pycom01g10780

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0001091
Physical Location & Seq
Forward (+)
11581254 .. 11584160
2907 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g10780.8

Sequence Viewer

Length: 1116 bp
ATGAAGAACTCACAGAGCACGCAAGAAAATCAATCATCAACTCAAGTTTTACATGATTCACAAGGTGACCAAGTGAAAAACCAAAGTAATGAGCCTCCTGCAACAGATTCAGCTTCAGTATCTAATTCAGGCAATGATAACAAGAAAGTATCACGCCAAGATATTGAACTTGTCCAGAATCTTATAGAGCGGTGTTTACAATTATATATGAATAGAGATGAGGTAGTTAAAACCCTCTTGACTCGTGCAAGGATAGATCCTGGATTCACAACTTTGGTATGGCAGAAGTTGGAAGAAGAAAATGCCGACTTTTTCAGGGCCTATTACATAAGGCTGAAATTGAAAAAACAAATCCTCCTTTTCAATCATTTGCTGGAACATCACTATCATCTCTCGAAGTATAATCCCATGCCTCTGAAGGTTCCTTTGGCCCCTATACAAAATGGGATCCATCCTATGCCTGTTAACAACTTACCTATGGGATACCCTGTCCTTCAGCAACCTCCGATGCCAGCAGCAGGTCAACCCCATCTCGATTCCATGGGATGTGCAATATCCAACTGTCATGTAGTTAATGGGGTACCTGCACCTAGCAACTTTCATCCCATGCGGATGAATTCTGGGAATGATATTATGATGGACTGCAGTGGTGCTGATGTGGTTCCTGTCATTCCACCAAACAGTGCCATGTCATCCATGTCGGAGATGCCTGTAAGTCCTACATCAGTTGCATCGAGTGGTCACTTCCCGTTCTCTGCTTCAGAAATATCTGGAATGGGAGTAGACACAGCACTTGATACTCCATTTACATCTGATGTGGCAAGTTCTGTTGGATTGCAACTTGCACCTGATGGTGGAGCTGGAAATTCTCGGGATTCTCTCAGATCACTGGACCAAATTCCAATTCCGTGGAATCTCAGTTTATCAGATCTTACAGCAGATTTATCAAACTTGGGAGATTTAGGAGCCTTAGGAAACTACCCCGGTTCACCCTTTCTGCCGTCTGATTCTGAAATTTTACTCGATTCTCCAGAGCAAGAGGATATAGTGGAGGAGTTCTTTGTTGATTCTGTACCCGGACCGCCATGCTCTCAGTCAGATGAGGAGAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

372

Amino Acids

40.3

Weight (kDa)

4.64

Isoelectric Point (pI)

