Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010832.1

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Reverse (-)

29603 .. 31420

Gene Structure 1818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010832.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgaagccattgcctccaatgacgcacactgcctctggcctagccggcattagaaattccgactatgaatttgaaccatggagaggcttgatcactctctcccggcaactagctctagtagtccaagtgaactctagagaaaggtctgtggttacaggggatttgctcagtgaaccactccatgacctgaattggtgccttgaccaactccaaagccaactccaccggcaactcctataccaccaccgtgctcattggccatcgacgagtctagtccagcccaacctccacgaagtccgacaatcagctttgaatccggcaacggaagatgagagaaagggcagagttggaagagatgatcggaaggcgagggaggagagcgtggagtgttcggattcggatctggtgttaggatccacagacaggttgggacccgacccggagacggtgcagaagcagatcaaggttgcagagttcaaggtgatggatgcgatctacgctggatcgggggcttattatgctgctccgcagccgagctccattccgctgccggcttttttggctaaagtacggtgcagcgaccaacaatctgcgccggctgctgcgtctcgatttggtgtgaacacgtggccctccgacgatgatcggagagtgaccggaaggctgatcctgcttggttgtttgattggatggcggagacggtggaggattgaaatcagtggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

241

Amino Acids

27.01

Weight (kDa)

7.75

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	195
AciI	CCGC	3 cut(s)	527, 545, 694
AclWI	GGATC	5 cut(s)	408, 408, 421, 511, 661
AcoI	YGGCCR	1 cut(s)	257
AcsI	RAATTY	2 cut(s)	55, 68
AcvI	CACGTG	1 cut(s)	627
AfaI	GTAC	1 cut(s)	570
AfiI	CCNNNNNNNGG	3 cut(s)	83, 423, 445
AflIII	ACRYGT	1 cut(s)	624
AgsI	TTSAA	4 cut(s)	74, 313, 478, 713
AleI	CACNNNNGTG	1 cut(s)	246
AluBI	AGCT	3 cut(s)	113, 308, 537
AluI	AGCT	3 cut(s)	113, 308, 537
Alw21I	GWGCWC	2 cut(s)	253, 539
Alw26I	GTCTC	3 cut(s)	437, 612, 691
AlwI	GGATC	5 cut(s)	408, 408, 421, 511, 661
AlwNI	CAGNNNCTG	1 cut(s)	723
AoxI	GGCC	3 cut(s)	37, 257, 629
ApeKI	GCWGC	6 cut(s)	521, 529, 547, 576, 599, 602
ApoI	RAATTY	2 cut(s)	55, 68
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AspLEI	GCGC	1 cut(s)	595
AspS9I	GGNCC	2 cut(s)	431, 630
AsuC2I	CCSGG	2 cut(s)	103, 440
AsuHPI	GGTGA	1 cut(s)	493
AvaII	GGWCC	1 cut(s)	431
BalI	TGGCCA	1 cut(s)	259
BamHI	GGATCC	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	539
BbrPI	CACGTG	1 cut(s)	627
Bbv12I	GWGCWC	2 cut(s)	253, 539
BbvI	GCAGC	6 cut(s)	508, 534, 541, 586, 588, 589
BccI	CCATC	3 cut(s)	268, 478, 684
BclI	TGATCA	1 cut(s)	90
BcnI	CCSGG	2 cut(s)	103, 440
BcoDI	GTCTC	3 cut(s)	437, 612, 691
BfaI	CTAG	5 cut(s)	41, 110, 116, 135, 272
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	6 cut(s)	522, 530, 548, 577, 600, 603
BlsI	GCNGC	6 cut(s)	523, 531, 549, 578, 601, 604
Bme1390I	CCNGG	2 cut(s)	103, 440
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	2 cut(s)	431, 630
BmiI	GGNNCC	4 cut(s)	197, 415, 432, 433
