Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001091

Physical Location & Seq

Genomic Coordinates Forward (+)

30940921 .. 30944376

Gene Structure 3456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1216500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAAGATATTGCAGGATAAACAGAAGTCAATGGAGAAGCAATTTCCCCATAATGACCAACAAAATGGCGTCAGCGAGGTTCCTACGGTGGACTCTGGTTCAGTATCTATTTCCAGCAACAAGAGTACAAAAGTCACGCGTGAAGATATTGAAGTTGTCCAGAATTTGGTTGAAAGATGTCTGCGGTTGTATATGAACAAAAATGAAGTCATCAATACCCTGTTAGATCGTGCTAGGATTGAGCCGGGCTTTACAAGCTTGGTACTTGAGAAATTGGAAGTAGAAAATGCAGAATTTTTCAAGGCTTACTACACGAGGCTAAAGCTGAAAAATCAAATTGTTATGTACAACCGTTTGCTTGAGCAACAATACCATCTGATGAAACAGCAAGAGCCTCCAGAGGTTCCATTGCCTCCCTTGCATAATGGGATGCATTACATGCCAGTTAACAATTTACCTATGGGATACCCCGTCATGCAGCAACCTCCATTTCCGTCTAAGGGTCATCACCCAATCAATTCCATGGGCACTATATCGAGTTGTCATTTGGTCAATGGAATCCCTGCTCATGGAAATTTCCACCATATGCCCCTAAACTTATGTCAAGACGGTATCAAGACAGAGATGGTTTCGAGTCCTGTATCAGTGTCCAATGGCCAGTTTCCTTACACTACATCAGAAATATCAGGGCTAGGCGCAGACACATCGATGCTTGATCCTGCATTTACTCACTTTGCAAATTTGGAGAGGTTCGGTAATGGAACAGATGGTGGAAAGTTATCGGGACAGGCTCCTTGGAATTTCGGCCTCGTTGATACTGCTGGATGGCCAAACTTACCAGATCTTGGATCACTTGGAAACTATTCGGGTTCACCCTTTCTGCCTTCCGACTCGGACATAATGCTTGATTCTCCAGAGCAAAATGACATGGTGGAAGAGTTCTTTGTCGACCCTGGTGAAGGCTCTCAATCGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

326

Amino Acids

36.17

Weight (kDa)

5.13

Isoelectric Point (pI)

