Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Forward (+)

775712 .. 776335

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1012300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTGACGGCGATTCTCCGATCGCAGGATTGCCTTCGAGGTCGGTTCCGCCACGAAGCTCTAACCCTAACCCTCTCCCCCCGCTCCGGATCACGACGGAGCCCCAATTTCTCTAATCCTAACCCTAATTCCGCCCCCAACCATGGCCCCGCCGCCAATGTTCATCAATCTCGCCGCCGGAAAAGGAGTCCGATAGCGGTTCAGTCCAATCAGCACGACCGACCTCGCGATCGGTGCGCTGATCGCTCCGTTGTCGCGAAGGCGCCGGTTAAAAACCTTGTGACGGGACAGGTCAAGATCCTGAGGCGCGGTGAGGTTTTGAACCCGGAGAAGGGCAACCGAGGGCTACGAGTTGTTGCCAGCGACGATTGCAAGCCGAAGGCGAACAAGGAAAACGATCCGGATCTGGTTTTGGGATCCACGGACCGTTTGGGACCCGACCCGGAGACCGTGCAGAAGCAGATTAAAGCTGCCGAGTTCAAGGTCATGGACGCGATTTATGCCGGATCGAGCGCTTTCTACGCGTCTCCGCCTCCGAGCTCGGTGCCGCTGCCTGCTTTTTTGGGAAGGAACGGCACCGCAACGAGCGATCTCCGCCGGCTGCTGCGGCTCGATTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

208

Amino Acids

22.66

Weight (kDa)

10.71

Isoelectric Point (pI)

