Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Forward (+)

897547 .. 898370

Gene Structure 824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCCACTGCGATGTCTTACTCTTCTCAAAACCATCGATTCGAGCACCAAACCCTAATCCACCGTAACCCTAAGCCTCGTCTTTGCCGCAACTCTTCAACAGCTCCTCGCCGACGCAAGCAAAGCCCTACGGTTGTTAAATCTCCGGCGGCGAATCCAAATCTTGTAATGGAACAAGTCAAGATCCTCAAACGCGGTGAGACATTGAGCGCGTTTAATAAGAACAAGGAAAACATTAGCTCCGACGATACAAGACGACCTGTTTTGAAGATGATAAAAGATGTTGATCTGATTGTATCGGCTACTAATAGAATTGGACCTGAACCAGAGATTTTGATGAAACAGATCGGAGCTTTGGGATTGCAGAGCTTCGCCGGAGCTAATTGCTCTCTTTCGCCGCCTCCAAGCTGTGTTCCAATTCCATGTTTCTTAGGGACGAAGAACAATCTCCTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

152

Amino Acids

16.77

Weight (kDa)

10.16

Isoelectric Point (pI)

70.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	195, 212
AciI	CCGC	4 cut(s)	88, 149, 195, 398
AclWI	GGATC	1 cut(s)	178
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	2 cut(s)	99, 268
AluBI	AGCT	6 cut(s)	104, 240, 353, 369, 380, 408
AluI	AGCT	6 cut(s)	104, 240, 353, 369, 380, 408
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	178
AoxI	GGCC	1 cut(s)	3
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	48
BccI	CCATC	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	194
BisI	GCNGC	3 cut(s)	88, 150, 398
BlsI	GCNGC	3 cut(s)	89, 151, 399
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	72
Bsa29I	ATCGAT	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bse8I	GATNNNNATC	1 cut(s)	285
BseCI	ATCGAT	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	285
BseRI	GAGGAG	1 cut(s)	96
Bsh1236I	CGCG	2 cut(s)	195, 212
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	146, 375
BslFI	GGGAC	1 cut(s)	448
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	183, 286, 345
BspACI	CCGC	4 cut(s)	88, 149, 195, 398
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	37
BspFNI	CGCG	2 cut(s)	195, 212
BspPI	GGATC	1 cut(s)	178
BssMI	GATC	3 cut(s)	183, 286, 345
Bst4CI	ACNGT	2 cut(s)	65, 133
Bst6I	CTCTTC	2 cut(s)	28, 100
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	2 cut(s)	72, 430
BstFNI	CGCG	2 cut(s)	195, 212
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	3 cut(s)	186, 289, 348
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	3 cut(s)	183, 286, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstUI	CGCG	2 cut(s)	195, 212
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
Bsu15I	ATCGAT	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	37
BtgZI	GCGATG	1 cut(s)	26
BtsI	GCAGTG	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	1 cut(s)	119
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	317
ClaI	ATCGAT	1 cut(s)	37
CseI	GACGC	1 cut(s)	123
CviAII	CATG	1 cut(s)	423
DdeI	CTNAG	2 cut(s)	72, 430
DpnI	GATC	3 cut(s)	185, 288, 347
DpnII	GATC	3 cut(s)	183, 286, 345
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	28, 100
EarI	CTCTTC	2 cut(s)	28, 100
Eco47I	GGWCC	1 cut(s)	317
FaeI	CATG	1 cut(s)	426
FaiI	YATR	1 cut(s)	424
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	1 cut(s)	422
Fnu4HI	GCNGC	3 cut(s)	88, 150, 398
Fsp4HI	GCNGC	3 cut(s)	88, 150, 398
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	3 cut(s)	88, 150, 398
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	146, 375
HgaI	GACGC	1 cut(s)	123
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	426
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	2 cut(s)	39, 154
HpaII	CCGG	2 cut(s)	146, 375
HphI	GGTGA	1 cut(s)	209
Hpy188I	TCNGA	3 cut(s)	244, 291, 350
Hpy188III	TCNNGA	1 cut(s)	181
Hpy99I	CGWCG	2 cut(s)	117, 248
HpyCH4III	ACNGT	2 cut(s)	65, 133
HpyCH4V	TGCA	1 cut(s)	364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	2 cut(s)	72, 430
Hsp92II	CATG	1 cut(s)	426
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	3 cut(s)	183, 286, 345
LmnI	GCTCC	4 cut(s)	109, 245, 350, 377
LpnPI	CCDG	5 cut(s)	159, 273, 333, 339, 388
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	3 cut(s)	185, 288, 347
MboI	GATC	3 cut(s)	183, 286, 345
MboII	GAAGA	4 cut(s)	15, 87, 280, 451
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	312, 382, 417
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	4 cut(s)	87, 117, 197, 411
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	138, 216
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	146, 375
MvnI	CGCG	2 cut(s)	195, 212
MwoI	GCNNNNNNNGC	1 cut(s)	123
NdeII	GATC	3 cut(s)	183, 286, 345
NlaIII	CATG	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	39, 154
PkrI	GCNGC	3 cut(s)	89, 151, 399
PspPI	GGNCC	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	183
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	138, 216
SatI	GCNGC	3 cut(s)	88, 150, 398
Sau3AI	GATC	3 cut(s)	183, 286, 345
Sau96I	GGNCC	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	8 cut(s)	106, 242, 262, 322, 355, 371, 382, 410
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	3 cut(s)	312, 382, 417
SsiI	CCGC	4 cut(s)	88, 149, 195, 398
TaaI	ACNGT	2 cut(s)	65, 133
TaqI	TCGA	2 cut(s)	37, 42
TasI	AATT	3 cut(s)	312, 382, 417
TauI	GCSGC	3 cut(s)	90, 152, 400
TfiI	GAWTC	2 cut(s)	39, 154
Tru1I	TTAA	2 cut(s)	138, 216
Tru9I	TTAA	2 cut(s)	138, 216
TscAI	CASTG	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	353
TspRI	CASTG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.