Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Reverse (-)

72162070 .. 72168412

Gene Structure 6343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG451900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGATCCTTACAAGGCCGACGCCGAGACTGCTCTCTCCCTCACTTCACCTGCACCGCGAGACTGCTCTCTCTCTCTTCACATCACGCTGTGGTTCATTGGGTTTGTGTTTGGTGCTAAGGGGACTGTGATTCAGAGCTCTAGCCCTAACCTTGACCCTACGCTCCGGCGCGGCGAGGCTTTGAATCCGGCAACGGAAGATGAGAGAGAGGGCGGAGTTGGAAGAGATGATCGGAAGGCGAGGGAGGAGAGCGTGGAGTGTTCGGATTCAGATCTGGTGTTGGGATCCACAGACAGGTTGGGACCCGACCCGGAGACGGTGCAGAAGCAGATCAAGGTTGCAGAGTTCAAGGTGATGGATGCGATCTACGCTGGATCGGGGGCTTATTATGCTTCTCCGCCGCCGAGCTCCATTCCGCTGCCGGCTTTTTTGGCTAAGTACGGTGCAGCGACCAGCAATCTGCGCCTGCTGCTGCGTCTCGATTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

163

Amino Acids

17.51

Weight (kDa)

4.8

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	58
Acc36I	ACCTGC	1 cut(s)	58
AccII	CGCG	2 cut(s)	58, 171
AciI	CCGC	6 cut(s)	56, 171, 213, 398, 401, 416
AclWI	GGATC	4 cut(s)	12, 279, 292, 382
AcyI	GRCGYC	1 cut(s)	21
AdeI	CACNNNGTG	1 cut(s)	90
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	2 cut(s)	294, 316
AgsI	TTSAA	2 cut(s)	184, 349
AluBI	AGCT	2 cut(s)	138, 408
AluI	AGCT	2 cut(s)	138, 408
Alw21I	GWGCWC	2 cut(s)	140, 410
Alw26I	GTCTC	4 cut(s)	20, 54, 308, 482
AlwI	GGATC	4 cut(s)	12, 279, 292, 382
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	4 cut(s)	418, 446, 469, 472
AspLEI	GCGC	2 cut(s)	171, 465
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	39, 364
AvaII	GGWCC	1 cut(s)	302
BamHI	GGATCC	2 cut(s)	4, 284
BanII	GRGCYC	2 cut(s)	140, 410
Bbv12I	GWGCWC	2 cut(s)	140, 410
BbvI	GCAGC	4 cut(s)	405, 456, 458, 459
BccI	CCATC	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	4 cut(s)	20, 54, 308, 482
BfaI	CTAG	1 cut(s)	141
BfuAI	ACCTGC	1 cut(s)	58
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	6 cut(s)	172, 401, 419, 447, 470, 473
BlsI	GCNGC	6 cut(s)	173, 402, 420, 448, 471, 474
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	4 cut(s)	6, 286, 303, 304
BmrFI	CCNGG	1 cut(s)	311
BmsI	GCATC	1 cut(s)	349
Bpu10I	CCTNAGC	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	311
BsaBI	GATNNNNATC	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 316
Bse118I	RCCGGY	1 cut(s)	421
Bse8I	GATNNNNATC	1 cut(s)	270
BseGI	GGATG	1 cut(s)	364
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	294, 316
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	4 cut(s)	405, 456, 458, 459
BsgI	GTGCAG	3 cut(s)	36, 341, 465
Bsh1236I	CGCG	2 cut(s)	58, 171
BshFI	GGCC	1 cut(s)	17
BsiHKAI	GWGCWC	2 cut(s)	140, 410
BsiSI	CCGG	4 cut(s)	166, 188, 311, 422
BslFI	GGGAC	2 cut(s)	136, 315