61.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 509, 592
Acc65I GGTACC 1 cut(s) 580
AccB1I GGYRCC 1 cut(s) 580
AccBSI CCGCTC 1 cut(s) 190
AccI GTMKAC 1 cut(s) 783
AciI CCGC 3 cut(s) 190, 610, 1082
AclWI GGATC 3 cut(s) 251, 442, 455
AcsI RAATTY 4 cut(s) 616, 865, 897, 1014
AcuI CTGAAG 4 cut(s) 99, 437, 479, 744
AdeI CACNNNGTG 1 cut(s) 65
AfaI GTAC 2 cut(s) 582, 1074
AfiI CCNNNNNNNGG 2 cut(s) 518, 854
AgsI TTSAA 3 cut(s) 167, 343, 364
AjnI CCWGG 1 cut(s) 259
AjuI GAANNNNNNNTTGG 4 cut(s) 410, 442, 888, 920
AluBI AGCT 2 cut(s) 113, 860
AluI AGCT 2 cut(s) 113, 860
Alw21I GWGCWC 1 cut(s) 20
AlwI GGATC 3 cut(s) 251, 442, 455
Ama87I CYCGRG 1 cut(s) 870
AoxI GGCC 2 cut(s) 318, 429
ApeKI GCWGC 1 cut(s) 515
ApoI RAATTY 4 cut(s) 616, 865, 897, 1014
Asp718I GGTACC 1 cut(s) 580
AspS9I GGNCC 4 cut(s) 318, 430, 892, 1079
AsuC2I CCSGG 2 cut(s) 984, 1077
AsuHPI GGTGA 2 cut(s) 77, 981
AvaI CYCGRG 1 cut(s) 870
AvaII GGWCC 2 cut(s) 892, 1079
AxyI CCTNAGG 1 cut(s) 970
BamHI GGATCC 1 cut(s) 447
BanI GGYRCC 1 cut(s) 580
BauI CACGAG 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 527
BccI CCATC 4 cut(s) 459, 537, 631, 845
BceAI ACGGC 1 cut(s) 985
BciT130I CCWGG 1 cut(s) 261
BciVI GTATCC 1 cut(s) 476
BcnI CCSGG 2 cut(s) 984, 1077
BfaI CTAG 2 cut(s) 591, 1114
BfmI CTRYAG 1 cut(s) 643
BfuAI ACCTGC 2 cut(s) 509, 592
BfuI GTATCC 1 cut(s) 476
BglII AGATCT 1 cut(s) 928
BisI GCNGC 1 cut(s) 516
BlsI GCNGC 1 cut(s) 517
Bme1390I CCNGG 3 cut(s) 261, 984, 1077
Bme18I GGWCC 2 cut(s) 892, 1079
BmeT110I CYCGRG 1 cut(s) 870
BmgT120I GGNCC 4 cut(s) 318, 430, 892, 1079
BmiI GGNNCC 6 cut(s) 423, 432, 449, 582, 663, 967
BmrFI CCNGG 3 cut(s) 261, 984, 1077
BmsI GCATC 3 cut(s) 498, 696, 740
BpmI CTGGAG 1 cut(s) 1014
BpuEI CTTGAG 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 984, 1077
BsaJI CCNNGG 3 cut(s) 540, 908, 982
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 518, 854
Bse1I ACTGG 1 cut(s) 894
Bse21I CCTNAGG 1 cut(s) 970
Bse3DI GCAATG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 3 cut(s) 540, 908, 982
BseGI GGATG 5 cut(s) 451, 551, 601, 618, 692
BseLI CCNNNNNNNGG 2 cut(s) 518, 854
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 3 cut(s) 895, 931, 1106
BseNI ACTGG 1 cut(s) 894
BseRI GAGGAG 1 cut(s) 1067
BseXI GCAGC 1 cut(s) 527
BsgI GTGCAG 1 cut(s) 570
BshFI GGCC 2 cut(s) 320, 431
BshNI GGYRCC 1 cut(s) 580
BsiHKAI GWGCWC 1 cut(s) 20
BsiHKCI CYCGRG 1 cut(s) 870
BsiSI CCGG 2 cut(s) 984, 1077
BslI CCNNNNNNNGG 2 cut(s) 518, 854
BsnI GGCC 2 cut(s) 320, 431
BsoBI CYCGRG 1 cut(s) 870
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 4 cut(s) 256, 447, 884, 928
Bsp19I CCATGG 1 cut(s) 540
BspACI CCGC 3 cut(s) 190, 610, 1082
BspANI GGCC 2 cut(s) 320, 431
BspCNI CTCAG 3 cut(s) 894, 930, 1105
BspLI GGNNCC 6 cut(s) 423, 432, 449, 582, 663, 967
BspMAI CTGCAG 1 cut(s) 647