69.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	262, 544, 575
AccBSI	CCGCTC	1 cut(s)	84
AccII	CGCG	5 cut(s)	228, 257, 309, 494, 524
AccIII	TCCGGA	2 cut(s)	86, 400
AclWI	GGATC	7 cut(s)	97, 292, 392, 411, 411, 424, 514
AcyI	GRCGYC	1 cut(s)	263
AfeI	AGCGCT	1 cut(s)	514
AfiI	CCNNNNNNNGG	6 cut(s)	25, 86, 143, 283, 331, 332
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	2 cut(s)	322, 481
AluBI	AGCT	3 cut(s)	59, 470, 540
AluI	AGCT	3 cut(s)	59, 470, 540
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	2 cut(s)	440, 531
AlwI	GGATC	7 cut(s)	97, 292, 392, 411, 411, 424, 514
Aor13HI	TCCGGA	2 cut(s)	86, 400
Aor51HI	AGCGCT	1 cut(s)	514
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	4 cut(s)	470, 550, 601, 604
AspLEI	GCGC	4 cut(s)	239, 265, 309, 515
AspS9I	GGNCC	3 cut(s)	146, 424, 434
AsuC2I	CCSGG	2 cut(s)	326, 443
AsuHPI	GGTGA	2 cut(s)	16, 323
AvaII	GGWCC	2 cut(s)	424, 434
AxyI	CCTNAGG	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	416
BanI	GGYRCC	3 cut(s)	262, 544, 575
BanII	GRGCYC	2 cut(s)	104, 542
Bbv12I	GWGCWC	1 cut(s)	542
BbvI	GCAGC	4 cut(s)	457, 537, 588, 591
BceAI	ACGGC	2 cut(s)	24, 589
BcgI	CGANNNNNNTGC	2 cut(s)	526, 560
BcnI	CCSGG	2 cut(s)	326, 443
BcoDI	GTCTC	2 cut(s)	440, 531
BfoI	RGCGCY	2 cut(s)	266, 516
BisI	GCNGC	8 cut(s)	153, 175, 471, 548, 551, 602, 605, 608
BlsI	GCNGC	8 cut(s)	154, 176, 472, 549, 552, 603, 606, 609
Bme1390I	CCNGG	2 cut(s)	326, 443
Bme18I	GGWCC	2 cut(s)	424, 434
BmgT120I	GGNCC	3 cut(s)	146, 424, 434
BmiI	GGNNCC	9 cut(s)	47, 101, 148, 264, 418, 435, 436, 546, 577
BmrFI	CCNGG	2 cut(s)	326, 443
BpuMI	CCSGG	2 cut(s)	326, 443
BsaBI	GATNNNNATC	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	3 cut(s)	142, 340, 420
BsaWI	WCCGGW	2 cut(s)	86, 400
Bsc4I	CCNNNNNNNGG	6 cut(s)	25, 86, 143, 283, 331, 332
Bse118I	RCCGGY	2 cut(s)	265, 597
Bse21I	CCTNAGG	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	402
BseAI	TCCGGA	2 cut(s)	86, 400
BseDI	CCNNGG	3 cut(s)	142, 340, 420
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	6 cut(s)	25, 86, 143, 283, 331, 332
BseMII	CTCAG	1 cut(s)	293
BseXI	GCAGC	4 cut(s)	457, 537, 588, 591
BsgI	GTGCAG	1 cut(s)	473
Bsh1236I	CGCG	5 cut(s)	228, 257, 309, 494, 524
Bsh1285I	CGRYCG	3 cut(s)	23, 220, 232
BshFI	GGCC	1 cut(s)	147
BshNI	GGYRCC	3 cut(s)	262, 544, 575
BsiEI	CGRYCG	3 cut(s)	23, 220, 232
BsiHKAI	GWGCWC	1 cut(s)	542
BsiSI	CCGG	8 cut(s)	87, 178, 266, 326, 401, 443, 504, 598
BslFI	GGGAC	2 cut(s)	300, 447
BslI	CCNNNNNNNGG	6 cut(s)	25, 86, 143, 283, 331, 332
BsmAI	GTCTC	2 cut(s)	440, 531
BsmBI	CGTCTC	1 cut(s)	531
BsmFI	GGGAC	2 cut(s)	300, 447
BsnI	GGCC	1 cut(s)	147
Bso31I	GGTCTC	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	104, 542
Bsp13I	TCCGGA	2 cut(s)	86, 400
Bsp19I	CCATGG	1 cut(s)	142
Bsp68I	TCGCGA	2 cut(s)	228, 257
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	1 cut(s)	294
BspEI	TCCGGA	2 cut(s)	86, 400
BspFNI	CGCG	5 cut(s)	228, 257, 309, 494, 524
BspLI	GGNNCC	9 cut(s)	47, 101, 148, 264, 418, 435, 436, 546, 577
BspPI	GGATC	7 cut(s)	97, 292, 392, 411, 411, 424, 514
