Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Reverse (-)

41804465 .. 41804876

Gene Structure 412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025075

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGAACAGACAAAAGCACACATCTTCCGATTGTGCAGGAGCCCTAGCCCTAACCTTGACCCTACGCTCCGGCGCGGCGAGGCTTTGAATCGGGCAACGGAAGATGAGAGAGAGGGCGGAGTTGGAAGAGATGATCGGAAGGCGAGGGAGGAGAGCGTGGAGTGTTCGGATTCGGATCTGGTGTTGGGATCCACGGACAGGTTGGGACCCGACCCGGAGACGGTGCAGAAGCAGATCAAGGTTGCAGAGTTCAAGCGACCAGCAATCTGCGCCGGCTGCTGCGTCTCGATTGGGTGTGAACACGTGGCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

105

Amino Acids

11.42

Weight (kDa)

5.41

Isoelectric Point (pI)

54.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	75
AciI	CCGC	2 cut(s)	75, 117
AclWI	GGATC	3 cut(s)	183, 183, 196
AcvI	CACGTG	1 cut(s)	304
AfiI	CCNNNNNNNGG	2 cut(s)	198, 220
AflIII	ACRYGT	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	88, 253
Alw26I	GTCTC	2 cut(s)	212, 289
AlwI	GGATC	3 cut(s)	183, 183, 196
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	2 cut(s)	276, 279
AspLEI	GCGC	2 cut(s)	75, 272
AspS9I	GGNCC	2 cut(s)	206, 307
AsuC2I	CCSGG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	44
BbrPI	CACGTG	1 cut(s)	304
BbvI	GCAGC	2 cut(s)	263, 266
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	212, 289
BfaI	CTAG	1 cut(s)	45
BisI	GCNGC	3 cut(s)	76, 277, 280
BlsI	GCNGC	3 cut(s)	77, 278, 281
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	206, 307
BmiI	GGNNCC	4 cut(s)	41, 190, 207, 208
BmrFI	CCNGG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	304
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 220
Bse118I	RCCGGY	1 cut(s)	272
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	192
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	198, 220
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	263, 266
BsgI	GTGCAG	2 cut(s)	55, 245
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	308
BsiSI	CCGG	3 cut(s)	70, 215, 273
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	198, 220
BsmAI	GTCTC	2 cut(s)	212, 289
BsmBI	CGTCTC	2 cut(s)	212, 289
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	4 cut(s)	133, 175, 188, 234
BspACI	CCGC	2 cut(s)	75, 117
BspANI	GGCC	1 cut(s)	308
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	4 cut(s)	41, 190, 207, 208
BspPI	GGATC	3 cut(s)	183, 183, 196
BsrFI	RCCGGY	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	4 cut(s)	133, 175, 188, 234
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	121
BstBAI	YACGTR	1 cut(s)	304
BstC8I	GCNNGC	1 cut(s)	274
BstDSI	CCRYGG	1 cut(s)	192
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	75, 272
BstKTI	GATC	4 cut(s)	136, 178, 191, 237
BstMAI	GTCTC	2 cut(s)	212, 289
BstMBI	GATC	4 cut(s)	133, 175, 188, 234
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 276
BstSCI	CCNGG	1 cut(s)	213
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	263, 266
BstX2I	RGATCY	2 cut(s)	175, 188
BstYI	RGATCY	2 cut(s)	175, 188
BsuRI	GGCC	1 cut(s)	308
BtgI	CCRYGG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	274
CfoI	GCGC	2 cut(s)	75, 272
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	206, 307
CseI	GACGC	1 cut(s)	271
CviJI	RGCY	5 cut(s)	42, 48, 83, 276, 308
CviKI_1	RGCY	5 cut(s)	42, 48, 83, 276, 308
DpnI	GATC	4 cut(s)	135, 177, 190, 236
DpnII	GATC	4 cut(s)	133, 175, 188, 234
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	206
Eco72I	CACGTG	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	44
Esp3I	CGTCTC	2 cut(s)	212, 289
FaqI	GGGAC	1 cut(s)	219
Fnu4HI	GCNGC	3 cut(s)	76, 277, 280
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	3 cut(s)	76, 277, 280
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	2 cut(s)	74, 271
GluI	GCNGC	3 cut(s)	76, 277, 280
HaeIII	GGCC	1 cut(s)	308
HapII	CCGG	3 cut(s)	70, 215, 273
HgaI	GACGC	1 cut(s)	271
HhaI	GCGC	2 cut(s)	75, 272
Hin6I	GCGC	2 cut(s)	73, 270
HinP1I	GCGC	2 cut(s)	73, 270
HinfI	GANTC	2 cut(s)	88, 170
HpaII	CCGG	3 cut(s)	70, 215, 273
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	5 cut(s)	29, 138, 169, 175, 314
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	299
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	3 cut(s)	36, 226, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 276
HpySE526I	ACGT	1 cut(s)	303
HspAI	GCGC	2 cut(s)	73, 270
KflI	GGGWCCC	1 cut(s)	206
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	133, 175, 188, 234
LmnI	GCTCC	2 cut(s)	39, 72
LpnPI	CCDG	7 cut(s)	22, 83, 164, 184, 228, 273, 286
Lsp1109I	GCAGC	2 cut(s)	263, 266
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	303
MalI	GATC	4 cut(s)	135, 177, 190, 236
MboI	GATC	4 cut(s)	133, 175, 188, 234
MboII	GAAGA	3 cut(s)	16, 113, 138
MflI	RGATCY	2 cut(s)	175, 188
MhlI	GDGCHC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	4 cut(s)	73, 106, 138, 142
MroNI	GCCGGC	1 cut(s)	272
MspI	CCGG	3 cut(s)	70, 215, 273
MspR9I	CCNGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	269, 276
NaeI	GCCGGC	1 cut(s)	274
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	4 cut(s)	133, 175, 188, 234
NgoMIV	GCCGGC	1 cut(s)	272
NlaIV	GGNNCC	4 cut(s)	41, 190, 207, 208
PdiI	GCCGGC	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	88, 170
PkrI	GCNGC	3 cut(s)	77, 278, 281
PmaCI	CACGTG	1 cut(s)	304
PmlI	CACGTG	1 cut(s)	304
Ppu21I	YACGTR	1 cut(s)	304
PpuMI	RGGWCCY	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	206
PspCI	CACGTG	1 cut(s)	304
PspN4I	GGNNCC	4 cut(s)	41, 190, 207, 208
PspPI	GGNCC	2 cut(s)	206, 307
PspPPI	RGGWCCY	1 cut(s)	206
PsuI	RGATCY	2 cut(s)	175, 188
SatI	GCNGC	3 cut(s)	76, 277, 280
Sau3AI	GATC	4 cut(s)	133, 175, 188, 234
Sau96I	GGNCC	2 cut(s)	206, 307
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	4 cut(s)	57, 203, 243, 306
SinI	GGWCC	1 cut(s)	206
SsiI	CCGC	2 cut(s)	75, 117
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	287
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	2 cut(s)	88, 170
TseI	GCWGC	2 cut(s)	276, 279
TspGWI	ACGGA	2 cut(s)	113, 209
VpaK11BI	GGWCC	1 cut(s)	206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.