BspMI ACCTGC 2 cut(s) 509, 592
BspPI GGATC 3 cut(s) 251, 442, 455
BspT107I GGYRCC 1 cut(s) 580
BsrBI CCGCTC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 139
BsrI ACTGG 1 cut(s) 894
BssECI CCNNGG 3 cut(s) 540, 908, 982
BssMI GATC 4 cut(s) 256, 447, 884, 928
BssSI CACGAG 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 540
Bst2BI CACGAG 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 563, 683
BstC8I GCNNGC 2 cut(s) 20, 513
BstDEI CTNAG 4 cut(s) 881, 917, 970, 1092
BstDSI CCRYGG 2 cut(s) 540, 908
BstEII GGTNACC 1 cut(s) 65
BstF5I GGATG 5 cut(s) 451, 551, 601, 618, 692
BstKTI GATC 4 cut(s) 259, 450, 887, 931
BstMBI GATC 4 cut(s) 256, 447, 884, 928
BstNI CCWGG 1 cut(s) 261
BstPI GGTNACC 1 cut(s) 65
BstSCI CCNGG 3 cut(s) 259, 982, 1075
BstSFI CTRYAG 1 cut(s) 643
BstV1I GCAGC 1 cut(s) 527
BstX2I RGATCY 3 cut(s) 256, 447, 928
BstXI CCANNNNNNTGG 1 cut(s) 909
BstYI RGATCY 3 cut(s) 256, 447, 928
Bsu36I CCTNAGG 1 cut(s) 970
BsuI GTATCC 1 cut(s) 476
BsuRI GGCC 2 cut(s) 320, 431
BtgI CCRYGG 2 cut(s) 540, 908
BtsCI GGATG 5 cut(s) 451, 551, 601, 618, 692
BtsI GCAGTG 1 cut(s) 652
BtsIMutI CAGTG 3 cut(s) 652, 688, 887
BveI ACCTGC 2 cut(s) 509, 592
Cac8I GCNNGC 2 cut(s) 20, 513
Cfr13I GGNCC 4 cut(s) 318, 430, 892, 1079
CpoI CGGWCCG 1 cut(s) 1079
Csp6I GTAC 2 cut(s) 581, 1073
CspI CGGWCCG 1 cut(s) 1079
CviAII CATG 8 cut(s) 53, 409, 541, 566, 607, 688, 697, 1086
CviJI RGCY 7 cut(s) 94, 113, 320, 334, 431, 860, 968
CviKI_1 RGCY 7 cut(s) 94, 113, 320, 334, 431, 860, 968
CviQI GTAC 2 cut(s) 581, 1073
DdeI CTNAG 4 cut(s) 881, 917, 970, 1092
DpnI GATC 4 cut(s) 258, 449, 886, 930
DpnII GATC 4 cut(s) 256, 447, 884, 928
DraIII CACNNNGTG 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 540
Eco47I GGWCC 2 cut(s) 892, 1079
Eco57I CTGAAG 4 cut(s) 99, 437, 479, 744
Eco81I CCTNAGG 1 cut(s) 970
Eco88I CYCGRG 1 cut(s) 870
Eco91I GGTNACC 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 318
EcoO65I GGTNACC 1 cut(s) 65
EcoRI GAATTC 1 cut(s) 616
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 540
ErhI CCWWGG 1 cut(s) 540
FaeI CATG 8 cut(s) 56, 412, 544, 569, 610, 691, 700, 1089
FatI CATG 8 cut(s) 52, 408, 540, 565, 606, 687, 696, 1085
FblI GTMKAC 1 cut(s) 783
Fnu4HI GCNGC 1 cut(s) 516
FokI GGATG 5 cut(s) 438, 558, 588, 625, 679
Fsp4HI GCNGC 1 cut(s) 516
FspBI CTAG 2 cut(s) 591, 1114
GluI GCNGC 1 cut(s) 516
GsuI CTGGAG 1 cut(s) 1014
HaeIII GGCC 2 cut(s) 320, 431
HapII CCGG 2 cut(s) 984, 1077
Hin1II CATG 8 cut(s) 56, 412, 544, 569, 610, 691, 700, 1089
HincII GTYRAC 2 cut(s) 466, 524
HindII GTYRAC 2 cut(s) 466, 524
HpaI GTTAAC 1 cut(s) 466
HpaII CCGG 2 cut(s) 984, 1077
HphI GGTGA 2 cut(s) 77, 981
Hpy166II GTNNAC 5 cut(s) 197, 466, 524, 784, 989
Hpy188III TCNNGA 7 cut(s) 175, 238, 394, 533, 771, 872, 1031
Hpy8I GTNNAC 5 cut(s) 197, 466, 524, 784, 989
HpyAV CCTTC 2 cut(s) 412, 503