BspT107I	GGYRCC	3 cut(s)	262, 544, 575
BspTNI	GGTCTC	1 cut(s)	440
BsrBI	CCGCTC	1 cut(s)	84
BsrFI	RCCGGY	2 cut(s)	265, 597
BssAI	RCCGGY	2 cut(s)	265, 597
BssECI	CCNNGG	3 cut(s)	142, 340, 420
BssNI	GRCGYC	1 cut(s)	263
BssT1I	CCWWGG	1 cut(s)	142
Bst4CI	ACNGT	2 cut(s)	428, 451
BstACI	GRCGYC	1 cut(s)	263
BstC8I	GCNNGC	4 cut(s)	361, 374, 555, 599
BstDEI	CTNAG	1 cut(s)	302
BstDSI	CCRYGG	2 cut(s)	142, 420
BstFNI	CGCG	5 cut(s)	228, 257, 309, 494, 524
BstH2I	RGCGCY	2 cut(s)	266, 516
BstHHI	GCGC	4 cut(s)	239, 265, 309, 515
BstMAI	GTCTC	2 cut(s)	440, 531
BstMCI	CGRYCG	3 cut(s)	23, 220, 232
BstMWI	GCNNNNNNNGC	7 cut(s)	234, 243, 369, 500, 521, 594, 607
BstSCI	CCNGG	2 cut(s)	324, 441
BstUI	CGCG	5 cut(s)	228, 257, 309, 494, 524
BstV1I	GCAGC	4 cut(s)	457, 537, 588, 591
BstX2I	RGATCY	3 cut(s)	297, 403, 416
BstYI	RGATCY	3 cut(s)	297, 403, 416
Bsu36I	CCTNAGG	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	147
BtgI	CCRYGG	2 cut(s)	142, 420
BtuMI	TCGCGA	2 cut(s)	228, 257
Cac8I	GCNNGC	4 cut(s)	361, 374, 555, 599
CfoI	GCGC	4 cut(s)	239, 265, 309, 515
Cfr10I	RCCGGY	2 cut(s)	265, 597
Cfr13I	GGNCC	3 cut(s)	146, 424, 434
CpoI	CGGWCCG	1 cut(s)	424
CseI	GACGC	2 cut(s)	500, 513
CspI	CGGWCCG	1 cut(s)	424
CviAII	CATG	2 cut(s)	143, 487
CviJI	RGCY	9 cut(s)	59, 102, 147, 346, 376, 470, 540, 601, 610
CviKI_1	RGCY	9 cut(s)	59, 102, 147, 346, 376, 470, 540, 601, 610
DdeI	CTNAG	1 cut(s)	302
DinI	GGCGCC	1 cut(s)	264
EciI	GGCGGA	4 cut(s)	38, 121, 519, 584
Ecl136II	GAGCTC	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	142
Eco24I	GRGCYC	2 cut(s)	104, 542
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	2 cut(s)	424, 434
Eco47III	AGCGCT	1 cut(s)	514
Eco53kI	GAGCTC	1 cut(s)	540
Eco81I	CCTNAGG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	540
EcoO109I	RGGNCCY	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	142
EcoT38I	GRGCYC	2 cut(s)	104, 542
EgeI	GGCGCC	1 cut(s)	264
EheI	GGCGCC	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	142
Esp3I	CGTCTC	1 cut(s)	531
FaeI	CATG	2 cut(s)	146, 490
FaiI	YATR	3 cut(s)	144, 488, 501
FaqI	GGGAC	2 cut(s)	300, 447
FatI	CATG	2 cut(s)	142, 486
FauI	CCCGC	2 cut(s)	89, 157
Fnu4HI	GCNGC	8 cut(s)	153, 175, 471, 548, 551, 602, 605, 608
FriOI	GRGCYC	2 cut(s)	104, 542
Fsp4HI	GCNGC	8 cut(s)	153, 175, 471, 548, 551, 602, 605, 608
GlaI	GCGC	4 cut(s)	238, 264, 308, 514
GluI	GCNGC	8 cut(s)	153, 175, 471, 548, 551, 602, 605, 608
HaeII	RGCGCY	2 cut(s)	266, 516
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	8 cut(s)	87, 178, 266, 326, 401, 443, 504, 598
HgaI	GACGC	2 cut(s)	500, 513
HhaI	GCGC	4 cut(s)	239, 265, 309, 515
Hin1I	GRCGYC	1 cut(s)	263
Hin1II	CATG	2 cut(s)	146, 490
Hin6I	GCGC	4 cut(s)	237, 263, 307, 513
HinP1I	GCGC	4 cut(s)	237, 263, 307, 513
HinfI	GANTC	2 cut(s)	13, 187
HpaII	CCGG	8 cut(s)	87, 178, 266, 326, 401, 443, 504, 598
HphI	GGTGA	2 cut(s)	16, 323
Hpy188I	TCNGA	3 cut(s)	20, 192, 537
Hpy188III	TCNNGA	7 cut(s)	87, 93, 227, 256, 295, 301, 401
Hpy99I	CGWCG	2 cut(s)	99, 368
HpyAV	CCTTC	5 cut(s)	44, 253, 325, 373, 561
