Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001232.1

Orthogroup ID

OG0001091

Physical Location & Seq

Genomic Coordinates Forward (+)

110723 .. 115203

Gene Structure 4481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001232.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggatccacagaatccagcagaaaagcgattctcactgcgcaatgacaaacaaagtagcattgcaaagaacaagagcagcaaagtcacacttcaagatattcaagttgtccagaatttgattgaaaggtgtctgcagttgtatatgaacagagatgaagtcatcaataccctcttagatcgtgctaggattgagcctgagtttacaaaactggtatggcagaaactggaagaagaaaatggagaatttttcaaggcctaccacctaaggctaaagctcaaagatcaaattcatatgtataaccggttgcttgagcagcaataccatctgatgaaacagcaagagcgtgcagagtttgagatagctcctgtgcagaatggaatgcatcacatgcctgtcaacaatttatctatggaatgtgccatcatgcagcagcatcttattccatctacaggttatttcgggatcaattccatggccaccatatctggttgtcatggagttaatggaatacctgctccaggaaacttccaccgtatgcaacataagtgtgcgaaagaaagaagtccagctaatacagtacctttcttccctgctggtgatatgaagttagatggggcttcaagtcctgtagcagtgggattgaatggacaattttccttcactcctgctttgttggcagccagcggcaggtacagcagcaccaacaaatcagggccgagggacaacagcgcctcaccagccgccggcacaccgctcttagcagatgatgccccggagccccacccacagcaagtgataatgccagtgcaccatcaaaactggtggaagaattgcaggaactgttcccataaattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

286

Amino Acids

32.33

Weight (kDa)

8.69

Isoelectric Point (pI)