BslI	CCNNNNNNNGG	2 cut(s)	294, 316
BsmAI	GTCTC	4 cut(s)	20, 54, 308, 482
BsmBI	CGTCTC	2 cut(s)	308, 482
BsmFI	GGGAC	2 cut(s)	136, 315
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	140, 410
Bsp143I	GATC	7 cut(s)	4, 229, 271, 284, 330, 363, 374
BspACI	CCGC	6 cut(s)	56, 171, 213, 398, 401, 416
BspANI	GGCC	1 cut(s)	17
BspFNI	CGCG	2 cut(s)	58, 171
BspLI	GGNNCC	4 cut(s)	6, 286, 303, 304
BspMI	ACCTGC	1 cut(s)	58
BspPI	GGATC	4 cut(s)	12, 279, 292, 382
BsrFI	RCCGGY	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	421
BssMI	GATC	7 cut(s)	4, 229, 271, 284, 330, 363, 374
BssNI	GRCGYC	1 cut(s)	21
Bst4CI	ACNGT	3 cut(s)	127, 319, 443
Bst6I	CTCTTC	2 cut(s)	81, 217
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	423, 467
BstDEI	CTNAG	2 cut(s)	117, 435
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	2 cut(s)	58, 171
BstHHI	GCGC	2 cut(s)	171, 465
BstKTI	GATC	7 cut(s)	7, 232, 274, 287, 333, 366, 377
BstMAI	GTCTC	4 cut(s)	20, 54, 308, 482
BstMBI	GATC	7 cut(s)	4, 229, 271, 284, 330, 363, 374
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 368, 389, 431, 462, 469
BstSCI	CCNGG	1 cut(s)	309
BstUI	CGCG	2 cut(s)	58, 171
BstV1I	GCAGC	4 cut(s)	405, 456, 458, 459
BstX2I	RGATCY	3 cut(s)	4, 271, 284
BstYI	RGATCY	3 cut(s)	4, 271, 284
BsuRI	GGCC	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	364
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	2 cut(s)	423, 467
CfoI	GCGC	2 cut(s)	171, 465
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	302
CseI	GACGC	2 cut(s)	29, 464
Csp6I	GTAC	1 cut(s)	439
CviJI	RGCY	8 cut(s)	17, 138, 144, 179, 383, 408, 425, 434
CviKI_1	RGCY	8 cut(s)	17, 138, 144, 179, 383, 408, 425, 434
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	2 cut(s)	117, 435
DpnI	GATC	7 cut(s)	6, 231, 273, 286, 332, 365, 376
DpnII	GATC	7 cut(s)	4, 229, 271, 284, 330, 363, 374
DraIII	CACNNNGTG	1 cut(s)	90
Eam1104I	CTCTTC	2 cut(s)	81, 217
EarI	CTCTTC	2 cut(s)	81, 217
EciI	GGCGGA	2 cut(s)	228, 387
Ecl136II	GAGCTC	2 cut(s)	138, 408
Eco24I	GRGCYC	2 cut(s)	140, 410
Eco47I	GGWCC	1 cut(s)	302
Eco53kI	GAGCTC	2 cut(s)	138, 408
EcoICRI	GAGCTC	2 cut(s)	138, 408
EcoO109I	RGGNCCY	1 cut(s)	302
EcoT38I	GRGCYC	2 cut(s)	140, 410
Esp3I	CGTCTC	2 cut(s)	308, 482
FaiI	YATR	1 cut(s)	390
FaqI	GGGAC	2 cut(s)	136, 315
Fnu4HI	GCNGC	6 cut(s)	172, 401, 419, 447, 470, 473
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	2 cut(s)	140, 410
Fsp4HI	GCNGC	6 cut(s)	172, 401, 419, 447, 470, 473
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	2 cut(s)	170, 464
GluI	GCNGC	6 cut(s)	172, 401, 419, 447, 470, 473
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	4 cut(s)	166, 188, 311, 422
HgaI	GACGC	2 cut(s)	29, 464
