Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001091

Physical Location & Seq

Genomic Coordinates Forward (+)

34839065 .. 34842406

Gene Structure 3342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1286500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAAGATATTGCAGGATAAACAGAAATCAACAGAAAAGCAATTTCCGCATAATGACCGACAAAATGGTGTTAGTGAGGTCCCTACGCTGGACTCTGGTTCAGTATCTATTTCCAGCAACAAGAGCACAAAAGTCACACGTGAAGATATTGAAGTTGTCCAGAATTTGATTGAAAGGTGTCTGCGATTGTATATGAACAAAAATGAAGTCGTCGATACCCTGTTAGATCGTGCTAGGATTGAGCCTGGCTTTACAAGCTTGGTACTGCAGAAATTGGAAGTAGAAAATGCAGAATTTTTCAAGGCTTACTACACGAGGCTAAAGCTGAAAAATCAAATAGTTATGTACAACCGTTTGCTCGAGCAACAATACCAGCTGATGAAACAGCAAGAGCCTCCAGAAGTTCCATTGCCTCCTATGCATAATGGAATGCATTACATGCCTGTTAACAATTTACCTATGGGATACCCCGTCATGCAGCAGCCTCCATTTCCGTCAAAGGGTCATCACCAAATCAATTCCATGGGCACCATATCGAGTTGTCATTTGGTCAATGGAATCCCTGCTCAAGGAAATTTCCACCATATGCCACTAAACTTATGTCAAGATGGTATCAAGACAGAGATGGTTTCAAGTCCAGTATCAGTGTCCAATGGCCAGTTTCCTTACACTCCATCAGCAATATCAGTGCTAGGTGCAGACACATCGGCGCTTGACTCTGCATTTCCTTCTCATTTCACAAATTTGGAGAGGTTCGGTATTGGAGCAGATGGTGGAAAGTTATCAGGGCAGGCACCCTGGAATTTCGGGCTTTTTGATACTGCTGGATGGCCAAACTTACCAGATCTTGGAGCACTTGGAAACTATTCGGGTTCACCCTTTCTGCCTTCCGACTCGGACGCTATGCTTGATTCTCCGCAGCAAAATGACATGGTGGAAGAGTTCTTTGTCGACCCTGGTCAAGGCTCTCAATCGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

327

Amino Acids

36.19

Weight (kDa)