55.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46420 AT2G46420 AT2G46420 AT3G61700 AT3G61700 AT3G61700 AT3G61700
fragaria_vesca	FvH4_7g16290 FvH4_7g16290 FvH4_7g16290 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180
malus_domestica	MD01G1079500.v1.1 MD01G1216500.v1.1 MD07G1148300.v1.1 MD07G1286500.v1.1 MD12G1148300.v1.1
prunus_persica	Prupe.2G186600_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1
pyrus_communis	pycom01g10780 pycom01g22720 pycom07g14730 pycom07g25960
rosa_chinensis	RchiOBHm_Chr1g0359301 RchiOBHm_Chr1g0380221
rosa_laevigata	RLG00000026317 RLG00000027882
rosa_multiflora	Rmu_co8458617.1_g000001 Rmu_sc0001232.1_g000028 Rmu_sc0002689.1_g000001 Rmu_ssc0000135.1_g000052
rosa_roxburghii	Rroxscaffold_4G00279550 Rroxscaffold_4G00297130
rosa_rugosa	Rorug01G0269300 Rorug01G0269400 Rorug01G0419200
rosa_samantha	Rh1AG283300 Rh1AG444000 Rh1BG249500 Rh1BG399100 Rh1CG267400 Rh1CG412500 Rh1DG278400 Rh1DG429600
rosa_wichuraiana	Rw1G025150 Rw1G038560 Rw1G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	41
Acc36I	ACCTGC	2 cut(s)	523, 681
AccBSI	CCGCTC	1 cut(s)	757
AciI	CCGC	3 cut(s)	687, 744, 755
AclWI	GGATC	2 cut(s)	12, 473
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	4 cut(s)	115, 245, 288, 854
AfaI	GTAC	2 cut(s)	582, 695
AfiI	CCNNNNNNNGG	4 cut(s)	452, 521, 690, 746
AgeI	ACCGGT	1 cut(s)	303
AgsI	TTSAA	6 cut(s)	95, 104, 125, 253, 624, 646
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	3 cut(s)	277, 365, 572
AluI	AGCT	3 cut(s)	277, 365, 572
Alw21I	GWGCWC	1 cut(s)	813
Alw44I	GTGCAC	1 cut(s)	809
AlwI	GGATC	2 cut(s)	12, 473
AlwNI	CAGNNNCTG	2 cut(s)	226, 843
AoxI	GGCC	3 cut(s)	255, 477, 716
ApaLI	GTGCAC	1 cut(s)	809
ApeKI	GCWGC	6 cut(s)	78, 316, 430, 433, 680, 699
ApoI	RAATTY	4 cut(s)	115, 245, 288, 854
AsiGI	ACCGGT	1 cut(s)	303
AspLEI	GCGC	2 cut(s)	42, 734
AspS9I	GGNCC	1 cut(s)	716
AsuC2I	CCSGG	1 cut(s)	776
AsuHPI	GGTGA	2 cut(s)	611, 729
AxyI	CCTNAGG	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	813
BalI	TGGCCA	1 cut(s)	479
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	783
Bbv12I	GWGCWC	1 cut(s)	813
BbvI	GCAGC	6 cut(s)	90, 328, 442, 445, 692, 711
BccI	CCATC	5 cut(s)	333, 431, 454, 608, 822
BciT130I	CCWGG	1 cut(s)	522
BcnI	CCSGG	1 cut(s)	776
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	3 cut(s)	134, 450, 630
BfoI	RGCGCY	1 cut(s)	735
BfuAI	ACCTGC	2 cut(s)	523, 681
BisI	GCNGC	8 cut(s)	79, 317, 431, 434, 681, 688, 700, 744
BlsI	GCNGC	8 cut(s)	80, 318, 432, 435, 682, 689, 701, 745
Bme1390I	CCNGG	2 cut(s)	522, 776
BmgT120I	GGNCC	1 cut(s)	716
BmiI	GGNNCC	2 cut(s)	6, 780
BmrFI	CCNGG	2 cut(s)	522, 776
BmsI	GCATC	3 cut(s)	394, 445, 760
BpmI	CTGGAG	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	776
BsaJI	CCNNGG	3 cut(s)	474, 719, 774
BsaWI	WCCGGW	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	4 cut(s)	452, 521, 690, 746
Bse118I	RCCGGY	2 cut(s)	303, 746
Bse1I	ACTGG	4 cut(s)	216, 231, 806, 827
Bse21I	CCTNAGG	1 cut(s)	266
Bse3DI	GCAATG	2 cut(s)	49, 60
BseBI	CCWGG	1 cut(s)	522
BseDI	CCNNGG	3 cut(s)	474, 719, 774
BseLI	CCNNNNNNNGG	4 cut(s)	452, 521, 690, 746
BseMI	GCAATG	2 cut(s)	49, 60
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	4 cut(s)	216, 231, 806, 827
BseSI	GKGCMC	1 cut(s)	813
BseXI	GCAGC	6 cut(s)	90, 328, 442, 445, 692, 711
BsgI	GTGCAG	2 cut(s)	369, 392
BshFI	GGCC	3 cut(s)	257, 479, 718
BshTI	ACCGGT	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	813
BsiSI	CCGG	3 cut(s)	304, 747, 776