HhaI	GCGC	2 cut(s)	171, 465
Hin1I	GRCGYC	1 cut(s)	21
Hin6I	GCGC	2 cut(s)	169, 463
HinP1I	GCGC	2 cut(s)	169, 463
HinfI	GANTC	3 cut(s)	130, 184, 266
HpaII	CCGG	4 cut(s)	166, 188, 311, 422
HphI	GGTGA	2 cut(s)	39, 364
Hpy188I	TCNGA	4 cut(s)	135, 234, 265, 271
Hpy188III	TCNNGA	1 cut(s)	479
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	3 cut(s)	127, 319, 443
HpyCH4V	TGCA	4 cut(s)	53, 322, 341, 446
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 368, 389, 431, 462, 469
HpyF3I	CTNAG	2 cut(s)	117, 435
Hsp92I	GRCGYC	1 cut(s)	21
HspAI	GCGC	2 cut(s)	169, 463
KflI	GGGWCCC	1 cut(s)	302
KroI	GCCGGC	1 cut(s)	421
KroNI	GCCGGC	1 cut(s)	423
Kzo9I	GATC	7 cut(s)	4, 229, 271, 284, 330, 363, 374
LmnI	GCTCC	2 cut(s)	168, 413
Lsp1109I	GCAGC	4 cut(s)	405, 456, 458, 459
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	141
MalI	GATC	7 cut(s)	6, 231, 273, 286, 332, 365, 376
MboI	GATC	7 cut(s)	4, 229, 271, 284, 330, 363, 374
MboII	GAAGA	3 cut(s)	68, 209, 234
MflI	RGATCY	3 cut(s)	4, 271, 284
MhlI	GDGCHC	2 cut(s)	140, 410
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	5 cut(s)	50, 169, 202, 234, 238
MroNI	GCCGGC	1 cut(s)	421
MspA1I	CMGCKG	1 cut(s)	418
MspI	CCGG	4 cut(s)	166, 188, 311, 422
MspR9I	CCNGG	1 cut(s)	311
MvnI	CGCG	2 cut(s)	58, 171
MwoI	GCNNNNNNNGC	6 cut(s)	29, 368, 389, 431, 462, 469
NaeI	GCCGGC	1 cut(s)	423
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	7 cut(s)	4, 229, 271, 284, 330, 363, 374
NgoMIV	GCCGGC	1 cut(s)	421
NlaIV	GGNNCC	4 cut(s)	6, 286, 303, 304
NmeAIII	GCCGAG	2 cut(s)	49, 429
PaqCI	CACCTGC	1 cut(s)	58
PdiI	GCCGGC	1 cut(s)	423
PfeI	GAWTC	3 cut(s)	130, 184, 266
PkrI	GCNGC	6 cut(s)	173, 402, 420, 448, 471, 474
PpuMI	RGGWCCY	1 cut(s)	302
Psp124BI	GAGCTC	2 cut(s)	140, 410
Psp5II	RGGWCCY	1 cut(s)	302
PspN4I	GGNNCC	4 cut(s)	6, 286, 303, 304
PspPI	GGNCC	1 cut(s)	302
PspPPI	RGGWCCY	1 cut(s)	302
PsuI	RGATCY	3 cut(s)	4, 271, 284
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SacI	GAGCTC	2 cut(s)	140, 410
SatI	GCNGC	6 cut(s)	172, 401, 419, 447, 470, 473
Sau3AI	GATC	7 cut(s)	4, 229, 271, 284, 330, 363, 374
Sau96I	GGNCC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	2 cut(s)	140, 410
SetI	ASST	7 cut(s)	52, 140, 153, 299, 339, 354, 410
SfaNI	GCATC	1 cut(s)	349
SinI	GGWCC	1 cut(s)	302
SsiI	CCGC	6 cut(s)	56, 171, 213, 398, 401, 416
SspMI	CTAG	1 cut(s)	141
SstI	GAGCTC	2 cut(s)	140, 410
StyD4I	CCNGG	1 cut(s)	309
TaaI	ACNGT	3 cut(s)	127, 319, 443
TaqI	TCGA	1 cut(s)	480
TauI	GCSGC	2 cut(s)	174, 403
TfiI	GAWTC	3 cut(s)	130, 184, 266
TseI	GCWGC	4 cut(s)	418, 446, 469, 472
TspDTI	ATGAA	1 cut(s)	85
TspGWI	ACGGA	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.