Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001091

Physical Location & Seq

Genomic Coordinates Forward (+)

64195930 .. 64200679

Gene Structure 4750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG429600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGATCCACAGAATCCAGCAGAAAAGCGATTCTCACTGCGCAATGACAAACAAAGTAGCATTGCAAAGAACAAGAGCAGCAAAGTCACACTTCAAGATATTCAAGTTGTCCAGAATTTGATTGAAAGGTGTCTGCAGTTGTATATGAACAGAGATGAAGTCATCAATACCCTCTTAGATCGTGCTAGGATTGAGCCTGAGTTTACAAAACTGGTATGGCAGAAACTGGAAGAAGAAAATGCAGAATTTTTCAAGGCCTACCACCTAAGGCTAAAGCTCAAAGATCAAATTCATATGTATAACCGGTTGCTTGAGCAGCAATACCATCTGATGAAACAGCAAGAGCGTGCAGAGTTTGAGATAGCTCCTGTGCAGAATGGAATGCATCACATGCCTGTCAACAATTTATCTATGGAATGTGCCATCATGCAGCAGCATCTTATTCCATCTACAGGTTATTTCGGGATCAATTCCATGGGCACCATATCTGGTTGTCATGGAGTTAATGGAATACCTGCTCCAGGAAACTTCCACCGTATGCAACATAAGTGTGCGAAAGAAAGAAGTCCAGCTAATACAGTACCTTTCTTCCCTGCTGGTGATATGAAGTTAGATGGGGCTTCAAGTCCTGTAGCAGTGGCATTGAATGGACAATTTTCCTTCACTCCTGAAACATCAGGGCTAAATCTGGACACACCAGTGCTTGACTCTGCATTTACTTCTGATATAGCAAATCTAGAGAGGTTGCGTCTTGGAGCAGATGGTCAGAACACATGTCCTGAGGAGTCACTTCAATCATCGGATCAGATGACTTGGGATTTTGGCTTCTCTAATACCGCTGAATGGTCAAACTTTCAAGAGTTTGGACCAGCGGGGAACTATTCAGGCTCAGAGTTTCAACCTTCTCAGTTGGATATTAATCTTGATTCTGCAGAGCAAAATGACATGGTTGATGGGTTCCTTCTCGATGGTCCACCTGGTCAAGGCACTCAACCTGCAGAGGAAACTAAGCCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

339

Amino Acids

38.05

Weight (kDa)

