Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Forward (+)

1314357 .. 1314935

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG017900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGGACGGCGATTCTCCGATCACAGGATTGTCTTCGAGGTCGTTTCCGCCACGAAGCCCTAGCCATAACCTTGACCTCACGCTCCGGATCGCGCCGGAGCCCCAATTTTTCTAACCCTAACCCTAACTCCGGCTCTAATGGCTCGCAGTCTCGCCGCCGGAAGAGGAGTCCGGTCGCCGTTCAATCCAATCAACGCGATCGGATGGTGGCGAAGGTTCCGGGGAAGAACTTGGTGATGGGGCAGGTGAAGATCCTCAGGCGCGGCGAGGCGTTGAATCCGGCGAGGAGAGTGGTCGGAGTTGGTGGTAGAGATGATCGGAAGGCGAGGGAGGAGAGCGTGGAGTGTACGGATTCGGATCTGGTGTTGGGATCCACGGACCGGTTGGGACCCGACCCGGAGACGGTGCAGAAGCAGATCAAGGTTGCAGAGTTCAAGGTGATGGATGCGATCTACGCTGGATCGGGAGCTTATTATGCTTCTCCGCCGCCGAGCTCCGTTCCGTTGCCGGCTTTTTTGGCTAAGAACGGAGCGGCGACCAGCGATCTGCGAAGGCTGCTGCGTCTCGATTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

192

Amino Acids

20.87

Weight (kDa)

10.84

Isoelectric Point (pI)