BslFI	GGGAC	1 cut(s)	737
BslI	CCNNNNNNNGG	4 cut(s)	452, 521, 690, 746
BsmFI	GGGAC	1 cut(s)	737
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	3 cut(s)	257, 479, 718
Bsp1286I	GDGCHC	2 cut(s)	783, 813
Bsp143I	GATC	4 cut(s)	4, 178, 283, 465
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	3 cut(s)	687, 744, 755
BspANI	GGCC	3 cut(s)	257, 479, 718
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	6, 780
BspMAI	CTGCAG	1 cut(s)	138
BspMI	ACCTGC	2 cut(s)	523, 681
BspPI	GGATC	2 cut(s)	12, 473
BsrBI	CCGCTC	1 cut(s)	757
BsrDI	GCAATG	2 cut(s)	49, 60
BsrFI	RCCGGY	2 cut(s)	303, 746
BsrI	ACTGG	4 cut(s)	216, 231, 806, 827
BssAI	RCCGGY	2 cut(s)	303, 746
BssECI	CCNNGG	3 cut(s)	474, 719, 774
BssMI	GATC	4 cut(s)	4, 178, 283, 465
BssT1I	CCWWGG	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	3 cut(s)	536, 580, 845
BstAPI	GCANNNNNTGC	2 cut(s)	391, 770
BstC8I	GCNNGC	3 cut(s)	348, 685, 748
BstDEI	CTNAG	4 cut(s)	175, 198, 266, 760
BstDSI	CCRYGG	1 cut(s)	474
BstENI	CCTNNNNNAGG	1 cut(s)	519
BstH2I	RGCGCY	1 cut(s)	735
BstHHI	GCGC	2 cut(s)	42, 734
BstKTI	GATC	4 cut(s)	7, 181, 286, 468
BstMBI	GATC	4 cut(s)	4, 178, 283, 465
BstMWI	GCNNNNNNNGC	6 cut(s)	316, 391, 677, 696, 740, 770
BstNI	CCWGG	1 cut(s)	522
BstNSI	RCATGY	1 cut(s)	394
BstSCI	CCNGG	2 cut(s)	520, 774
BstSFI	CTRYAG	3 cut(s)	134, 450, 630
BstSLI	GKGCMC	1 cut(s)	813
BstV1I	GCAGC	6 cut(s)	90, 328, 442, 445, 692, 711
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	266
BsuRI	GGCC	3 cut(s)	257, 479, 718
BtgI	CCRYGG	1 cut(s)	474
BtsI	GCAGTG	2 cut(s)	35, 642
BtsIMutI	CAGTG	3 cut(s)	35, 642, 813
BveI	ACCTGC	2 cut(s)	523, 681
Cac8I	GCNNGC	3 cut(s)	348, 685, 748
CaiI	CAGNNNCTG	2 cut(s)	226, 843
CfoI	GCGC	2 cut(s)	42, 734
Cfr10I	RCCGGY	2 cut(s)	303, 746
Cfr13I	GGNCC	1 cut(s)	716
Csp6I	GTAC	2 cut(s)	581, 694
CspAI	ACCGGT	1 cut(s)	303
CspCI	CAANNNNNGTGG	2 cut(s)	806, 841
CviAII	CATG	4 cut(s)	391, 427, 475, 497
CviQI	GTAC	2 cut(s)	581, 694
DdeI	CTNAG	4 cut(s)	175, 198, 266, 760
DpnI	GATC	4 cut(s)	6, 180, 285, 467
DpnII	GATC	4 cut(s)	4, 178, 283, 465
EaeI	YGGCCR	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	474
Eco147I	AGGCCT	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	783
Eco81I	CCTNAGG	1 cut(s)	266
EcoNI	CCTNNNNNAGG	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	474
EcoT22I	ATGCAT	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	783
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	4 cut(s)	394, 430, 478, 500
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	737
FatI	CATG	4 cut(s)	390, 426, 474, 496
FauNDI	CATATG	1 cut(s)	294
Fnu4HI	GCNGC	8 cut(s)	79, 317, 431, 434, 681, 688, 700, 744
FriOI	GRGCYC	1 cut(s)	783
Fsp4HI	GCNGC	8 cut(s)	79, 317, 431, 434, 681, 688, 700, 744
FspBI	CTAG	1 cut(s)	186
FspI	TGCGCA	1 cut(s)	41
GlaI	GCGC	2 cut(s)	41, 733
GluI	GCNGC	8 cut(s)	79, 317, 431, 434, 681, 688, 700, 744
GsuI	CTGGAG	1 cut(s)	504
HaeII	RGCGCY	1 cut(s)	735
HaeIII	GGCC	3 cut(s)	257, 479, 718
HapII	CCGG	3 cut(s)	304, 747, 776
HhaI	GCGC	2 cut(s)	42, 734
Hin1II	CATG	4 cut(s)	394, 430, 478, 500
Hin6I	GCGC	2 cut(s)	40, 732
HinP1I	GCGC	2 cut(s)	40, 732
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	2 cut(s)	13, 30
HpaII	CCGG	3 cut(s)	304, 747, 776
HphI	GGTGA	2 cut(s)	611, 729
Hpy166II	GTNNAC	3 cut(s)	204, 400, 811
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	3 cut(s)	95, 112, 463
Hpy8I	GTNNAC	3 cut(s)	204, 400, 811
HpyAV	CCTTC	1 cut(s)	670
HpyCH4III	ACNGT	3 cut(s)	536, 580, 845