5.28

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_thal_3526	PF09713	53 - 105	3.7e-23	Plant protein 1589 of unknown function (A_thal_3526)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46420 AT2G46420 AT2G46420 AT3G61700 AT3G61700 AT3G61700 AT3G61700
fragaria_vesca	FvH4_7g16290 FvH4_7g16290 FvH4_7g16290 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180
malus_domestica	MD01G1079500.v1.1 MD01G1216500.v1.1 MD07G1148300.v1.1 MD07G1286500.v1.1 MD12G1148300.v1.1
prunus_persica	Prupe.2G186600_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1
pyrus_communis	pycom01g10780 pycom01g22720 pycom07g14730 pycom07g25960
rosa_chinensis	RchiOBHm_Chr1g0359301 RchiOBHm_Chr1g0380221
rosa_laevigata	RLG00000026317 RLG00000027882
rosa_multiflora	Rmu_co8458617.1_g000001 Rmu_sc0001232.1_g000028 Rmu_sc0002689.1_g000001 Rmu_ssc0000135.1_g000052
rosa_roxburghii	Rroxscaffold_4G00279550 Rroxscaffold_4G00297130
rosa_rugosa	Rorug01G0269300 Rorug01G0269400 Rorug01G0419200
rosa_samantha	Rh1AG283300 Rh1AG444000 Rh1BG249500 Rh1BG399100 Rh1CG267400 Rh1CG412500 Rh1DG278400 Rh1DG429600
rosa_wichuraiana	Rw1G025150 Rw1G038560 Rw1G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	527, 793
AccB7I	CCANNNNNTGG	1 cut(s)	848
AccI	GTMKAC	1 cut(s)	951
AciI	CCGC	2 cut(s)	47, 917
AcoI	YGGCCR	2 cut(s)	655, 830
AcsI	RAATTY	5 cut(s)	163, 293, 574, 742, 802
AcvI	CACGTG	1 cut(s)	140
AfaI	GTAC	2 cut(s)	264, 347
AfiI	CCNNNNNNNGG	5 cut(s)	88, 500, 569, 848, 962
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	4 cut(s)	152, 173, 301, 633
AjnI	CCWGG	3 cut(s)	244, 797, 955
AluBI	AGCT	3 cut(s)	258, 325, 376
AluI	AGCT	3 cut(s)	258, 325, 376
Alw21I	GWGCWC	2 cut(s)	128, 856
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	2 cut(s)	655, 830
ApeKI	GCWGC	3 cut(s)	478, 481, 919
ApoI	RAATTY	5 cut(s)	163, 293, 574, 742, 802
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
Asp700I	GAANNNNTTC	1 cut(s)	865
AspLEI	GCGC	1 cut(s)	712
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	500, 867
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	530
BalI	TGGCCA	2 cut(s)	657, 832
BanI	GGYRCC	2 cut(s)	527, 793
BauI	CACGAG	1 cut(s)	313
BbrPI	CACGTG	1 cut(s)	140
Bbv12I	GWGCWC	2 cut(s)	128, 856
BbvI	GCAGC	3 cut(s)	490, 493, 931
BccI	CCATC	5 cut(s)	602, 619, 682, 764, 822
BcgI	CGANNNNNNTGC	2 cut(s)	687, 721
BciT130I	CCWGG	3 cut(s)	246, 799, 957
BciVI	GTATCC	1 cut(s)	458
BfaI	CTAG	2 cut(s)	234, 692
BfmI	CTRYAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	713
BfuI	GTATCC	1 cut(s)	458
BglII	AGATCT	1 cut(s)	844
BisI	GCNGC	3 cut(s)	479, 482, 920
BlsI	GCNGC	3 cut(s)	480, 483, 921
Bme1390I	CCNGG	3 cut(s)	246, 799, 957
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	3 cut(s)	81, 529, 795
BmrFI	CCNGG	3 cut(s)	246, 799, 957
BoxI	GACNNNNGTC	1 cut(s)	957
BpmI	CTGGAG	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	552
BsaAI	YACGTR	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	522, 797, 955
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 500, 569, 848, 962
Bse1I	ACTGG	2 cut(s)	638, 658
Bse3DI	GCAATG	1 cut(s)	407
BseBI	CCWGG	3 cut(s)	246, 799, 957
BseDI	CCNNGG	3 cut(s)	522, 797, 955
BseGI	GGATG	1 cut(s)	833
BseLI	CCNNNNNNNGG	5 cut(s)	88, 500, 569, 848, 962
BseMI	GCAATG	1 cut(s)	407
BseNI	ACTGG	2 cut(s)	638, 658
BseSI	GKGCMC	1 cut(s)	530
BseXI	GCAGC	3 cut(s)	490, 493, 931
BsgI	GTGCAG	1 cut(s)	717
BshFI	GGCC	2 cut(s)	657, 832
BshNI	GGYRCC	2 cut(s)	527, 793
BsiHKAI	GWGCWC	2 cut(s)	128, 856
BsiHKCI	CYCGRG	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	5 cut(s)	88, 500, 569, 848, 962