76.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	235
Acc36I	ACCTGC	1 cut(s)	235
AccBSI	CCGCTC	1 cut(s)	533
AccII	CGCG	3 cut(s)	94, 198, 264
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	6 cut(s)	49, 157, 264, 485, 488, 533
AclWI	GGATC	6 cut(s)	97, 247, 366, 366, 379, 469
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	4 cut(s)	25, 131, 381, 403
AgeI	ACCGGT	1 cut(s)	381
AgsI	TTSAA	3 cut(s)	185, 277, 436
AluBI	AGCT	2 cut(s)	470, 495
AluI	AGCT	2 cut(s)	470, 495
Alw21I	GWGCWC	1 cut(s)	497
Alw26I	GTCTC	3 cut(s)	156, 395, 569
AlwI	GGATC	6 cut(s)	97, 247, 366, 366, 379, 469
Aor13HI	TCCGGA	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	556, 559
AsiGI	ACCGGT	1 cut(s)	381
AspLEI	GCGC	2 cut(s)	96, 264
AspS9I	GGNCC	2 cut(s)	379, 389
AsuC2I	CCSGG	2 cut(s)	222, 398
AsuHPI	GGTGA	3 cut(s)	247, 259, 451
AvaII	GGWCC	2 cut(s)	379, 389
AxyI	CCTNAGG	1 cut(s)	257
BamHI	GGATCC	1 cut(s)	371
BanII	GRGCYC	2 cut(s)	104, 497
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	497
BbvI	GCAGC	2 cut(s)	543, 546
BccI	CCATC	3 cut(s)	199, 232, 436
BceAI	ACGGC	2 cut(s)	24, 164
BcnI	CCSGG	2 cut(s)	222, 398
BcoDI	GTCTC	3 cut(s)	156, 395, 569
BfaI	CTAG	1 cut(s)	62
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	6 cut(s)	157, 265, 488, 534, 557, 560
BlsI	GCNGC	6 cut(s)	158, 266, 489, 535, 558, 561
Bme1390I	CCNGG	2 cut(s)	222, 398
Bme18I	GGWCC	2 cut(s)	379, 389
BmgT120I	GGNCC	2 cut(s)	379, 389
BmiI	GGNNCC	5 cut(s)	101, 219, 373, 390, 391
BmrFI	CCNGG	2 cut(s)	222, 398
BmsI	GCATC	1 cut(s)	436
BpiI	GAAGAC	1 cut(s)	26
BpuMI	CCSGG	2 cut(s)	222, 398
BsaBI	GATNNNNATC	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	221, 375
BsaWI	WCCGGW	3 cut(s)	86, 172, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 131, 381, 403
Bse118I	RCCGGY	2 cut(s)	381, 508
Bse21I	CCTNAGG	1 cut(s)	257
Bse8I	GATNNNNATC	1 cut(s)	357
BseAI	TCCGGA	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	221, 375
BseGI	GGATG	2 cut(s)	210, 451
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	4 cut(s)	25, 131, 381, 403
BseMII	CTCAG	1 cut(s)	271
BseRI	GAGGAG	3 cut(s)	181, 301, 347
BseXI	GCAGC	2 cut(s)	543, 546
BsgI	GTGCAG	1 cut(s)	428
Bsh1236I	CGCG	3 cut(s)	94, 198, 264
Bsh1285I	CGRYCG	2 cut(s)	177, 202
BshTI	ACCGGT	1 cut(s)	381
BsiEI	CGRYCG	2 cut(s)	177, 202
BsiHKAI	GWGCWC	1 cut(s)	497
BslFI	GGGAC	2 cut(s)	19, 402
BslI	CCNNNNNNNGG	4 cut(s)	25, 131, 381, 403
BsmAI	GTCTC	3 cut(s)	156, 395, 569
BsmBI	CGTCTC	2 cut(s)	395, 569
BsmFI	GGGAC	2 cut(s)	19, 402
Bsp1286I	GDGCHC	2 cut(s)	104, 497
Bsp13I	TCCGGA	1 cut(s)	86
BspACI	CCGC	6 cut(s)	49, 157, 264, 485, 488, 533
BspCNI	CTCAG	1 cut(s)	270
BspEI	TCCGGA	1 cut(s)	86
BspFNI	CGCG	3 cut(s)	94, 198, 264
BspLI	GGNNCC	5 cut(s)	101, 219, 373, 390, 391
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	6 cut(s)	97, 247, 366, 366, 379, 469
BsrBI	CCGCTC	1 cut(s)	533
BsrFI	RCCGGY	2 cut(s)	381, 508
BssAI	RCCGGY	2 cut(s)	381, 508
BssECI	CCNNGG	2 cut(s)	221, 375
Bst4CI	ACNGT	1 cut(s)	406
Bst6I	CTCTTC	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	146, 510
BstDEI	CTNAG	2 cut(s)	257, 522
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	210, 451
BstFNI	CGCG	3 cut(s)	94, 198, 264
BstHHI	GCGC	2 cut(s)	96, 264
BstMAI	GTCTC	3 cut(s)	156, 395, 569
BstMCI	CGRYCG	2 cut(s)	177, 202
BstMWI	GCNNNNNNNGC	5 cut(s)	141, 455, 476, 518, 556
BstSCI	CCNGG	2 cut(s)	220, 396
BstUI	CGCG	3 cut(s)	94, 198, 264
BstV1I	GCAGC	2 cut(s)	543, 546
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	3 cut(s)	252, 358, 371
BstYI	RGATCY	3 cut(s)	252, 358, 371
Bsu36I	CCTNAGG	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	2 cut(s)	210, 451
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	146, 510
CfoI	GCGC	2 cut(s)	96, 264