HpyCH4III	ACNGT	2 cut(s)	428, 451
HpyCH4V	TGCA	2 cut(s)	372, 454
HpyF10VI	GCNNNNNNNGC	7 cut(s)	234, 243, 369, 500, 521, 594, 607
HpyF3I	CTNAG	1 cut(s)	302
Hsp92I	GRCGYC	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	146, 490
HspAI	GCGC	4 cut(s)	237, 263, 307, 513
KasI	GGCGCC	1 cut(s)	262
KflI	GGGWCCC	1 cut(s)	434
Kpn2I	TCCGGA	2 cut(s)	86, 400
KroI	GCCGGC	1 cut(s)	597
KroNI	GCCGGC	1 cut(s)	599
LmnI	GCTCC	3 cut(s)	89, 99, 251
Lsp1109I	GCAGC	4 cut(s)	457, 537, 588, 591
MaeIII	GTNAC	2 cut(s)	4, 280
MbiI	CCGCTC	1 cut(s)	84
MflI	RGATCY	3 cut(s)	297, 403, 416
MhlI	GDGCHC	2 cut(s)	104, 542
MluCI	AATT	2 cut(s)	106, 127
MluI	ACGCGT	1 cut(s)	522
Mly113I	GGCGCC	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	7 cut(s)	32, 83, 234, 297, 307, 335, 543
MroI	TCCGGA	2 cut(s)	86, 400
MroNI	GCCGGC	1 cut(s)	597
MseI	TTAA	2 cut(s)	270, 465
MspA1I	CMGCKG	1 cut(s)	550
MspI	CCGG	8 cut(s)	87, 178, 266, 326, 401, 443, 504, 598
MspR9I	CCNGG	2 cut(s)	326, 443
MvnI	CGCG	5 cut(s)	228, 257, 309, 494, 524
MwoI	GCNNNNNNNGC	7 cut(s)	234, 243, 369, 500, 521, 594, 607
NaeI	GCCGGC	1 cut(s)	599
NarI	GGCGCC	1 cut(s)	263
NciI	CCSGG	2 cut(s)	326, 443
NcoI	CCATGG	1 cut(s)	142
NgoMIV	GCCGGC	1 cut(s)	597
NlaIII	CATG	2 cut(s)	146, 490
NlaIV	GGNNCC	9 cut(s)	47, 101, 148, 264, 418, 435, 436, 546, 577
NmeAIII	GCCGAG	1 cut(s)	499
NmuCI	GTSAC	2 cut(s)	4, 280
NruI	TCGCGA	2 cut(s)	228, 257
PdiI	GCCGGC	1 cut(s)	599
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	8 cut(s)	154, 176, 472, 549, 552, 603, 606, 609
Ple19I	CGATCG	2 cut(s)	23, 232
PleI	GAGTC	1 cut(s)	195
PluTI	GGCGCC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	195
PpuMI	RGGWCCY	1 cut(s)	434
Psp124BI	GAGCTC	1 cut(s)	542
Psp5II	RGGWCCY	1 cut(s)	434
PspN4I	GGNNCC	9 cut(s)	47, 101, 148, 264, 418, 435, 436, 546, 577
PspPI	GGNCC	3 cut(s)	146, 424, 434
PspPPI	RGGWCCY	1 cut(s)	434
PsuI	RGATCY	3 cut(s)	297, 403, 416
PvuI	CGATCG	2 cut(s)	23, 232
RruI	TCGCGA	2 cut(s)	228, 257
Rsr2I	CGGWCCG	1 cut(s)	424
RsrII	CGGWCCG	1 cut(s)	424
SacI	GAGCTC	1 cut(s)	542
SaqAI	TTAA	2 cut(s)	270, 465
SatI	GCNGC	8 cut(s)	153, 175, 471, 548, 551, 602, 605, 608
Sau96I	GGNCC	3 cut(s)	146, 424, 434
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	2 cut(s)	326, 443
SduI	GDGCHC	2 cut(s)	104, 542
SetI	ASST	9 cut(s)	43, 61, 226, 279, 294, 318, 472, 486, 542
SfoI	GGCGCC	1 cut(s)	264
SinI	GGWCC	2 cut(s)	424, 434
Sse9I	AATT	2 cut(s)	106, 127
SspDI	GGCGCC	1 cut(s)	262
SstI	GAGCTC	1 cut(s)	542
StyD4I	CCNGG	2 cut(s)	324, 441
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	2 cut(s)	428, 451
TaqI	TCGA	3 cut(s)	37, 509, 612
TaqII	GACCGA	1 cut(s)	234
TasI	AATT	2 cut(s)	106, 127
TauI	GCSGC	4 cut(s)	155, 177, 550, 610
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	2 cut(s)	270, 465
Tru9I	TTAA	2 cut(s)	270, 465
TseFI	GTSAC	2 cut(s)	4, 280
TseI	GCWGC	4 cut(s)	470, 550, 601, 604
Tsp45I	GTSAC	2 cut(s)	4, 280
TspDTI	ATGAA	1 cut(s)	152
TspGWI	ACGGA	3 cut(s)	112, 238, 437
VpaK11BI	GGWCC	2 cut(s)	424, 434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.