Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Forward (+)

21353285 .. 21354457

Gene Structure 1173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G253300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGGGACGGCGATTCTTCGCTCCCAGGATTGTCTTCGAGGGCGGTTTCGCCACGAAGCCCTAACCCTAACCCCTCGCTCCGGATCACGCCGAAGCCCTAATTTTTCTAACCCGAACCCTAATCCCAGCCCCAACTATGGGTCTAACGCTAATCTTCATCAATCTCGCCGCCGGAAGAGAAGTCCGATGGGATTCCAATCCAATCAACATGATCGCGCCCGAGATCGGTACTCTGATCGCGCCATGGTTGCGAAGGTCCCGGCCAAAAACCTGGTGATGGGCCAGGTCAAGATCCTGAGGCGCGGGGAGGCCTTGAGCCCGGAGAAGAACAACCGAGGACTCGGAGTTGTTTCCGGCGATGCTGGCAAGCCGAGGGCAAAGAGCGAAGATGTTCCAGATTTGGTACTGGGATCGACGGACCGTTTGGGCCCCGACCCGGAGACCGTGCAGAAGCAGATTAAGGTTGCAGAATTCAAGGTCATGGATGCGATTTACGCTGGATCGAGCGCCTTCTACGCGTCTCCACCCCCGAGCTCAGTGCCTTTGCCTGCTTTTTTGGGAAGAAACGGCACGGCGACGAGCGATCTGCGTCGGCTGCTGCGACTCGATTCGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

206

Amino Acids

22.45

Weight (kDa)

10.87

Isoelectric Point (pI)