BmrFI	CCNGG	2 cut(s)	103, 440
BmsI	GCATC	1 cut(s)	478
BpuMI	CCSGG	2 cut(s)	103, 440
BsaAI	YACGTR	1 cut(s)	627
BsaBI	GATNNNNATC	2 cut(s)	399, 713
BsaJI	CCNNGG	1 cut(s)	77
BsaWI	WCCGGW	1 cut(s)	656
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 423, 445
Bse118I	RCCGGY	4 cut(s)	44, 225, 550, 595
Bse3DI	GCAATG	1 cut(s)	8
Bse8I	GATNNNNATC	2 cut(s)	399, 713
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	2 cut(s)	493, 695
BseJI	GATNNNNATC	2 cut(s)	399, 713
BseLI	CCNNNNNNNGG	3 cut(s)	83, 423, 445
BseMI	GCAATG	1 cut(s)	8
BseMII	CTCAG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	6 cut(s)	508, 534, 541, 586, 588, 589
BsgI	GTGCAG	2 cut(s)	470, 595
BshFI	GGCC	3 cut(s)	39, 259, 631
BshNI	GGYRCC	1 cut(s)	195
BsiHKAI	GWGCWC	2 cut(s)	253, 539
BsiSI	CCGG	8 cut(s)	45, 103, 226, 317, 440, 551, 596, 657
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	3 cut(s)	83, 423, 445
BsmAI	GTCTC	3 cut(s)	437, 612, 691
BsmBI	CGTCTC	3 cut(s)	437, 612, 691
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	3 cut(s)	39, 259, 631
Bsp1286I	GDGCHC	2 cut(s)	253, 539
Bsp143I	GATC	9 cut(s)	90, 358, 400, 413, 459, 492, 503, 643, 666
Bsp19I	CCATGG	1 cut(s)	77
BspACI	CCGC	3 cut(s)	527, 545, 694
BspANI	GGCC	3 cut(s)	39, 259, 631
BspCNI	CTCAG	1 cut(s)	180
BspLI	GGNNCC	4 cut(s)	197, 415, 432, 433
BspPI	GGATC	5 cut(s)	408, 408, 421, 511, 661
BspT107I	GGYRCC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	8
BsrFI	RCCGGY	4 cut(s)	44, 225, 550, 595
BssAI	RCCGGY	4 cut(s)	44, 225, 550, 595
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	9 cut(s)	90, 358, 400, 413, 459, 492, 503, 643, 666
BssT1I	CCWWGG	1 cut(s)	77
Bst4CI	ACNGT	4 cut(s)	248, 448, 573, 702
Bst6I	CTCTTC	1 cut(s)	346
BstBAI	YACGTR	1 cut(s)	627
BstC8I	GCNNGC	3 cut(s)	46, 552, 597
BstDEI	CTNAG	1 cut(s)	167
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	493, 695
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	9 cut(s)	93, 361, 403, 416, 462, 495, 506, 646, 669
BstMAI	GTCTC	3 cut(s)	437, 612, 691
BstMBI	GATC	9 cut(s)	90, 358, 400, 413, 459, 492, 503, 643, 666
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 497, 518, 560, 599, 670
BstSCI	CCNGG	2 cut(s)	101, 438
BstV1I	GCAGC	6 cut(s)	508, 534, 541, 586, 588, 589
BstX2I	RGATCY	2 cut(s)	400, 413
BstYI	RGATCY	2 cut(s)	400, 413
BsuRI	GGCC	3 cut(s)	39, 259, 631
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	493, 695
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	3 cut(s)	27, 175, 724
Cac8I	GCNNGC	3 cut(s)	46, 552, 597
CaiI	CAGNNNCTG	1 cut(s)	723
CfoI	GCGC	1 cut(s)	595
Cfr10I	RCCGGY	4 cut(s)	44, 225, 550, 595
Cfr13I	GGNCC	2 cut(s)	431, 630
CseI	GACGC	2 cut(s)	31, 594
