Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8458617.1

Orthogroup ID

OG0001091

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1288

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8458617.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 293 bp

tatggcagaaactggaagaagaaaatggagaatttttcaaggcctaccacctaaggctaaagctcaaagatcaaattcatatgtataaccggttgcttgagcagcaataccatctgatgaaacagcaagagcgtgcagagtttgagatagctcctgtgcagaatggaatgcgtcacatgcctggttatttcgggatcaattccatggccaccatatctggttgtcatggagttaatggaatacctgctccaggaaacttccaccgtatgcaacataagtgtgcgaaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

96

Amino Acids

11.31

Weight (kDa)

8.65

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46420 AT2G46420 AT2G46420 AT3G61700 AT3G61700 AT3G61700 AT3G61700
fragaria_vesca	FvH4_7g16290 FvH4_7g16290 FvH4_7g16290 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180
malus_domestica	MD01G1079500.v1.1 MD01G1216500.v1.1 MD07G1148300.v1.1 MD07G1286500.v1.1 MD12G1148300.v1.1
prunus_persica	Prupe.2G186600_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1
pyrus_communis	pycom01g10780 pycom01g22720 pycom07g14730 pycom07g25960
rosa_chinensis	RchiOBHm_Chr1g0359301 RchiOBHm_Chr1g0380221
rosa_laevigata	RLG00000026317 RLG00000027882
rosa_multiflora	Rmu_co8458617.1_g000001 Rmu_sc0001232.1_g000028 Rmu_sc0002689.1_g000001 Rmu_ssc0000135.1_g000052
rosa_roxburghii	Rroxscaffold_4G00279550 Rroxscaffold_4G00297130
rosa_rugosa	Rorug01G0269300 Rorug01G0269400 Rorug01G0419200
rosa_samantha	Rh1AG283300 Rh1AG444000 Rh1BG249500 Rh1BG399100 Rh1CG267400 Rh1CG412500 Rh1DG278400 Rh1DG429600
rosa_wichuraiana	Rw1G025150 Rw1G038560 Rw1G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	252
AclWI	GGATC	1 cut(s)	202
AcoI	YGGCCR	1 cut(s)	206
AcsI	RAATTY	2 cut(s)	31, 74
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgeI	ACCGGT	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	39
AjnI	CCWGG	2 cut(s)	180, 249
AluBI	AGCT	2 cut(s)	63, 151
AluI	AGCT	2 cut(s)	63, 151
AlwI	GGATC	1 cut(s)	202
AlwNI	CAGNNNCTG	1 cut(s)	12
AoxI	GGCC	2 cut(s)	41, 206
ApeKI	GCWGC	1 cut(s)	102
ApoI	RAATTY	2 cut(s)	31, 74
AsiGI	ACCGGT	1 cut(s)	89
AxyI	CCTNAGG	1 cut(s)	52
BalI	TGGCCA	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	1 cut(s)	119
BciT130I	CCWGG	2 cut(s)	182, 251
BfuAI	ACCTGC	1 cut(s)	252
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	182, 251
BmrFI	CCNGG	2 cut(s)	182, 251
BpmI	CTGGAG	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	17
Bse21I	CCTNAGG	1 cut(s)	52
BseBI	CCWGG	2 cut(s)	182, 251
BseDI	CCNNGG	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	114
BsgI	GTGCAG	2 cut(s)	155, 178
BshFI	GGCC	2 cut(s)	43, 208
BshTI	ACCGGT	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	2 cut(s)	43, 208
Bsp143I	GATC	2 cut(s)	69, 194
Bsp19I	CCATGG	1 cut(s)	203
BspANI	GGCC	2 cut(s)	43, 208
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	2 cut(s)	69, 194
BssT1I	CCWWGG	1 cut(s)	203
Bst2UI	CCWGG	2 cut(s)	182, 251
Bst4CI	ACNGT	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	52
BstDSI	CCRYGG	1 cut(s)	203
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstKTI	GATC	2 cut(s)	72, 197
BstMBI	GATC	2 cut(s)	69, 194
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 177
BstNI	CCWGG	2 cut(s)	182, 251
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	180, 249
BstV1I	GCAGC	1 cut(s)	114
Bsu36I	CCTNAGG	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	43, 208
BtgI	CCRYGG	1 cut(s)	203
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	134
CaiI	CAGNNNCTG	1 cut(s)	12
Cfr10I	RCCGGY	1 cut(s)	89
CseI	GACGC	1 cut(s)	160
CspAI	ACCGGT	1 cut(s)	89
CviAII	CATG	3 cut(s)	177, 204, 226
CviJI	RGCY	5 cut(s)	43, 57, 63, 151, 208
CviKI_1	RGCY	5 cut(s)	43, 57, 63, 151, 208
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	2 cut(s)	71, 196
DpnII	GATC	2 cut(s)	69, 194
EaeI	YGGCCR	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	203
Eco147I	AGGCCT	1 cut(s)	43
Eco81I	CCTNAGG	1 cut(s)	52
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	180, 249
EcoT14I	CCWWGG	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	3 cut(s)	180, 207, 229
FatI	CATG	3 cut(s)	176, 203, 225
FauNDI	CATATG	1 cut(s)	80
Fnu4HI	GCNGC	1 cut(s)	103
Fsp4HI	GCNGC	1 cut(s)	103
GluI	GCNGC	1 cut(s)	103
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	43, 208
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	1 cut(s)	160
Hin1II	CATG	3 cut(s)	180, 207, 229
HpaII	CCGG	1 cut(s)	90
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	1 cut(s)	192
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	3 cut(s)	136, 159, 270
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 177
HpyF3I	CTNAG	1 cut(s)	52
Hsp92II	CATG	3 cut(s)	180, 207, 229
Kzo9I	GATC	2 cut(s)	69, 194
LmnI	GCTCC	2 cut(s)	156, 252
LpnPI	CCDG	8 cut(s)	103, 167, 167, 194, 203, 236, 257, 263
Lsp1109I	GCAGC	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	71, 196
MboI	GATC	2 cut(s)	69, 194
MboII	GAAGA	2 cut(s)	28, 31
MlsI	TGGCCA	1 cut(s)	208
MluCI	AATT	3 cut(s)	31, 74, 198
MluNI	TGGCCA	1 cut(s)	208
Mox20I	TGGCCA	1 cut(s)	208
MscI	TGGCCA	1 cut(s)	208
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	278
Msp20I	TGGCCA	1 cut(s)	208
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	2 cut(s)	182, 251
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	2 cut(s)	182, 251
MwoI	GCNNNNNNNGC	2 cut(s)	102, 177
NcoI	CCATGG	1 cut(s)	203
NdeI	CATATG	1 cut(s)	80
NdeII	GATC	2 cut(s)	69, 194
NlaIII	CATG	3 cut(s)	180, 207, 229
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	180
PceI	AGGCCT	1 cut(s)	43
PctI	GAATGC	1 cut(s)	173
PfoI	TCCNGGA	1 cut(s)	249
PinAI	ACCGGT	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	104
Psp6I	CCWGG	2 cut(s)	180, 249
PspGI	CCWGG	2 cut(s)	180, 249
PstNI	CAGNNNCTG	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	2 cut(s)	69, 194
ScrFI	CCNGG	2 cut(s)	182, 251
SetI	ASST	4 cut(s)	53, 65, 153, 246
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	3 cut(s)	31, 74, 198
SseBI	AGGCCT	1 cut(s)	43
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	2 cut(s)	180, 249
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	265
TasI	AATT	3 cut(s)	31, 74, 198
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	102
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	67, 133
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	2 cut(s)	31, 74
XceI	RCATGY	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.