69.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	216, 240, 303, 518
AccIII	TCCGGA	1 cut(s)	80
AciI	CCGC	3 cut(s)	43, 169, 303
AclWI	GGATC	4 cut(s)	91, 286, 418, 508
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	470
AfaI	GTAC	2 cut(s)	230, 405
AfiI	CCNNNNNNNGG	6 cut(s)	80, 137, 138, 225, 277, 436
AflIII	ACRYGT	1 cut(s)	516
AgsI	TTSAA	1 cut(s)	475
AjnI	CCWGG	3 cut(s)	24, 270, 282
AluBI	AGCT	1 cut(s)	534
AluI	AGCT	1 cut(s)	534
Alw21I	GWGCWC	1 cut(s)	536
Alw26I	GTCTC	2 cut(s)	434, 525
AlwI	GGATC	4 cut(s)	91, 286, 418, 508
Ama87I	CYCGRG	2 cut(s)	219, 529
Aor13HI	TCCGGA	1 cut(s)	80
AoxI	GGCC	4 cut(s)	261, 280, 309, 427
ApaI	GGGCCC	1 cut(s)	431
ApeKI	GCWGC	2 cut(s)	595, 598
ApoI	RAATTY	1 cut(s)	470
ArsI	GACNNNNNNTTYG	2 cut(s)	406, 438
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	4 cut(s)	218, 242, 303, 509
AspS9I	GGNCC	5 cut(s)	256, 280, 418, 427, 428
AsuC2I	CCSGG	3 cut(s)	260, 320, 437
AsuHPI	GGTGA	1 cut(s)	286
AvaI	CYCGRG	2 cut(s)	219, 529
AvaII	GGWCC	2 cut(s)	256, 418
AxyI	CCTNAGG	1 cut(s)	296
BaeGI	GKGCMC	1 cut(s)	431
BanII	GRGCYC	3 cut(s)	320, 431, 536
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	536
BbvI	GCAGC	2 cut(s)	582, 585
BccI	CCATC	2 cut(s)	181, 271
BceAI	ACGGC	3 cut(s)	24, 583, 588
BcgI	CGANNNNNNTGC	4 cut(s)	520, 554, 568, 602
BciT130I	CCWGG	3 cut(s)	26, 272, 284
BcnI	CCSGG	3 cut(s)	260, 320, 437
BcoDI	GTCTC	2 cut(s)	434, 525
BfoI	RGCGCY	1 cut(s)	510
BisI	GCNGC	3 cut(s)	169, 596, 599
BlsI	GCNGC	3 cut(s)	170, 597, 600
Bme1390I	CCNGG	6 cut(s)	26, 260, 272, 284, 320, 437
Bme18I	GGWCC	2 cut(s)	256, 418
BmeT110I	CYCGRG	2 cut(s)	219, 529
BmgT120I	GGNCC	5 cut(s)	256, 280, 418, 427, 428
BmiI	GGNNCC	3 cut(s)	258, 429, 430
BmrFI	CCNGG	6 cut(s)	26, 260, 272, 284, 320, 437
BmrI	ACTGGG	1 cut(s)	416
BmsI	GCATC	2 cut(s)	349, 475
BmuI	ACTGGG	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	334
BpuMI	CCSGG	3 cut(s)	260, 320, 437
BsaBI	GATNNNNATC	1 cut(s)	196
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	4 cut(s)	24, 243, 334, 371
BsaWI	WCCGGW	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	6 cut(s)	80, 137, 138, 225, 277, 436
Bse1I	ACTGG	1 cut(s)	411
Bse21I	CCTNAGG	1 cut(s)	296
Bse8I	GATNNNNATC	1 cut(s)	196
BseAI	TCCGGA	1 cut(s)	80
BseBI	CCWGG	3 cut(s)	26, 272, 284
BseDI	CCNNGG	4 cut(s)	24, 243, 334, 371
BseGI	GGATG	1 cut(s)	490
BseJI	GATNNNNATC	1 cut(s)	196
BseLI	CCNNNNNNNGG	6 cut(s)	80, 137, 138, 225, 277, 436
BseMII	CTCAG	2 cut(s)	287, 549
BseNI	ACTGG	1 cut(s)	411
BseSI	GKGCMC	1 cut(s)	431
BseXI	GCAGC	2 cut(s)	582, 585
BseYI	CCCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	467
Bsh1236I	CGCG	4 cut(s)	216, 240, 303, 518
BshFI	GGCC	4 cut(s)	263, 282, 311, 429
BsiHKAI	GWGCWC	1 cut(s)	536
BsiHKCI	CYCGRG	2 cut(s)	219, 529
BsiSI	CCGG	6 cut(s)	81, 172, 260, 320, 354, 437
BslFI	GGGAC	2 cut(s)	19, 242
BslI	CCNNNNNNNGG	6 cut(s)	80, 137, 138, 225, 277, 436
BsmAI	GTCTC	2 cut(s)	434, 525
BsmBI	CGTCTC	1 cut(s)	525
BsmFI	GGGAC	2 cut(s)	19, 242
BsnI	GGCC	4 cut(s)	263, 282, 311, 429
Bso31I	GGTCTC	1 cut(s)	434
BsoBI	CYCGRG	2 cut(s)	219, 529
Bsp120I	GGGCCC	1 cut(s)	427
Bsp1286I	GDGCHC	3 cut(s)	320, 431, 536
Bsp13I	TCCGGA	1 cut(s)	80
Bsp143I	GATC	8 cut(s)	83, 211, 223, 235, 291, 410, 500, 583
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	3 cut(s)	43, 169, 303
BspANI	GGCC	4 cut(s)	263, 282, 311, 429