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	2 cut(s)	78, 182
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	9 cut(s)	92, 360, 402, 415, 461, 494, 505, 645, 668
DpnII	GATC	9 cut(s)	90, 358, 400, 413, 459, 492, 503, 643, 666
EaeI	YGGCCR	1 cut(s)	257
Eam1104I	CTCTTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	346
EciI	GGCGGA	1 cut(s)	709
Ecl136II	GAGCTC	1 cut(s)	537
Eco130I	CCWWGG	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	431
Eco53kI	GAGCTC	1 cut(s)	537
Eco72I	CACGTG	1 cut(s)	627
EcoICRI	GAGCTC	1 cut(s)	537
EcoO109I	RGGNCCY	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	539
ErhI	CCWWGG	1 cut(s)	77
Esp3I	CGTCTC	3 cut(s)	437, 612, 691
FaeI	CATG	2 cut(s)	81, 185
FaiI	YATR	5 cut(s)	66, 79, 183, 238, 519
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	2 cut(s)	77, 181
FbaI	TGATCA	1 cut(s)	90
Fnu4HI	GCNGC	6 cut(s)	522, 530, 548, 577, 600, 603
FokI	GGATG	2 cut(s)	500, 702
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	6 cut(s)	522, 530, 548, 577, 600, 603
FspBI	CTAG	5 cut(s)	41, 110, 116, 135, 272
GlaI	GCGC	1 cut(s)	594
GluI	GCNGC	6 cut(s)	522, 530, 548, 577, 600, 603
HaeIII	GGCC	3 cut(s)	39, 259, 631
HapII	CCGG	8 cut(s)	45, 103, 226, 317, 440, 551, 596, 657
HgaI	GACGC	2 cut(s)	31, 594
HhaI	GCGC	1 cut(s)	595
Hin1II	CATG	2 cut(s)	81, 185
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HinfI	GANTC	3 cut(s)	268, 313, 395
HpaII	CCGG	8 cut(s)	45, 103, 226, 317, 440, 551, 596, 657
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	3 cut(s)	130, 173, 622
Hpy188I	TCNGA	7 cut(s)	61, 299, 363, 394, 400, 637, 648
Hpy188III	TCNNGA	2 cut(s)	135, 609
Hpy8I	GTNNAC	3 cut(s)	130, 173, 622
Hpy99I	CGWCG	2 cut(s)	268, 641
HpyAV	CCTTC	2 cut(s)	358, 654
HpyCH4III	ACNGT	4 cut(s)	248, 448, 573, 702
HpyCH4IV	ACGT	1 cut(s)	626
HpyCH4V	TGCA	3 cut(s)	451, 470, 576
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 497, 518, 560, 599, 670
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	626
Hsp92II	CATG	2 cut(s)	81, 185
HspAI	GCGC	1 cut(s)	593
KflI	GGGWCCC	1 cut(s)	431
KroI	GCCGGC	3 cut(s)	44, 550, 595
KroNI	GCCGGC	3 cut(s)	46, 552, 597
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	9 cut(s)	90, 358, 400, 413, 459, 492, 503, 643, 666
LmnI	GCTCC	2 cut(s)	529, 542
Lsp1109I	GCAGC	6 cut(s)	508, 534, 541, 586, 588, 589
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	5 cut(s)	41, 110, 116, 135, 272
MaeII	ACGT	1 cut(s)	626
MaeIII	GTNAC	2 cut(s)	151, 652
MalI	GATC	9 cut(s)	92, 360, 402, 415, 461, 494, 505, 645, 668
MboI	GATC	9 cut(s)	90, 358, 400, 413, 459, 492, 503, 643, 666
MboII	GAAGA	2 cut(s)	338, 363
MflI	RGATCY	2 cut(s)	400, 413
MhlI	GDGCHC	2 cut(s)	253, 539