HpyCH4V	TGCA	9 cut(s)	65, 136, 350, 373, 385, 430, 541, 811, 837
HpyF10VI	GCNNNNNNNGC	6 cut(s)	316, 391, 677, 696, 740, 770
HpyF3I	CTNAG	4 cut(s)	175, 198, 266, 760
Hsp92II	CATG	4 cut(s)	394, 430, 478, 500
HspAI	GCGC	2 cut(s)	40, 732
KroI	GCCGGC	1 cut(s)	746
KroNI	GCCGGC	1 cut(s)	748
Kzo9I	GATC	4 cut(s)	4, 178, 283, 465
LmnI	GCTCC	3 cut(s)	370, 523, 778
Lsp1109I	GCAGC	6 cut(s)	90, 328, 442, 445, 692, 711
LweI	GCATC	3 cut(s)	394, 445, 760
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	4 cut(s)	6, 180, 285, 467
MbiI	CCGCTC	1 cut(s)	757
MboI	GATC	4 cut(s)	4, 178, 283, 465
MboII	GAAGA	4 cut(s)	242, 245, 580, 841
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	783, 813
MlsI	TGGCCA	1 cut(s)	479
MluCI	AATT	8 cut(s)	115, 245, 288, 403, 469, 653, 832, 854
MluNI	TGGCCA	1 cut(s)	479
MnlI	CCTC	3 cut(s)	182, 714, 745
Mox20I	TGGCCA	1 cut(s)	479
Mph1103I	ATGCAT	1 cut(s)	387
MroNI	GCCGGC	1 cut(s)	746
MscI	TGGCCA	1 cut(s)	479
MseI	TTAA	1 cut(s)	504
MslI	CAYNNNNRTG	1 cut(s)	549
Msp20I	TGGCCA	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	687
MspI	CCGG	3 cut(s)	304, 747, 776
MspR9I	CCNGG	2 cut(s)	522, 776
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	522
MwoI	GCNNNNNNNGC	6 cut(s)	316, 391, 677, 696, 740, 770
NaeI	GCCGGC	1 cut(s)	748
NciI	CCSGG	1 cut(s)	776
NcoI	CCATGG	1 cut(s)	474
NdeI	CATATG	1 cut(s)	294
NdeII	GATC	4 cut(s)	4, 178, 283, 465
NgoMIV	GCCGGC	1 cut(s)	746
NlaIII	CATG	4 cut(s)	394, 430, 478, 500
NlaIV	GGNNCC	2 cut(s)	6, 780
NmeAIII	GCCGAG	1 cut(s)	744
NmuCI	GTSAC	1 cut(s)	85
NsbI	TGCGCA	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	387
NspI	RCATGY	1 cut(s)	394
PceI	AGGCCT	1 cut(s)	257
PctI	GAATGC	1 cut(s)	387
PdiI	GCCGGC	1 cut(s)	748
PfeI	GAWTC	2 cut(s)	13, 30
PfoI	TCCNGGA	1 cut(s)	520
PinAI	ACCGGT	1 cut(s)	303
PkrI	GCNGC	8 cut(s)	80, 318, 432, 435, 682, 689, 701, 745
Psp6I	CCWGG	1 cut(s)	520
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	2 cut(s)	6, 780
PspPI	GGNCC	1 cut(s)	716
PstI	CTGCAG	1 cut(s)	138
PstNI	CAGNNNCTG	2 cut(s)	226, 843
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	582, 695
RsaNI	GTAC	2 cut(s)	581, 694
RseI	CAYNNNNRTG	1 cut(s)	549
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	8 cut(s)	79, 317, 431, 434, 681, 688, 700, 744
Sau3AI	GATC	4 cut(s)	4, 178, 283, 465
Sau96I	GGNCC	1 cut(s)	716
ScrFI	CCNGG	2 cut(s)	522, 776
SduI	GDGCHC	2 cut(s)	783, 813
SetI	ASST	9 cut(s)	131, 267, 279, 367, 457, 517, 574, 586, 695
SfaNI	GCATC	3 cut(s)	394, 445, 760
SfcI	CTRYAG	3 cut(s)	134, 450, 630
SmiMI	CAYNNNNRTG	1 cut(s)	549
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	8 cut(s)	115, 245, 288, 403, 469, 653, 832, 854
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	3 cut(s)	687, 744, 755
SspMI	CTAG	1 cut(s)	186
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	520, 774
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	3 cut(s)	536, 580, 845
TasI	AATT	8 cut(s)	115, 245, 288, 403, 469, 653, 832, 854
TauI	GCSGC	2 cut(s)	690, 746
TfiI	GAWTC	2 cut(s)	13, 30
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	3 cut(s)	42, 642, 813
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	6 cut(s)	78, 316, 430, 433, 680, 699
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	5 cut(s)	161, 171, 281, 347, 620
TspRI	CASTG	3 cut(s)	42, 642, 813
VneI	GTGCAC	1 cut(s)	809
XagI	CCTNNNNNAGG	1 cut(s)	519
XapI	RAATTY	4 cut(s)	115, 245, 288, 854
XceI	RCATGY	1 cut(s)	394
XspI	CTAG	1 cut(s)	186
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.