Rh5DG311200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003311
Physical Location & Seq
Forward (+)
39747007 .. 39748427
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG311200.1

Sequence Viewer

Length: 381 bp
ATGGCTACAGTTCCAACCCATAGGAGCCCTAGCCCTAACCTTGACCCTACGCTCCGGCGCGGTGAGGCTTTGAATCCGGCAATTGAAGATGAGAGAGAGGGCGGAGTTGGAAGAGATGATCGGAAGGCGAGGGAGGAGAGCGTGGAGTGTTCGGATTCGGATCGGGTGTTGGGATCCACGGACAGGTTGGGACCCGACCCGGAGACGGTGCAGAAGCAGATCAAGGTTGCAGAGTTCAAGGTGATGGATGCGATCTACGCTGGATCGGGGGCTTATTATGCTTCTCCGCCGTCGAGCTCCATTCCGCTGCCGGCTTCTTTGGCTAAGTACGGTGCAGCGACCAGCAATCTGCGTCGGCTGCTGCGTCTCGATTTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

126

Amino Acids

13.6

Weight (kDa)

5.44

Isoelectric Point (pI)

65.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 60
AciI CCGC 4 cut(s) 60, 102, 287, 305
AclWI GGATC 4 cut(s) 168, 168, 181, 271
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 2 cut(s) 183, 205
AgsI TTSAA 3 cut(s) 73, 86, 238
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
Alw21I GWGCWC 1 cut(s) 299
Alw26I GTCTC 2 cut(s) 197, 371
AlwI GGATC 4 cut(s) 168, 168, 181, 271
ApeKI GCWGC 4 cut(s) 307, 335, 358, 361
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 74, 253
AvaII GGWCC 1 cut(s) 191
BamHI GGATCC 1 cut(s) 173
BanII GRGCYC 2 cut(s) 29, 299
Bbv12I GWGCWC 1 cut(s) 299
BbvI GCAGC 4 cut(s) 294, 345, 347, 348
BccI CCATC 1 cut(s) 238
BceAI ACGGC 1 cut(s) 274
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 2 cut(s) 197, 371
BfaI CTAG 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 4 cut(s) 308, 336, 359, 362
BlsI GCNGC 4 cut(s) 309, 337, 360, 363
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 4 cut(s) 26, 175, 192, 193
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 1 cut(s) 238
BpuMI CCSGG 1 cut(s) 200
BsaBI GATNNNNATC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 177
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 205
Bse118I RCCGGY 1 cut(s) 310
Bse8I GATNNNNATC 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 1 cut(s) 253
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 183, 205
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 4 cut(s) 294, 345, 347, 348
BsgI GTGCAG 2 cut(s) 230, 354
Bsh1236I CGCG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 299
BsiSI CCGG 4 cut(s) 55, 77, 200, 311
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 2 cut(s) 183, 205
BsmAI GTCTC 2 cut(s) 197, 371
BsmBI CGTCTC 2 cut(s) 197, 371
BsmFI GGGAC 1 cut(s) 204
Bsp1286I GDGCHC 2 cut(s) 29, 299
Bsp143I GATC 6 cut(s) 118, 160, 173, 219, 252, 263
BspACI CCGC 4 cut(s) 60, 102, 287, 305
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 4 cut(s) 26, 175, 192, 193
BspPI GGATC 4 cut(s) 168, 168, 181, 271
BsrFI RCCGGY 1 cut(s) 310
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 6 cut(s) 118, 160, 173, 219, 252, 263
Bst4CI ACNGT 3 cut(s) 10, 208, 332
Bst6I CTCTTC 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 324
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 253
BstFNI CGCG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 6 cut(s) 121, 163, 176, 222, 255, 266
BstMAI GTCTC 2 cut(s) 197, 371
BstMBI GATC 6 cut(s) 118, 160, 173, 219, 252, 263
BstMWI GCNNNNNNNGC 4 cut(s) 257, 278, 320, 358
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 6
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 4 cut(s) 294, 345, 347, 348
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 253
Cac8I GCNNGC 1 cut(s) 312
CfoI GCGC 1 cut(s) 60
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 1 cut(s) 191
CseI GACGC 2 cut(s) 341, 353