MlsI	TGGCCA	1 cut(s)	259
MluCI	AATT	3 cut(s)	55, 68, 190
MluNI	TGGCCA	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	4 cut(s)	84, 322, 328, 660
MnlI	CCTC	8 cut(s)	24, 43, 77, 296, 363, 367, 643, 699
Mox20I	TGGCCA	1 cut(s)	259
MroNI	GCCGGC	3 cut(s)	44, 550, 595
MscI	TGGCCA	1 cut(s)	259
MslI	CAYNNNNRTG	1 cut(s)	246
Msp20I	TGGCCA	1 cut(s)	259
MspA1I	CMGCKG	1 cut(s)	547
MspI	CCGG	8 cut(s)	45, 103, 226, 317, 440, 551, 596, 657
MspR9I	CCNGG	2 cut(s)	103, 440
MwoI	GCNNNNNNNGC	6 cut(s)	45, 497, 518, 560, 599, 670
NaeI	GCCGGC	3 cut(s)	46, 552, 597
NciI	CCSGG	2 cut(s)	103, 440
NcoI	CCATGG	1 cut(s)	77
NdeII	GATC	9 cut(s)	90, 358, 400, 413, 459, 492, 503, 643, 666
NgoMIV	GCCGGC	3 cut(s)	44, 550, 595
NlaIII	CATG	2 cut(s)	81, 185
NlaIV	GGNNCC	4 cut(s)	197, 415, 432, 433
NmeAIII	GCCGAG	1 cut(s)	558
NmuCI	GTSAC	1 cut(s)	652
OliI	CACNNNNGTG	1 cut(s)	246
PdiI	GCCGGC	3 cut(s)	46, 552, 597
PfeI	GAWTC	2 cut(s)	313, 395
PkrI	GCNGC	6 cut(s)	523, 531, 549, 578, 601, 604
PleI	GAGTC	1 cut(s)	276
PmaCI	CACGTG	1 cut(s)	627
PmlI	CACGTG	1 cut(s)	627
PpsI	GAGTC	1 cut(s)	276
Ppu21I	YACGTR	1 cut(s)	627
PpuMI	RGGWCCY	1 cut(s)	431
Psp124BI	GAGCTC	1 cut(s)	539
Psp5II	RGGWCCY	1 cut(s)	431
PspCI	CACGTG	1 cut(s)	627
PspN4I	GGNNCC	4 cut(s)	197, 415, 432, 433
PspPI	GGNCC	2 cut(s)	431, 630
PspPPI	RGGWCCY	1 cut(s)	431
PstNI	CAGNNNCTG	1 cut(s)	723
PsuI	RGATCY	2 cut(s)	400, 413
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
RseI	CAYNNNNRTG	1 cut(s)	246
SacI	GAGCTC	1 cut(s)	539
SatI	GCNGC	6 cut(s)	522, 530, 548, 577, 600, 603
Sau3AI	GATC	9 cut(s)	90, 358, 400, 413, 459, 492, 503, 643, 666
Sau96I	GGNCC	2 cut(s)	431, 630
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	2 cut(s)	103, 440
SduI	GDGCHC	2 cut(s)	253, 539
SfaNI	GCATC	1 cut(s)	478
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	3 cut(s)	55, 68, 190
SsiI	CCGC	3 cut(s)	527, 545, 694
SspMI	CTAG	5 cut(s)	41, 110, 116, 135, 272
SstI	GAGCTC	1 cut(s)	539
StyD4I	CCNGG	2 cut(s)	101, 438
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	4 cut(s)	248, 448, 573, 702
TaiI	ACGT	1 cut(s)	629
TaqI	TCGA	2 cut(s)	263, 610
TasI	AATT	3 cut(s)	55, 68, 190
TfiI	GAWTC	2 cut(s)	313, 395
TscAI	CASTG	3 cut(s)	34, 175, 724
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	6 cut(s)	521, 529, 547, 576, 599, 602
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	2 cut(s)	17, 81
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	3 cut(s)	34, 175, 724
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	2 cut(s)	55, 68
XbaI	TCTAGA	1 cut(s)	134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XspI	CTAG	5 cut(s)	41, 110, 116, 135, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.