53.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_thal_3526	PF09713	53 - 105	3e-22	Plant protein 1589 of unknown function (A_thal_3526)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46420 AT2G46420 AT2G46420 AT3G61700 AT3G61700 AT3G61700 AT3G61700
fragaria_vesca	FvH4_7g16290 FvH4_7g16290 FvH4_7g16290 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180 FvH4_7g31180
malus_domestica	MD01G1079500.v1.1 MD01G1216500.v1.1 MD07G1148300.v1.1 MD07G1286500.v1.1 MD12G1148300.v1.1
prunus_persica	Prupe.2G186600_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1 Prupe.2G308500_v2.0.a1
pyrus_communis	pycom01g10780 pycom01g22720 pycom07g14730 pycom07g25960
rosa_chinensis	RchiOBHm_Chr1g0359301 RchiOBHm_Chr1g0380221
rosa_laevigata	RLG00000026317 RLG00000027882
rosa_multiflora	Rmu_co8458617.1_g000001 Rmu_sc0001232.1_g000028 Rmu_sc0002689.1_g000001 Rmu_ssc0000135.1_g000052
rosa_roxburghii	Rroxscaffold_4G00279550 Rroxscaffold_4G00297130
rosa_rugosa	Rorug01G0269300 Rorug01G0269400 Rorug01G0419200
rosa_samantha	Rh1AG283300 Rh1AG444000 Rh1BG249500 Rh1BG399100 Rh1CG267400 Rh1CG412500 Rh1DG278400 Rh1DG429600
rosa_wichuraiana	Rw1G025150 Rw1G038560 Rw1G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	166, 845
AccI	GTMKAC	1 cut(s)	948
AccII	CGCG	1 cut(s)	139
AciI	CCGC	1 cut(s)	184
AclWI	GGATC	2 cut(s)	710, 856
AcoI	YGGCCR	2 cut(s)	655, 827
AcsI	RAATTY	5 cut(s)	163, 293, 574, 739, 799
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	3 cut(s)	127, 264, 347
AfiI	CCNNNNNNNGG	5 cut(s)	166, 500, 569, 845, 959
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	152, 173, 301
AjnI	CCWGG	1 cut(s)	952
AluBI	AGCT	2 cut(s)	258, 325
AluI	AGCT	2 cut(s)	258, 325
AlwI	GGATC	2 cut(s)	710, 856
AoxI	GGCC	3 cut(s)	655, 805, 827
ApeKI	GCWGC	1 cut(s)	478
ApoI	RAATTY	5 cut(s)	163, 293, 574, 739, 799
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
Asp700I	GAANNNNTTC	1 cut(s)	862
AspLEI	GCGC	1 cut(s)	698
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	3 cut(s)	500, 864, 968
BaeGI	GKGCMC	1 cut(s)	530
BalI	TGGCCA	2 cut(s)	657, 829
BauI	CACGAG	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	4 cut(s)	381, 619, 761, 819
BcgI	CGANNNNNNTGC	2 cut(s)	687, 721
BciT130I	CCWGG	1 cut(s)	954
BciVI	GTATCC	1 cut(s)	458
BcnI	CCSGG	1 cut(s)	246
BfaI	CTAG	2 cut(s)	234, 692
BfuI	GTATCC	1 cut(s)	458
BglII	AGATCT	1 cut(s)	841
BisI	GCNGC	1 cut(s)	479
BlsI	GCNGC	1 cut(s)	480
Bme1390I	CCNGG	2 cut(s)	246, 954
BmiI	GGNNCC	3 cut(s)	81, 405, 792
BmrFI	CCNGG	2 cut(s)	246, 954
BmsI	GCATC	2 cut(s)	420, 699
BpmI	CTGGAG	2 cut(s)	381, 897
BpuEI	CTTGAG	2 cut(s)	287, 380
BpuMI	CCSGG	1 cut(s)	246
Bsa29I	ATCGAT	1 cut(s)	707
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	522, 794, 952
Bsc4I	CCNNNNNNNGG	5 cut(s)	166, 500, 569, 845, 959
Bse1I	ACTGG	2 cut(s)	443, 658
Bse3DI	GCAATG	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	954
BseCI	ATCGAT	1 cut(s)	707
BseDI	CCNNGG	3 cut(s)	522, 794, 952
BseGI	GGATG	2 cut(s)	435, 830
BseLI	CCNNNNNNNGG	5 cut(s)	166, 500, 569, 845, 959
BseMI	GCAATG	1 cut(s)	407
BseNI	ACTGG	2 cut(s)	443, 658
BseSI	GKGCMC	1 cut(s)	530
BseXI	GCAGC	1 cut(s)	490
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	3 cut(s)	657, 807, 829
BshVI	ATCGAT	1 cut(s)	707
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	798
