGY 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 777
XmnI GAANNNNTTC 1 cut(s) 106
XspI CTAG 1 cut(s) 992
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.