Csp6I GTAC 1 cut(s) 328
CviJI RGCY 9 cut(s) 5, 27, 33, 68, 272, 297, 314, 323, 358
CviKI_1 RGCY 9 cut(s) 5, 27, 33, 68, 272, 297, 314, 323, 358
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 1 cut(s) 324
DpnI GATC 6 cut(s) 120, 162, 175, 221, 254, 265
DpnII GATC 6 cut(s) 118, 160, 173, 219, 252, 263
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
EciI GGCGGA 2 cut(s) 117, 276
Ecl136II GAGCTC 1 cut(s) 297
Eco24I GRGCYC 2 cut(s) 29, 299
Eco47I GGWCC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 297
EcoICRI GAGCTC 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 191
EcoT38I GRGCYC 2 cut(s) 29, 299
Esp3I CGTCTC 2 cut(s) 197, 371
FaiI YATR 2 cut(s) 21, 279
FaqI GGGAC 1 cut(s) 204
Fnu4HI GCNGC 4 cut(s) 308, 336, 359, 362
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 2 cut(s) 29, 299
Fsp4HI GCNGC 4 cut(s) 308, 336, 359, 362
FspBI CTAG 1 cut(s) 30
GlaI GCGC 1 cut(s) 59
GluI GCNGC 4 cut(s) 308, 336, 359, 362
HapII CCGG 4 cut(s) 55, 77, 200, 311
HgaI GACGC 2 cut(s) 341, 353
HhaI GCGC 1 cut(s) 60
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HinfI GANTC 2 cut(s) 73, 155
HpaII CCGG 4 cut(s) 55, 77, 200, 311
HphI GGTGA 2 cut(s) 74, 253
Hpy188I TCNGA 3 cut(s) 123, 154, 160
Hpy188III TCNNGA 1 cut(s) 368
Hpy99I CGWCG 2 cut(s) 295, 357
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 3 cut(s) 10, 208, 332
HpyCH4V TGCA 3 cut(s) 211, 230, 335
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 278, 320, 358
HpyF3I CTNAG 1 cut(s) 324
HspAI GCGC 1 cut(s) 58
KflI GGGWCCC 1 cut(s) 191
KroI GCCGGC 1 cut(s) 310
KroNI GCCGGC 1 cut(s) 312
Kzo9I GATC 6 cut(s) 118, 160, 173, 219, 252, 263
LmnI GCTCC 3 cut(s) 24, 57, 302
LpnPI CCDG 7 cut(s) 68, 90, 169, 213, 246, 324, 355
Lsp1109I GCAGC 4 cut(s) 294, 345, 347, 348
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 30
MalI GATC 6 cut(s) 120, 162, 175, 221, 254, 265
MboI GATC 6 cut(s) 118, 160, 173, 219, 252, 263
MboII GAAGA 2 cut(s) 98, 123
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 2 cut(s) 29, 299
MluCI AATT 1 cut(s) 81
MmeI TCCRAC 2 cut(s) 38, 88
MnlI CCTC 4 cut(s) 58, 91, 123, 127
MroNI GCCGGC 1 cut(s) 310
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 4 cut(s) 55, 77, 200, 311
MspR9I CCNGG 1 cut(s) 200
MunI CAATTG 1 cut(s) 81
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 4 cut(s) 257, 278, 320, 358
NaeI GCCGGC 1 cut(s) 312
NciI CCSGG 1 cut(s) 200
NdeII GATC 6 cut(s) 118, 160, 173, 219, 252, 263
NgoMIV GCCGGC 1 cut(s) 310
NlaIV GGNNCC 4 cut(s) 26, 175, 192, 193
PcsI WCGNNNNNNNCGW 1 cut(s) 361
PdiI GCCGGC 1 cut(s) 312
PfeI GAWTC 2 cut(s) 73, 155
PkrI GCNGC 4 cut(s) 309, 337, 360, 363
PpuMI RGGWCCY 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 299
Psp5II RGGWCCY 1 cut(s) 191
PspN4I GGNNCC 4 cut(s) 26, 175, 192, 193
PspPI GGNCC 1 cut(s) 191
PspPPI RGGWCCY 1 cut(s) 191
PsuI RGATCY 1 cut(s) 173
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SacI GAGCTC 1 cut(s) 299
SatI GCNGC 4 cut(s) 308, 336, 359, 362
Sau3AI GATC 6 cut(s) 118, 160, 173, 219, 252, 263
Sau96I GGNCC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 2 cut(s) 29, 299
SetI ASST 5 cut(s) 42, 188, 228, 243, 299
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 191
Sse9I AATT 1 cut(s) 81
SsiI CCGC 4 cut(s) 60, 102, 287, 305
SspMI CTAG 1 cut(s) 30
SstI GAGCTC 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 198
TaaI ACNGT 3 cut(s) 10, 208, 332
TaqI TCGA 2 cut(s) 293, 369
TasI AATT 1 cut(s) 81
TfiI GAWTC 2 cut(s) 73, 155
TseI GCWGC 4 cut(s) 307, 335, 358, 361
TspGWI ACGGA 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.