Cfr10I	RCCGGY	2 cut(s)	381, 508
Cfr13I	GGNCC	2 cut(s)	379, 389
CpoI	CGGWCCG	1 cut(s)	379
CseI	GACGC	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	348
CspAI	ACCGGT	1 cut(s)	381
CspI	CGGWCCG	1 cut(s)	379
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	2 cut(s)	257, 522
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
EciI	GGCGGA	2 cut(s)	38, 474
Ecl136II	GAGCTC	1 cut(s)	495
Eco24I	GRGCYC	2 cut(s)	104, 497
Eco47I	GGWCC	2 cut(s)	379, 389
Eco53kI	GAGCTC	1 cut(s)	495
Eco81I	CCTNAGG	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	389
EcoT38I	GRGCYC	2 cut(s)	104, 497
Esp3I	CGTCTC	2 cut(s)	395, 569
FaiI	YATR	2 cut(s)	68, 477
FaqI	GGGAC	2 cut(s)	19, 402
Fnu4HI	GCNGC	6 cut(s)	157, 265, 488, 534, 557, 560
FokI	GGATG	2 cut(s)	217, 458
FriOI	GRGCYC	2 cut(s)	104, 497
Fsp4HI	GCNGC	6 cut(s)	157, 265, 488, 534, 557, 560
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	2 cut(s)	95, 263
GluI	GCNGC	6 cut(s)	157, 265, 488, 534, 557, 560
HgaI	GACGC	1 cut(s)	551
HhaI	GCGC	2 cut(s)	96, 264
Hin6I	GCGC	2 cut(s)	94, 262
HinP1I	GCGC	2 cut(s)	94, 262
HinfI	GANTC	4 cut(s)	13, 169, 277, 353
HphI	GGTGA	3 cut(s)	247, 259, 451
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	5 cut(s)	20, 204, 299, 321, 358
Hpy188III	TCNNGA	3 cut(s)	87, 465, 566
Hpy8I	GTNNAC	1 cut(s)	348
HpyAV	CCTTC	3 cut(s)	208, 316, 546
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4V	TGCA	2 cut(s)	409, 428
HpyF10VI	GCNNNNNNNGC	5 cut(s)	141, 455, 476, 518, 556
HpyF3I	CTNAG	2 cut(s)	257, 522
HspAI	GCGC	2 cut(s)	94, 262
KflI	GGGWCCC	1 cut(s)	389
Kpn2I	TCCGGA	1 cut(s)	86
KroI	GCCGGC	1 cut(s)	508
KroNI	GCCGGC	1 cut(s)	510
LmnI	GCTCC	5 cut(s)	89, 99, 467, 500, 530
Lsp1109I	GCAGC	2 cut(s)	543, 546
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	1 cut(s)	62
MbiI	CCGCTC	1 cut(s)	533
MboII	GAAGA	4 cut(s)	26, 175, 238, 262
MflI	RGATCY	3 cut(s)	252, 358, 371
MhlI	GDGCHC	2 cut(s)	104, 497
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	8 cut(s)	32, 88, 159, 262, 266, 279, 321, 325
MroI	TCCGGA	1 cut(s)	86
MroNI	GCCGGC	1 cut(s)	508
MspR9I	CCNGG	2 cut(s)	222, 398
MvnI	CGCG	3 cut(s)	94, 198, 264
MwoI	GCNNNNNNNGC	5 cut(s)	141, 455, 476, 518, 556
NaeI	GCCGGC	1 cut(s)	510
NciI	CCSGG	2 cut(s)	222, 398
NgoMIV	GCCGGC	1 cut(s)	508
NlaIV	GGNNCC	5 cut(s)	101, 219, 373, 390, 391
NmeAIII	GCCGAG	1 cut(s)	516
PaqCI	CACCTGC	1 cut(s)	235
PdiI	GCCGGC	1 cut(s)	510
PfeI	GAWTC	3 cut(s)	13, 277, 353
PinAI	ACCGGT	1 cut(s)	381
PkrI	GCNGC	6 cut(s)	158, 266, 489, 535, 558, 561
Ple19I	CGATCG	1 cut(s)	202
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
PpuMI	RGGWCCY	1 cut(s)	389
Psp124BI	GAGCTC	1 cut(s)	497
Psp5II	RGGWCCY	1 cut(s)	389
PspN4I	GGNNCC	5 cut(s)	101, 219, 373, 390, 391
PspPI	GGNCC	2 cut(s)	379, 389
PspPPI	RGGWCCY	1 cut(s)	389
PsuI	RGATCY	3 cut(s)	252, 358, 371
PvuI	CGATCG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
Rsr2I	CGGWCCG	1 cut(s)	379
RsrII	CGGWCCG	1 cut(s)	379
SacI	GAGCTC	1 cut(s)	497
SatI	GCNGC	6 cut(s)	157, 265, 488, 534, 557, 560
Sau96I	GGNCC	2 cut(s)	379, 389
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	2 cut(s)	222, 398
SduI	GDGCHC	2 cut(s)	104, 497
SetI	ASST	9 cut(s)	43, 74, 80, 219, 249, 426, 441, 472, 497
SfaNI	GCATC	1 cut(s)	436
SinI	GGWCC	2 cut(s)	379, 389
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	6 cut(s)	49, 157, 264, 485, 488, 533
SspMI	CTAG	1 cut(s)	62
SstI	GAGCTC	1 cut(s)	497
StyD4I	CCNGG	2 cut(s)	220, 396
TaaI	ACNGT	1 cut(s)	406
TaqI	TCGA	2 cut(s)	37, 567
TasI	AATT	1 cut(s)	106
TauI	GCSGC	4 cut(s)	159, 267, 490, 536
TfiI	GAWTC	3 cut(s)	13, 277, 353
TseI	GCWGC	2 cut(s)	556, 559
TspGWI	ACGGA	5 cut(s)	365, 392, 487, 492, 543
VpaK11BI	GGWCC	2 cut(s)	379, 389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.