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	435
BsnI	GGCC	2 cut(s)	657, 832
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	3 cut(s)	128, 530, 856
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	226, 844
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	2 cut(s)	47, 917
BspANI	GGCC	2 cut(s)	657, 832
BspLI	GGNNCC	3 cut(s)	81, 529, 795
BspMAI	CTGCAG	1 cut(s)	270
BspT107I	GGYRCC	2 cut(s)	527, 793
BsrDI	GCAATG	1 cut(s)	407
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	638, 658
BssECI	CCNNGG	3 cut(s)	522, 797, 955
BssMI	GATC	2 cut(s)	226, 844
BssSI	CACGAG	1 cut(s)	313
BssT1I	CCWWGG	1 cut(s)	522
Bst2BI	CACGAG	1 cut(s)	313
Bst2UI	CCWGG	3 cut(s)	246, 799, 957
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	1 cut(s)	933
BstAPI	GCANNNNNTGC	1 cut(s)	439
BstAUI	TGTACA	1 cut(s)	345
BstBAI	YACGTR	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	792
BstDSI	CCRYGG	1 cut(s)	522
BstENI	CCTNNNNNAGG	2 cut(s)	567, 960
BstF5I	GGATG	1 cut(s)	833
BstH2I	RGCGCY	1 cut(s)	713
BstHHI	GCGC	1 cut(s)	712
BstKTI	GATC	2 cut(s)	229, 847
BstMBI	GATC	2 cut(s)	226, 844
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 123, 255, 418, 439
BstNI	CCWGG	3 cut(s)	246, 799, 957
BstNSI	RCATGY	1 cut(s)	442
BstPAI	GACNNNNGTC	1 cut(s)	957
BstSCI	CCNGG	3 cut(s)	244, 797, 955
BstSFI	CTRYAG	1 cut(s)	266
BstSLI	GKGCMC	1 cut(s)	530
BstV1I	GCAGC	3 cut(s)	490, 493, 931
BstX2I	RGATCY	1 cut(s)	844
BstYI	RGATCY	1 cut(s)	844
BsuI	GTATCC	1 cut(s)	458
BsuRI	GGCC	2 cut(s)	657, 832
BtgI	CCRYGG	1 cut(s)	522
BtsCI	GGATG	1 cut(s)	833
BtsIMutI	CAGTG	2 cut(s)	651, 693
Cac8I	GCNNGC	1 cut(s)	792
CfoI	GCGC	1 cut(s)	712
Cfr13I	GGNCC	1 cut(s)	79
CseI	GACGC	1 cut(s)	908
Csp6I	GTAC	2 cut(s)	263, 346
CviAII	CATG	4 cut(s)	439, 475, 523, 931
CviQI	GTAC	2 cut(s)	263, 346
DpnI	GATC	2 cut(s)	228, 846
DpnII	GATC	2 cut(s)	226, 844
EaeI	YGGCCR	2 cut(s)	655, 830
Eam1104I	CTCTTC	1 cut(s)	933
EarI	CTCTTC	1 cut(s)	933
Eco130I	CCWWGG	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	79
Eco72I	CACGTG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	359
EcoNI	CCTNNNNNAGG	2 cut(s)	567, 960
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRII	CCWGG	3 cut(s)	244, 797, 955
EcoT14I	CCWWGG	1 cut(s)	522
EcoT22I	ATGCAT	2 cut(s)	423, 435
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	4 cut(s)	442, 478, 526, 934
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	4 cut(s)	438, 474, 522, 930
FauNDI	CATATG	1 cut(s)	585
FblI	GTMKAC	1 cut(s)	951
Fnu4HI	GCNGC	3 cut(s)	479, 482, 920
FokI	GGATG	1 cut(s)	840
Fsp4HI	GCNGC	3 cut(s)	479, 482, 920
FspBI	CTAG	2 cut(s)	234, 692
GlaI	GCGC	1 cut(s)	711
GluI	GCNGC	3 cut(s)	479, 482, 920
GsuI	CTGGAG	1 cut(s)	381
HaeII	RGCGCY	1 cut(s)	713
HaeIII	GGCC	2 cut(s)	657, 832
HgaI	GACGC	1 cut(s)	908
HhaI	GCGC	1 cut(s)	712
Hin1II	CATG	4 cut(s)	442, 478, 526, 934
Hin6I	GCGC	1 cut(s)	710
HinP1I	GCGC	1 cut(s)	710
HincII	GTYRAC	2 cut(s)	448, 952
HindII	GTYRAC	2 cut(s)	448, 952
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	5 cut(s)	92, 558, 716, 893, 911
HpaI	GTTAAC	1 cut(s)	448
HphI	GGTGA	2 cut(s)	500, 867
Hpy166II	GTNNAC	3 cut(s)	448, 875, 952
Hpy188I	TCNGA	3 cut(s)	892, 898, 976
Hpy188III	TCNNGA	4 cut(s)	160, 398, 605, 616
Hpy8I	GTNNAC	3 cut(s)	448, 875, 952
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	2 cut(s)	738, 897
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	8 cut(s)	13, 268, 290, 421, 433, 478, 698, 722
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 123, 255, 418, 439
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	4 cut(s)	442, 478, 526, 934
HspAI	GCGC	1 cut(s)	710