5.04

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_thal_3526	PF09713	37 - 88	9e-26	Plant protein 1589 of unknown function (A_thal_3526)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46420 AT2G46420 AT2G46420 AT3G61700 AT3G61700 AT3G61700 AT3G61700
fragaria_vesca	FvH4_7g16290 FvH4_7g16290 FvH4_7g16290 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180
malus_domestica	MD01G1079500.v1.1 MD01G1216500.v1.1 MD07G1148300.v1.1 MD07G1286500.v1.1 MD12G1148300.v1.1
prunus_persica	Prupe.2G186600_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1
pyrus_communis	pycom01g10780 pycom01g22720 pycom07g14730 pycom07g25960
rosa_chinensis	RchiOBHm_Chr1g0359301 RchiOBHm_Chr1g0380221
rosa_laevigata	RLG00000026317 RLG00000027882
rosa_multiflora	Rmu_co8458617.1_g000001 Rmu_sc0001232.1_g000028 Rmu_sc0002689.1_g000001 Rmu_ssc0000135.1_g000052
rosa_roxburghii	Rroxscaffold_4G00279550 Rroxscaffold_4G00297130
rosa_rugosa	Rorug01G0269300 Rorug01G0269400 Rorug01G0419200
rosa_samantha	Rh1AG283300 Rh1AG444000 Rh1BG249500 Rh1BG399100 Rh1CG267400 Rh1CG412500 Rh1DG278400 Rh1DG429600
rosa_wichuraiana	Rw1G025150 Rw1G038560 Rw1G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	41
Acc36I	ACCTGC	2 cut(s)	523, 1003
AccB1I	GGYRCC	1 cut(s)	479
AciI	CCGC	2 cut(s)	837, 872
AclWI	GGATC	3 cut(s)	12, 473, 810
AcsI	RAATTY	3 cut(s)	115, 245, 288
AfaI	GTAC	1 cut(s)	582
AfiI	CCNNNNNNNGG	4 cut(s)	452, 521, 843, 983
AflIII	ACRYGT	1 cut(s)	773
AgeI	ACCGGT	1 cut(s)	303
AgsI	TTSAA	9 cut(s)	95, 104, 125, 253, 624, 646, 794, 857, 899
AjnI	CCWGG	2 cut(s)	520, 976
AleI	CACNNNNGTG	1 cut(s)	698
AluBI	AGCT	3 cut(s)	277, 365, 572
AluI	AGCT	3 cut(s)	277, 365, 572
AlwI	GGATC	3 cut(s)	12, 473, 810
AlwNI	CAGNNNCTG	1 cut(s)	226
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	4 cut(s)	78, 316, 430, 433
ApoI	RAATTY	3 cut(s)	115, 245, 288
AseI	ATTAAT	1 cut(s)	918
AsiGI	ACCGGT	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	866, 971
AsuHPI	GGTGA	1 cut(s)	611
AvaII	GGWCC	2 cut(s)	866, 971
AxyI	CCTNAGG	2 cut(s)	266, 780
BaeGI	GKGCMC	1 cut(s)	482
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	479
BbvI	GCAGC	4 cut(s)	90, 328, 442, 445
BccI	CCATC	7 cut(s)	333, 431, 454, 608, 755, 947, 962
BciT130I	CCWGG	2 cut(s)	522, 978
BfaI	CTAG	2 cut(s)	186, 737
BfmI	CTRYAG	5 cut(s)	134, 450, 630, 930, 996
BfuAI	ACCTGC	2 cut(s)	523, 1003
BisI	GCNGC	4 cut(s)	79, 317, 431, 434
BlsI	GCNGC	4 cut(s)	80, 318, 432, 435
Bme1390I	CCNGG	2 cut(s)	522, 978
Bme18I	GGWCC	2 cut(s)	866, 971
BmgT120I	GGNCC	2 cut(s)	866, 971
BmiI	GGNNCC	3 cut(s)	6, 481, 959
BmrFI	CCNGG	2 cut(s)	522, 978
BmsI	GCATC	2 cut(s)	394, 445
BpmI	CTGGAG	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	332
BsaBI	GATNNNNATC	1 cut(s)	918
BsaJI	CCNNGG	1 cut(s)	474
BsaWI	WCCGGW	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	4 cut(s)	452, 521, 843, 983
Bse118I	RCCGGY	1 cut(s)	303
Bse1I	ACTGG	3 cut(s)	216, 231, 698
Bse21I	CCTNAGG	2 cut(s)	266, 780
Bse3DI	GCAATG	2 cut(s)	49, 60
Bse8I	GATNNNNATC	1 cut(s)	918
BseBI	CCWGG	2 cut(s)	522, 978
BseDI	CCNNGG	1 cut(s)	474
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	4 cut(s)	452, 521, 843, 983
BseMI	GCAATG	2 cut(s)	49, 60
BseMII	CTCAG	4 cut(s)	189, 771, 903, 920
BseNI	ACTGG	3 cut(s)	216, 231, 698
BseRI	GAGGAG	1 cut(s)	797
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	4 cut(s)	90, 328, 442, 445