BslI	CCNNNNNNNGG	5 cut(s)	166, 500, 569, 845, 959
BsmFI	GGGAC	1 cut(s)	798
BsnI	GGCC	3 cut(s)	657, 807, 829
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	4 cut(s)	226, 715, 841, 848
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	1 cut(s)	184
BspANI	GGCC	3 cut(s)	657, 807, 829
BspDI	ATCGAT	1 cut(s)	707
BspFNI	CGCG	1 cut(s)	139
BspLI	GGNNCC	3 cut(s)	81, 405, 792
BspPI	GGATC	2 cut(s)	710, 856
BsrDI	GCAATG	1 cut(s)	407
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	443, 658
BssECI	CCNNGG	3 cut(s)	522, 794, 952
BssMI	GATC	4 cut(s)	226, 715, 841, 848
BssNI	GRCGYC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	313
BssT1I	CCWWGG	2 cut(s)	522, 794
Bst2BI	CACGAG	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	954
Bst4CI	ACNGT	3 cut(s)	88, 353, 611
Bst6I	CTCTTC	1 cut(s)	930
BstACI	GRCGYC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	439
BstAUI	TGTACA	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	498
BstDSI	CCRYGG	1 cut(s)	522
BstENI	CCTNNNNNAGG	1 cut(s)	957
BstF5I	GGATG	2 cut(s)	435, 830
BstFNI	CGCG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	698
BstKTI	GATC	4 cut(s)	229, 718, 844, 851
BstMBI	GATC	4 cut(s)	226, 715, 841, 848
BstMWI	GCNNNNNNNGC	3 cut(s)	255, 418, 439
BstNI	CCWGG	1 cut(s)	954
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	2 cut(s)	244, 952
BstSLI	GKGCMC	1 cut(s)	530
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	490
BstX2I	RGATCY	1 cut(s)	841
BstXI	CCANNNNNNTGG	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	841
Bsu15I	ATCGAT	1 cut(s)	707
BsuI	GTATCC	1 cut(s)	458
BsuRI	GGCC	3 cut(s)	657, 807, 829
BsuTUI	ATCGAT	1 cut(s)	707
BtgI	CCRYGG	1 cut(s)	522
BtsCI	GGATG	2 cut(s)	435, 830
BtsIMutI	CAGTG	1 cut(s)	651
CfoI	GCGC	1 cut(s)	698
ClaI	ATCGAT	1 cut(s)	707
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	3 cut(s)	126, 263, 346
CviAII	CATG	5 cut(s)	439, 475, 523, 569, 928
CviQI	GTAC	3 cut(s)	126, 263, 346
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	4 cut(s)	228, 717, 843, 850
DpnII	GATC	4 cut(s)	226, 715, 841, 848
EaeI	YGGCCR	2 cut(s)	655, 827
Eam1104I	CTCTTC	1 cut(s)	930
EarI	CTCTTC	1 cut(s)	930
Eco130I	CCWWGG	2 cut(s)	522, 794
EcoNI	CCTNNNNNAGG	1 cut(s)	957
EcoRII	CCWGG	1 cut(s)	952
EcoT14I	CCWWGG	2 cut(s)	522, 794
EcoT22I	ATGCAT	1 cut(s)	435
ErhI	CCWWGG	2 cut(s)	522, 794
FaeI	CATG	5 cut(s)	442, 478, 526, 572, 931
FaqI	GGGAC	1 cut(s)	798
FatI	CATG	5 cut(s)	438, 474, 522, 568, 927
FauNDI	CATATG	1 cut(s)	585
FblI	GTMKAC	1 cut(s)	948
Fnu4HI	GCNGC	1 cut(s)	479
FokI	GGATG	2 cut(s)	442, 837
Fsp4HI	GCNGC	1 cut(s)	479
FspBI	CTAG	2 cut(s)	234, 692
GlaI	GCGC	1 cut(s)	697
GluI	GCNGC	1 cut(s)	479
GsuI	CTGGAG	2 cut(s)	381, 897
HaeIII	GGCC	3 cut(s)	657, 807, 829
HapII	CCGG	1 cut(s)	245
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	698
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	5 cut(s)	442, 478, 526, 572, 931
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HincII	GTYRAC	2 cut(s)	448, 949
HindII	GTYRAC	2 cut(s)	448, 949
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	5 cut(s)	92, 558, 634, 890, 908
HpaI	GTTAAC	1 cut(s)	448
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	3 cut(s)	500, 864, 968
Hpy166II	GTNNAC	4 cut(s)	91, 448, 872, 949
Hpy188I	TCNGA	5 cut(s)	378, 679, 889, 895, 973