BspCNI	CTCAG	2 cut(s)	288, 548
BspEI	TCCGGA	1 cut(s)	80
BspFNI	CGCG	4 cut(s)	216, 240, 303, 518
BspLI	GGNNCC	3 cut(s)	258, 429, 430
BspPI	GGATC	4 cut(s)	91, 286, 418, 508
BspTNI	GGTCTC	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	411
BssECI	CCNNGG	4 cut(s)	24, 243, 334, 371
BssMI	GATC	8 cut(s)	83, 211, 223, 235, 291, 410, 500, 583
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	3 cut(s)	26, 272, 284
Bst4CI	ACNGT	2 cut(s)	422, 445
Bst6I	CTCTTC	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	364, 368, 549
BstDEI	CTNAG	2 cut(s)	296, 535
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	490
BstFNI	CGCG	4 cut(s)	216, 240, 303, 518
BstH2I	RGCGCY	1 cut(s)	510
BstHHI	GCGC	4 cut(s)	218, 242, 303, 509
BstKTI	GATC	8 cut(s)	86, 214, 226, 238, 294, 413, 503, 586
BstMAI	GTCTC	2 cut(s)	434, 525
BstMBI	GATC	8 cut(s)	83, 211, 223, 235, 291, 410, 500, 583
BstMWI	GCNNNNNNNGC	5 cut(s)	248, 363, 494, 515, 595
BstNI	CCWGG	3 cut(s)	26, 272, 284
BstSCI	CCNGG	6 cut(s)	24, 258, 270, 282, 318, 435
BstSLI	GKGCMC	1 cut(s)	431
BstUI	CGCG	4 cut(s)	216, 240, 303, 518
BstV1I	GCAGC	2 cut(s)	582, 585
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	291
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	291
Bsu36I	CCTNAGG	1 cut(s)	296
BsuRI	GGCC	4 cut(s)	263, 282, 311, 429
BtgI	CCRYGG	1 cut(s)	243
BtgZI	GCGATG	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	490
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	3 cut(s)	364, 368, 549
CfoI	GCGC	4 cut(s)	218, 242, 303, 509
Cfr13I	GGNCC	5 cut(s)	256, 280, 418, 427, 428
CpoI	CGGWCCG	1 cut(s)	418
CseI	GACGC	2 cut(s)	507, 578
CsiI	ACCWGGT	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	229, 404
CspI	CGGWCCG	1 cut(s)	418
CviAII	CATG	3 cut(s)	209, 244, 481
CviQI	GTAC	2 cut(s)	229, 404
DdeI	CTNAG	2 cut(s)	296, 535
DpnI	GATC	8 cut(s)	85, 213, 225, 237, 293, 412, 502, 585
DpnII	GATC	8 cut(s)	83, 211, 223, 235, 291, 410, 500, 583
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	243
Eco147I	AGGCCT	1 cut(s)	311
Eco24I	GRGCYC	3 cut(s)	320, 431, 536
Eco31I	GGTCTC	1 cut(s)	434
Eco47I	GGWCC	2 cut(s)	256, 418
Eco53kI	GAGCTC	1 cut(s)	534
Eco81I	CCTNAGG	1 cut(s)	296
Eco88I	CYCGRG	2 cut(s)	219, 529
EcoICRI	GAGCTC	1 cut(s)	534
EcoO109I	RGGNCCY	2 cut(s)	256, 428
EcoRI	GAATTC	1 cut(s)	470
EcoRII	CCWGG	3 cut(s)	24, 270, 282
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	3 cut(s)	320, 431, 536
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	525
FaeI	CATG	3 cut(s)	212, 247, 484
FaiI	YATR	4 cut(s)	138, 210, 245, 482
FaqI	GGGAC	2 cut(s)	19, 242
FatI	CATG	3 cut(s)	208, 243, 480
FauI	CCCGC	1 cut(s)	296
Fnu4HI	GCNGC	3 cut(s)	169, 596, 599
FokI	GGATG	1 cut(s)	497
FriOI	GRGCYC	3 cut(s)	320, 431, 536
Fsp4HI	GCNGC	3 cut(s)	169, 596, 599
GlaI	GCGC	4 cut(s)	217, 241, 302, 508
GluI	GCNGC	3 cut(s)	169, 596, 599
GsaI	CCCAGC	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	510
HaeIII	GGCC	4 cut(s)	263, 282, 311, 429
HapII	CCGG	6 cut(s)	81, 172, 260, 320, 354, 437
HgaI	GACGC	2 cut(s)	507, 578
HhaI	GCGC	4 cut(s)	218, 242, 303, 509
Hin1II	CATG	3 cut(s)	212, 247, 484
Hin6I	GCGC	4 cut(s)	216, 240, 301, 507
HinP1I	GCGC	4 cut(s)	216, 240, 301, 507
HinfI	GANTC	5 cut(s)	13, 192, 339, 603, 608
HpaII	CCGG	6 cut(s)	81, 172, 260, 320, 354, 437
HphI	GGTGA	1 cut(s)	286
Hpy188I	TCNGA	3 cut(s)	186, 235, 344
Hpy188III	TCNNGA	4 cut(s)	81, 289, 295, 395