BsgI	GTGCAG	2 cut(s)	369, 392
BshFI	GGCC	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	479
BshTI	ACCGGT	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	304
BslI	CCNNNNNNNGG	4 cut(s)	452, 521, 843, 983
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp143I	GATC	5 cut(s)	4, 178, 283, 465, 802
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	2 cut(s)	837, 872
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	4 cut(s)	190, 772, 902, 919
BspLI	GGNNCC	3 cut(s)	6, 481, 959
BspMAI	CTGCAG	3 cut(s)	138, 934, 1000
BspMI	ACCTGC	2 cut(s)	523, 1003
BspPI	GGATC	3 cut(s)	12, 473, 810
BspT107I	GGYRCC	1 cut(s)	479
BsrDI	GCAATG	2 cut(s)	49, 60
BsrFI	RCCGGY	1 cut(s)	303
BsrI	ACTGG	3 cut(s)	216, 231, 698
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	474
BssMI	GATC	5 cut(s)	4, 178, 283, 465, 802
BssT1I	CCWWGG	1 cut(s)	474
Bst2UI	CCWGG	2 cut(s)	522, 978
Bst4CI	ACNGT	2 cut(s)	536, 580
BstAPI	GCANNNNNTGC	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	7 cut(s)	175, 198, 266, 780, 889, 906, 1008
BstDSI	CCRYGG	1 cut(s)	474
BstENI	CCTNNNNNAGG	2 cut(s)	519, 981
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	5 cut(s)	7, 181, 286, 468, 805
BstMBI	GATC	5 cut(s)	4, 178, 283, 465, 802
BstMWI	GCNNNNNNNGC	2 cut(s)	316, 391
BstNI	CCWGG	2 cut(s)	522, 978
BstNSI	RCATGY	2 cut(s)	394, 777
BstSCI	CCNGG	2 cut(s)	520, 976
BstSFI	CTRYAG	5 cut(s)	134, 450, 630, 930, 996
BstSLI	GKGCMC	1 cut(s)	482
BstV1I	GCAGC	4 cut(s)	90, 328, 442, 445
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	2 cut(s)	266, 780
BsuRI	GGCC	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	474
BtsI	GCAGTG	2 cut(s)	35, 642
BtsIMutI	CAGTG	3 cut(s)	35, 642, 705
BveI	ACCTGC	2 cut(s)	523, 1003
Cac8I	GCNNGC	1 cut(s)	348
CaiI	CAGNNNCTG	1 cut(s)	226
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	866, 971
CseI	GACGC	1 cut(s)	737
CsiI	ACCWGGT	1 cut(s)	976
Csp6I	GTAC	1 cut(s)	581
CspAI	ACCGGT	1 cut(s)	303
CviAII	CATG	6 cut(s)	391, 427, 475, 497, 774, 946
CviQI	GTAC	1 cut(s)	581
DdeI	CTNAG	7 cut(s)	175, 198, 266, 780, 889, 906, 1008
DpnI	GATC	5 cut(s)	6, 180, 285, 467, 804
DpnII	GATC	5 cut(s)	4, 178, 283, 465, 802
Eco130I	CCWWGG	1 cut(s)	474
Eco147I	AGGCCT	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	866, 971
Eco81I	CCTNAGG	2 cut(s)	266, 780
EcoNI	CCTNNNNNAGG	2 cut(s)	519, 981
EcoRII	CCWGG	2 cut(s)	520, 976
EcoT14I	CCWWGG	1 cut(s)	474
EcoT22I	ATGCAT	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	6 cut(s)	394, 430, 478, 500, 777, 949
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FatI	CATG	6 cut(s)	390, 426, 474, 496, 773, 945
FauI	CCCGC	1 cut(s)	865
FauNDI	CATATG	1 cut(s)	294
Fnu4HI	GCNGC	4 cut(s)	79, 317, 431, 434
Fsp4HI	GCNGC	4 cut(s)	79, 317, 431, 434
FspBI	CTAG	2 cut(s)	186, 737
FspI	TGCGCA	1 cut(s)	41
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	4 cut(s)	79, 317, 431, 434
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	304
HgaI	GACGC	1 cut(s)	737
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	6 cut(s)	394, 430, 478, 500, 777, 949
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	5 cut(s)	13, 30, 707, 785, 926
HpaII	CCGG	1 cut(s)	304
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	3 cut(s)	204, 400, 974
Hpy188I	TCNGA	6 cut(s)	330, 724, 768, 802, 807, 892
Hpy8I	GTNNAC	3 cut(s)	204, 400, 974
HpyAV	CCTTC	3 cut(s)	670, 912, 971