Hpy188III	TCNNGA	6 cut(s)	160, 398, 605, 616, 783, 914
Hpy8I	GTNNAC	4 cut(s)	91, 448, 872, 949
HpyAV	CCTTC	2 cut(s)	894, 953
HpyCH4III	ACNGT	3 cut(s)	88, 353, 611
HpyCH4V	TGCA	7 cut(s)	13, 290, 421, 433, 478, 722, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	255, 418, 439
HpyF3I	CTNAG	1 cut(s)	498
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	5 cut(s)	442, 478, 526, 572, 931
HspAI	GCGC	1 cut(s)	696
KspAI	GTTAAC	1 cut(s)	448
Kzo9I	GATC	4 cut(s)	226, 715, 841, 848
LmnI	GCTCC	1 cut(s)	796
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	2 cut(s)	420, 699
MaeI	CTAG	2 cut(s)	234, 692
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	4 cut(s)	228, 717, 843, 850
MboI	GATC	4 cut(s)	226, 715, 841, 848
MboII	GAAGA	3 cut(s)	16, 155, 947
MflI	RGATCY	1 cut(s)	841
MhlI	GDGCHC	1 cut(s)	530
MlsI	TGGCCA	2 cut(s)	657, 829
MluI	ACGCGT	1 cut(s)	137
MluNI	TGGCCA	2 cut(s)	657, 829
MlyI	GAGTC	3 cut(s)	86, 643, 884
MmeI	TCCRAC	1 cut(s)	912
MnlI	CCTC	8 cut(s)	70, 309, 394, 405, 423, 495, 741, 818
Mox20I	TGGCCA	2 cut(s)	657, 829
Mph1103I	ATGCAT	1 cut(s)	435
MroXI	GAANNNNTTC	1 cut(s)	862
MscI	TGGCCA	2 cut(s)	657, 829
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	707
Msp20I	TGGCCA	2 cut(s)	657, 829
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	2 cut(s)	246, 954
MvaI	CCWGG	1 cut(s)	954
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	3 cut(s)	255, 418, 439
NciI	CCSGG	1 cut(s)	246
NcoI	CCATGG	1 cut(s)	522
NdeI	CATATG	1 cut(s)	585
NdeII	GATC	4 cut(s)	226, 715, 841, 848
NlaIII	CATG	5 cut(s)	442, 478, 526, 572, 931
NlaIV	GGNNCC	3 cut(s)	81, 405, 792
NmuCI	GTSAC	1 cut(s)	133
NsiI	ATGCAT	1 cut(s)	435
NspI	RCATGY	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	862
PfeI	GAWTC	2 cut(s)	558, 908
PflMI	CCANNNNNTGG	2 cut(s)	166, 845
PkrI	GCNGC	1 cut(s)	480
PleI	GAGTC	3 cut(s)	86, 642, 884
PpsI	GAGTC	3 cut(s)	86, 642, 884
Psp6I	CCWGG	1 cut(s)	952
PspGI	CCWGG	1 cut(s)	952
PspN4I	GGNNCC	3 cut(s)	81, 405, 792
PsuI	RGATCY	1 cut(s)	841
RsaI	GTAC	3 cut(s)	127, 264, 347
RsaNI	GTAC	3 cut(s)	126, 263, 346
RseI	CAYNNNNRTG	1 cut(s)	707
SalI	GTCGAC	1 cut(s)	947
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	479
Sau3AI	GATC	4 cut(s)	226, 715, 841, 848
SchI	GAGTC	3 cut(s)	86, 643, 884
ScrFI	CCNGG	2 cut(s)	246, 954
SduI	GDGCHC	1 cut(s)	530
SetI	ASST	7 cut(s)	81, 260, 327, 405, 460, 487, 752
SfaNI	GCATC	2 cut(s)	420, 699
SmiMI	CAYNNNNRTG	1 cut(s)	707
SmlI	CTYRAG	2 cut(s)	266, 359
SmoI	CTYRAG	2 cut(s)	266, 359
SsiI	CCGC	1 cut(s)	184
SspMI	CTAG	2 cut(s)	234, 692
StyD4I	CCNGG	2 cut(s)	244, 952
StyI	CCWWGG	2 cut(s)	522, 794
TaaI	ACNGT	3 cut(s)	88, 353, 611
TaqI	TCGA	4 cut(s)	536, 632, 707, 948
TatI	WGTACW	2 cut(s)	125, 345
TfiI	GAWTC	2 cut(s)	558, 908
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	651
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	478
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	4 cut(s)	17, 209, 219, 395
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	1 cut(s)	651
Van91I	CCANNNNNTGG	2 cut(s)	166, 845
XagI	CCTNNNNNAGG	1 cut(s)	957
XapI	RAATTY	5 cut(s)	163, 293, 574, 739, 799
XceI	RCATGY	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	948
XmnI	GAANNNNTTC	1 cut(s)	862
XspI	CTAG	2 cut(s)	234, 692
Zsp2I	ATGCAT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.