HpyCH4III ACNGT 2 cut(s) 563, 683
HpyCH4V TGCA 8 cut(s) 101, 248, 551, 587, 645, 731, 838, 845
HpyF3I CTNAG 4 cut(s) 881, 917, 970, 1092
Hsp92II CATG 8 cut(s) 56, 412, 544, 569, 610, 691, 700, 1089
KpnI GGTACC 1 cut(s) 584
KspAI GTTAAC 1 cut(s) 466
Kzo9I GATC 4 cut(s) 256, 447, 884, 928
LmnI GCTCC 2 cut(s) 857, 965
Lsp1109I GCAGC 1 cut(s) 527
LweI GCATC 3 cut(s) 498, 696, 740
MaeI CTAG 2 cut(s) 591, 1114
MaeIII GTNAC 2 cut(s) 65, 740
MalI GATC 4 cut(s) 258, 449, 886, 930
MbiI CCGCTC 1 cut(s) 190
MboI GATC 4 cut(s) 256, 447, 884, 928
MboII GAAGA 3 cut(s) 16, 305, 308
MflI RGATCY 3 cut(s) 256, 447, 928
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 8 cut(s) 124, 200, 338, 616, 865, 897, 903, 1014
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 4 cut(s) 270, 582, 681, 811
MnlI CCTC 9 cut(s) 105, 214, 245, 365, 423, 513, 1033, 1045, 1096
MseI TTAA 3 cut(s) 228, 465, 573
MslI CAYNNNNRTG 1 cut(s) 611
MspI CCGG 2 cut(s) 984, 1077
MspR9I CCNGG 3 cut(s) 261, 984, 1077
MvaI CCWGG 1 cut(s) 261
NciI CCSGG 2 cut(s) 984, 1077
NcoI CCATGG 1 cut(s) 540
NdeII GATC 4 cut(s) 256, 447, 884, 928
NlaIII CATG 8 cut(s) 56, 412, 544, 569, 610, 691, 700, 1089
NlaIV GGNNCC 6 cut(s) 423, 432, 449, 582, 663, 967
NmuCI GTSAC 2 cut(s) 65, 740
PfoI TCCNGGA 1 cut(s) 259
PkrI GCNGC 1 cut(s) 517
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 259
PspEI GGTNACC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 6 cut(s) 423, 432, 449, 582, 663, 967
PspPI GGNCC 4 cut(s) 318, 430, 892, 1079
PstI CTGCAG 1 cut(s) 647
PsuI RGATCY 3 cut(s) 256, 447, 928
RsaI GTAC 2 cut(s) 582, 1074
RsaNI GTAC 2 cut(s) 581, 1073
RseI CAYNNNNRTG 1 cut(s) 611
Rsr2I CGGWCCG 1 cut(s) 1079
RsrII CGGWCCG 1 cut(s) 1079
SaqAI TTAA 3 cut(s) 228, 465, 573
SatI GCNGC 1 cut(s) 516
Sau3AI GATC 4 cut(s) 256, 447, 884, 928
Sau96I GGNCC 4 cut(s) 318, 430, 892, 1079
SchI GAGTC 1 cut(s) 235
ScrFI CCNGG 3 cut(s) 261, 984, 1077
SduI GDGCHC 1 cut(s) 20
SfaNI GCATC 3 cut(s) 498, 696, 740
SfcI CTRYAG 1 cut(s) 643
SinI GGWCC 2 cut(s) 892, 1079
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 8 cut(s) 124, 200, 338, 616, 865, 897, 903, 1014
SsiI CCGC 3 cut(s) 190, 610, 1082
SspMI CTAG 2 cut(s) 591, 1114
StyD4I CCNGG 3 cut(s) 259, 982, 1075
StyI CCWWGG 1 cut(s) 540
TaaI ACNGT 2 cut(s) 563, 683
TaqI TCGA 4 cut(s) 395, 534, 734, 1023
TasI AATT 8 cut(s) 124, 200, 338, 616, 865, 897, 903, 1014
Tru1I TTAA 3 cut(s) 228, 465, 573
Tru9I TTAA 3 cut(s) 228, 465, 573
TscAI CASTG 3 cut(s) 652, 688, 894
TseFI GTSAC 2 cut(s) 65, 740
TseI GCWGC 1 cut(s) 515
Tsp45I GTSAC 2 cut(s) 65, 740
TspDTI ATGAA 4 cut(s) 17, 224, 590, 629
TspGWI ACGGA 1 cut(s) 897
TspRI CASTG 3 cut(s) 652, 688, 894
VpaK11BI GGWCC 2 cut(s) 892, 1079
XapI RAATTY 4 cut(s) 616, 865, 897, 1014
XmiI GTMKAC 1 cut(s) 783
XspI CTAG 2 cut(s) 591, 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.