HpyCH4III	ACNGT	2 cut(s)	536, 580
HpyF10VI	GCNNNNNNNGC	2 cut(s)	316, 391
HpyF3I	CTNAG	7 cut(s)	175, 198, 266, 780, 889, 906, 1008
Hsp92II	CATG	6 cut(s)	394, 430, 478, 500, 777, 949
HspAI	GCGC	1 cut(s)	40
Kzo9I	GATC	5 cut(s)	4, 178, 283, 465, 802
LmnI	GCTCC	3 cut(s)	370, 523, 755
Lsp1109I	GCAGC	4 cut(s)	90, 328, 442, 445
LweI	GCATC	2 cut(s)	394, 445
MabI	ACCWGGT	1 cut(s)	976
MaeI	CTAG	2 cut(s)	186, 737
MaeIII	GTNAC	2 cut(s)	85, 786
MalI	GATC	5 cut(s)	6, 180, 285, 467, 804
MboI	GATC	5 cut(s)	4, 178, 283, 465, 802
MboII	GAAGA	3 cut(s)	242, 245, 580
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	6 cut(s)	115, 245, 288, 403, 469, 653
MlyI	GAGTC	2 cut(s)	701, 794
MmeI	TCCRAC	1 cut(s)	891
MnlI	CCTC	4 cut(s)	182, 735, 775, 994
Mph1103I	ATGCAT	1 cut(s)	387
MseI	TTAA	2 cut(s)	504, 918
MslI	CAYNNNNRTG	2 cut(s)	549, 698
MspA1I	CMGCKG	2 cut(s)	839, 872
MspI	CCGG	1 cut(s)	304
MspR9I	CCNGG	2 cut(s)	522, 978
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	2 cut(s)	522, 978
MwoI	GCNNNNNNNGC	2 cut(s)	316, 391
NcoI	CCATGG	1 cut(s)	474
NdeI	CATATG	1 cut(s)	294
NdeII	GATC	5 cut(s)	4, 178, 283, 465, 802
NlaIII	CATG	6 cut(s)	394, 430, 478, 500, 777, 949
NlaIV	GGNNCC	3 cut(s)	6, 481, 959
NmuCI	GTSAC	2 cut(s)	85, 786
NsbI	TGCGCA	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	387
NspI	RCATGY	2 cut(s)	394, 777
OliI	CACNNNNGTG	1 cut(s)	698
PceI	AGGCCT	1 cut(s)	257
PciI	ACATGT	1 cut(s)	773
PctI	GAATGC	1 cut(s)	387
PfeI	GAWTC	3 cut(s)	13, 30, 926
PfoI	TCCNGGA	1 cut(s)	520
PinAI	ACCGGT	1 cut(s)	303
PkrI	GCNGC	4 cut(s)	80, 318, 432, 435
PleI	GAGTC	2 cut(s)	701, 793
PpsI	GAGTC	2 cut(s)	701, 793
PscI	ACATGT	1 cut(s)	773
PshBI	ATTAAT	1 cut(s)	918
Psp6I	CCWGG	2 cut(s)	520, 976
PspGI	CCWGG	2 cut(s)	520, 976
PspN4I	GGNNCC	3 cut(s)	6, 481, 959
PspPI	GGNCC	2 cut(s)	866, 971
PstI	CTGCAG	3 cut(s)	138, 934, 1000
PstNI	CAGNNNCTG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	582
RsaNI	GTAC	1 cut(s)	581
RseI	CAYNNNNRTG	2 cut(s)	549, 698
SaqAI	TTAA	2 cut(s)	504, 918
SatI	GCNGC	4 cut(s)	79, 317, 431, 434
Sau3AI	GATC	5 cut(s)	4, 178, 283, 465, 802
Sau96I	GGNCC	2 cut(s)	866, 971
SchI	GAGTC	2 cut(s)	701, 794
ScrFI	CCNGG	2 cut(s)	522, 978
SduI	GDGCHC	1 cut(s)	482
SexAI	ACCWGGT	1 cut(s)	976
SfaNI	GCATC	2 cut(s)	394, 445
SfcI	CTRYAG	5 cut(s)	134, 450, 630, 930, 996
SinI	GGWCC	2 cut(s)	866, 971
SmiMI	CAYNNNNRTG	2 cut(s)	549, 698
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	6 cut(s)	115, 245, 288, 403, 469, 653
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	2 cut(s)	837, 872
SspMI	CTAG	2 cut(s)	186, 737
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	520, 976
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	2 cut(s)	536, 580
TaqI	TCGA	1 cut(s)	966
TasI	AATT	6 cut(s)	115, 245, 288, 403, 469, 653
TfiI	GAWTC	3 cut(s)	13, 30, 926
Tru1I	TTAA	2 cut(s)	504, 918
Tru9I	TTAA	2 cut(s)	504, 918
TscAI	CASTG	3 cut(s)	42, 642, 705
TseFI	GTSAC	2 cut(s)	85, 786
TseI	GCWGC	4 cut(s)	78, 316, 430, 433
Tsp45I	GTSAC	2 cut(s)	85, 786
TspDTI	ATGAA	5 cut(s)	161, 171, 281, 347, 620
TspRI	CASTG	3 cut(s)	42, 642, 705
VpaK11BI	GGWCC	2 cut(s)	866, 971
VspI	ATTAAT	1 cut(s)	918
XagI	CCTNNNNNAGG	2 cut(s)	519, 981
XapI	RAATTY	3 cut(s)	115, 245, 288
XbaI	TCTAGA	1 cut(s)	736
XceI	RCATGY	2 cut(s)	394, 777
XspI	CTAG	2 cut(s)	186, 737
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.