KspAI	GTTAAC	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	226, 844
LmnI	GCTCC	2 cut(s)	764, 851
Lsp1109I	GCAGC	3 cut(s)	490, 493, 931
MaeI	CTAG	2 cut(s)	234, 692
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	228, 846
MboI	GATC	2 cut(s)	226, 844
MboII	GAAGA	3 cut(s)	16, 155, 950
MflI	RGATCY	1 cut(s)	844
MhlI	GDGCHC	3 cut(s)	128, 530, 856
MlsI	TGGCCA	2 cut(s)	657, 832
MluCI	AATT	9 cut(s)	41, 163, 272, 293, 451, 517, 574, 742, 802
MluNI	TGGCCA	2 cut(s)	657, 832
MlyI	GAGTC	3 cut(s)	86, 710, 887
MmeI	TCCRAC	1 cut(s)	915
MnlI	CCTC	6 cut(s)	70, 309, 405, 423, 495, 744
Mox20I	TGGCCA	2 cut(s)	657, 832
Mph1103I	ATGCAT	2 cut(s)	423, 435
MroXI	GAANNNNTTC	1 cut(s)	865
MscI	TGGCCA	2 cut(s)	657, 832
MseI	TTAA	1 cut(s)	447
Msp20I	TGGCCA	2 cut(s)	657, 832
MspA1I	CMGCKG	1 cut(s)	376
MspR9I	CCNGG	3 cut(s)	246, 799, 957
Mva1269I	GAATGC	1 cut(s)	435
MvaI	CCWGG	3 cut(s)	246, 799, 957
MwoI	GCNNNNNNNGC	5 cut(s)	46, 123, 255, 418, 439
NcoI	CCATGG	1 cut(s)	522
NdeI	CATATG	1 cut(s)	585
NdeII	GATC	2 cut(s)	226, 844
NlaIII	CATG	4 cut(s)	442, 478, 526, 934
NlaIV	GGNNCC	3 cut(s)	81, 529, 795
NmuCI	GTSAC	1 cut(s)	133
NsiI	ATGCAT	2 cut(s)	423, 435
NspI	RCATGY	1 cut(s)	442
PaeR7I	CTCGAG	1 cut(s)	359
PctI	GAATGC	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	865
PfeI	GAWTC	2 cut(s)	558, 911
PflMI	CCANNNNNTGG	1 cut(s)	848
PkrI	GCNGC	3 cut(s)	480, 483, 921
PleI	GAGTC	3 cut(s)	86, 710, 887
PmaCI	CACGTG	1 cut(s)	140
PmlI	CACGTG	1 cut(s)	140
PpsI	GAGTC	3 cut(s)	86, 710, 887
Ppu21I	YACGTR	1 cut(s)	140
PpuMI	RGGWCCY	1 cut(s)	79
PshAI	GACNNNNGTC	1 cut(s)	957
Psp5II	RGGWCCY	1 cut(s)	79
Psp6I	CCWGG	3 cut(s)	244, 797, 955
PspCI	CACGTG	1 cut(s)	140
PspGI	CCWGG	3 cut(s)	244, 797, 955
PspN4I	GGNNCC	3 cut(s)	81, 529, 795
PspPI	GGNCC	1 cut(s)	79
PspPPI	RGGWCCY	1 cut(s)	79
PspXI	VCTCGAGB	1 cut(s)	359
PstI	CTGCAG	1 cut(s)	270
PsuI	RGATCY	1 cut(s)	844
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	2 cut(s)	264, 347
RsaNI	GTAC	2 cut(s)	263, 346
SalI	GTCGAC	1 cut(s)	950
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	3 cut(s)	479, 482, 920
Sau3AI	GATC	2 cut(s)	226, 844
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	3 cut(s)	86, 710, 887
ScrFI	CCNGG	3 cut(s)	246, 799, 957
SduI	GDGCHC	3 cut(s)	128, 530, 856
SetI	ASST	9 cut(s)	81, 142, 179, 260, 327, 378, 460, 697, 755
SfcI	CTRYAG	1 cut(s)	266
Sfr274I	CTCGAG	1 cut(s)	359
SinI	GGWCC	1 cut(s)	79
SlaI	CTCGAG	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	359, 567
SmoI	CTYRAG	2 cut(s)	359, 567
Sse9I	AATT	9 cut(s)	41, 163, 272, 293, 451, 517, 574, 742, 802
SsiI	CCGC	2 cut(s)	47, 917
SspMI	CTAG	2 cut(s)	234, 692
StyD4I	CCNGG	3 cut(s)	244, 797, 955
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	4 cut(s)	213, 360, 536, 951
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	9 cut(s)	41, 163, 272, 293, 451, 517, 574, 742, 802
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	2 cut(s)	558, 911
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	651, 693
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	3 cut(s)	478, 481, 919
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	4 cut(s)	17, 209, 219, 395
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	2 cut(s)	651, 693
Van91I	CCANNNNNTGG	1 cut(s)	848
VpaK11BI	GGWCC	1 cut(s)	79
XagI	CCTNNNNNAGG	2 cut(s)	567, 960
XapI	RAATTY	5 cut(s)	163, 293, 574, 742, 802
XceI	RCATGY	1 cut(s)	442
XhoI	CTCGAG	1 cut(s)	359
XmiI	GTMKAC	1 cut(s)	951
XmnI	GAANNNNTTC	1 cut(s)	865
XspI	CTAG	2 cut(s)	234, 692
Zsp2I	ATGCAT	2 cut(s)	423, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.