Hpy99I	CGWCG	3 cut(s)	418, 580, 594
HpyAV	CCTTC	2 cut(s)	247, 520
HpyCH4III	ACNGT	2 cut(s)	422, 445
HpyCH4V	TGCA	2 cut(s)	448, 467
HpyF10VI	GCNNNNNNNGC	5 cut(s)	248, 363, 494, 515, 595
HpyF3I	CTNAG	2 cut(s)	296, 535
Hsp92II	CATG	3 cut(s)	212, 247, 484
HspAI	GCGC	4 cut(s)	216, 240, 301, 507
Kpn2I	TCCGGA	1 cut(s)	80
Kzo9I	GATC	8 cut(s)	83, 211, 223, 235, 291, 410, 500, 583
LmnI	GCTCC	2 cut(s)	26, 83
Lsp1109I	GCAGC	2 cut(s)	582, 585
LweI	GCATC	2 cut(s)	349, 475
MabI	ACCWGGT	1 cut(s)	270
MalI	GATC	8 cut(s)	85, 213, 225, 237, 293, 412, 502, 585
MboI	GATC	8 cut(s)	83, 211, 223, 235, 291, 410, 500, 583
MboII	GAAGA	7 cut(s)	8, 26, 146, 187, 337, 398, 573
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	3 cut(s)	320, 431, 536
MluCI	AATT	2 cut(s)	100, 470
MluI	ACGCGT	1 cut(s)	516
MlyI	GAGTC	2 cut(s)	333, 597
MnlI	CCTC	6 cut(s)	32, 84, 291, 301, 329, 366
MroI	TCCGGA	1 cut(s)	80
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	1 cut(s)	459
MspI	CCGG	6 cut(s)	81, 172, 260, 320, 354, 437
MspR9I	CCNGG	6 cut(s)	26, 260, 272, 284, 320, 437
MvaI	CCWGG	3 cut(s)	26, 272, 284
MvnI	CGCG	4 cut(s)	216, 240, 303, 518
MwoI	GCNNNNNNNGC	5 cut(s)	248, 363, 494, 515, 595
NciI	CCSGG	3 cut(s)	260, 320, 437
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	8 cut(s)	83, 211, 223, 235, 291, 410, 500, 583
NlaIII	CATG	3 cut(s)	212, 247, 484
NlaIV	GGNNCC	3 cut(s)	258, 429, 430
NmeAIII	GCCGAG	1 cut(s)	396
PceI	AGGCCT	1 cut(s)	311
PcsI	WCGNNNNNNNCGW	1 cut(s)	598
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	3 cut(s)	13, 192, 608
PkrI	GCNGC	3 cut(s)	170, 597, 600
PleI	GAGTC	2 cut(s)	333, 597
PpsI	GAGTC	2 cut(s)	333, 597
PpuMI	RGGWCCY	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	536
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	3 cut(s)	24, 270, 282
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	3 cut(s)	24, 270, 282
PspN4I	GGNNCC	3 cut(s)	258, 429, 430
PspOMI	GGGCCC	1 cut(s)	427
PspPI	GGNCC	5 cut(s)	256, 280, 418, 427, 428
PspPPI	RGGWCCY	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	291
RsaI	GTAC	2 cut(s)	230, 405
RsaNI	GTAC	2 cut(s)	229, 404
Rsr2I	CGGWCCG	1 cut(s)	418
RsrII	CGGWCCG	1 cut(s)	418
SacI	GAGCTC	1 cut(s)	536
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	3 cut(s)	169, 596, 599
Sau3AI	GATC	8 cut(s)	83, 211, 223, 235, 291, 410, 500, 583
Sau96I	GGNCC	5 cut(s)	256, 280, 418, 427, 428
SchI	GAGTC	2 cut(s)	333, 597
ScrFI	CCNGG	6 cut(s)	26, 260, 272, 284, 320, 437
SduI	GDGCHC	3 cut(s)	320, 431, 536
SetI	ASST	6 cut(s)	258, 273, 288, 465, 480, 536
SexAI	ACCWGGT	1 cut(s)	270
SfaNI	GCATC	2 cut(s)	349, 475
SinI	GGWCC	2 cut(s)	256, 418
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	2 cut(s)	100, 470
SseBI	AGGCCT	1 cut(s)	311
SsiI	CCGC	3 cut(s)	43, 169, 303
SstI	GAGCTC	1 cut(s)	536
StuI	AGGCCT	1 cut(s)	311
StyD4I	CCNGG	6 cut(s)	24, 258, 270, 282, 318, 435
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	422, 445
TaqI	TCGA	4 cut(s)	37, 413, 503, 606
TasI	AATT	2 cut(s)	100, 470
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	3 cut(s)	13, 192, 608
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	1 cut(s)	543
TseI	GCWGC	2 cut(s)	595, 598
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	1 cut(s)	543
VpaK11BI	GGWCC	2 cut(s)	256, 418
XapI	RAATTY	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.