Rh5DG441500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003311
Physical Location & Seq
Reverse (-)
70767463 .. 70769233
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG441500.1

Sequence Viewer

Length: 339 bp
ATGAAGCCATTGCCTCCAATGACGCACACTGCCTCTGGCCTAGCCGGCCTTAGAAATTCCGACTATGAATTTGAACCATGGAGAGGCTTGATCACTCTCTCCCGGCAACTAGCTCTAGCAGTCCAAGTGAACTCTAGAGAAAGGTTGAGACCCGACCCGGAGACGGTGCAGAAGCAGATCAAGGTTGCAGAGTTCAATGTGATGGATGAGATCTACGTTGGATCGGGGGCTTATTATGCTTCTCCGCCGCCGAGCTCCATTCCGCTGCAGGCTTTTTTGGCTAAGTACGGTGCAGTGACCAGCAATCTGCGCCGGCTGCTGCGTCTCGATTTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

112

Amino Acids

12.5

Weight (kDa)

9.45

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 245, 248, 263
AclWI GGATC 1 cut(s) 229
AcsI RAATTY 2 cut(s) 55, 68
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 2 cut(s) 83, 163
AgsI TTSAA 2 cut(s) 74, 196
AluBI AGCT 2 cut(s) 113, 255
AluI AGCT 2 cut(s) 113, 255
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 3 cut(s) 142, 155, 329
AlwI GGATC 1 cut(s) 229
AoxI GGCC 2 cut(s) 37, 46
ApeKI GCWGC 3 cut(s) 265, 316, 319
ApoI RAATTY 2 cut(s) 55, 68
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AspLEI GCGC 1 cut(s) 312
AsuC2I CCSGG 2 cut(s) 103, 158
BanII GRGCYC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 257
BbvI GCAGC 3 cut(s) 252, 303, 306
BccI CCATC 1 cut(s) 196
BclI TGATCA 1 cut(s) 90
BcnI CCSGG 2 cut(s) 103, 158
BcoDI GTCTC 3 cut(s) 142, 155, 329
BfaI CTAG 4 cut(s) 41, 110, 116, 135
BfmI CTRYAG 1 cut(s) 266
BglI GCCNNNNNGGC 1 cut(s) 45
BglII AGATCT 1 cut(s) 210
BisI GCNGC 4 cut(s) 248, 266, 317, 320
BlsI GCNGC 4 cut(s) 249, 267, 318, 321
Bme1390I CCNGG 2 cut(s) 103, 158
BmrFI CCNGG 2 cut(s) 103, 158
BpuMI CCSGG 2 cut(s) 103, 158
BsaI GGTCTC 1 cut(s) 142
BsaJI CCNNGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 163
Bse118I RCCGGY 2 cut(s) 44, 312
Bse3DI GCAATG 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 83, 163
BseMI GCAATG 1 cut(s) 8
BseXI GCAGC 3 cut(s) 252, 303, 306
BsgI GTGCAG 2 cut(s) 188, 312
BshFI GGCC 2 cut(s) 39, 48
BsiHKAI GWGCWC 1 cut(s) 257
BsiSI CCGG 4 cut(s) 45, 103, 158, 313
BslI CCNNNNNNNGG 2 cut(s) 83, 163
BsmAI GTCTC 3 cut(s) 142, 155, 329
BsmBI CGTCTC 2 cut(s) 155, 329
BsnI GGCC 2 cut(s) 39, 48
Bso31I GGTCTC 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 4 cut(s) 90, 177, 210, 221
Bsp19I CCATGG 1 cut(s) 77
BspACI CCGC 3 cut(s) 245, 248, 263
BspANI GGCC 2 cut(s) 39, 48
BspMAI CTGCAG 1 cut(s) 270
BspPI GGATC 1 cut(s) 229
BspTNI GGTCTC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 8
BsrFI RCCGGY 2 cut(s) 44, 312
BssAI RCCGGY 2 cut(s) 44, 312
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 4 cut(s) 90, 177, 210, 221
BssT1I CCWWGG 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 166, 290
BstC8I GCNNGC 3 cut(s) 46, 270, 314
BstDEI CTNAG 2 cut(s) 50, 282
BstDSI CCRYGG 1 cut(s) 77
BstF5I GGATG 1 cut(s) 211
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 4 cut(s) 93, 180, 213, 224
BstMAI GTCTC 3 cut(s) 142, 155, 329
BstMBI GATC 4 cut(s) 90, 177, 210, 221
BstMWI GCNNNNNNNGC 5 cut(s) 45, 236, 278, 309, 316
BstSCI CCNGG 2 cut(s) 101, 156
BstSFI CTRYAG 1 cut(s) 266
BstV1I GCAGC 3 cut(s) 252, 303, 306
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
BsuRI GGCC 2 cut(s) 39, 48
BtgI CCRYGG 1 cut(s) 77
BtsCI GGATG 1 cut(s) 211
BtsI GCAGTG 2 cut(s) 27, 300
BtsIMutI CAGTG 2 cut(s) 27, 300
Cac8I GCNNGC 3 cut(s) 46, 270, 314
CfoI GCGC 1 cut(s) 312
Cfr10I RCCGGY 2 cut(s) 44, 312
CseI GACGC 2 cut(s) 31, 311
Csp6I GTAC 1 cut(s) 286
CviAII CATG 1 cut(s) 78
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 2 cut(s) 50, 282
DpnI GATC 4 cut(s) 92, 179, 212, 223
DpnII GATC 4 cut(s) 90, 177, 210, 221
EciI GGCGGA 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 257
Eco31I GGTCTC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 255
EcoT14I CCWWGG 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 257
ErhI CCWWGG 1 cut(s) 77
Esp3I CGTCTC 2 cut(s) 155, 329
FaeI CATG 1 cut(s) 81
FaiI YATR 3 cut(s) 66, 79, 237
FatI CATG 1 cut(s) 77
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 4 cut(s) 248, 266, 317, 320
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 4 cut(s) 248, 266, 317, 320
FspBI CTAG 4 cut(s) 41, 110, 116, 135
GlaI GCGC 1 cut(s) 311
GluI GCNGC 4 cut(s) 248, 266, 317, 320
HaeIII GGCC 2 cut(s) 39, 48
HapII CCGG 4 cut(s) 45, 103, 158, 313
HgaI GACGC 2 cut(s) 31, 311
HhaI GCGC 1 cut(s) 312
Hin1II CATG 1 cut(s) 81
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HpaII CCGG 4 cut(s) 45, 103, 158, 313
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 135, 326
Hpy8I GTNNAC 1 cut(s) 130
HpyCH4III ACNGT 2 cut(s) 166, 290
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 4 cut(s) 169, 188, 268, 293
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 236, 278, 309, 316
HpyF3I CTNAG 2 cut(s) 50, 282
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 1 cut(s) 81
HspAI GCGC 1 cut(s) 310
KroI GCCGGC 2 cut(s) 44, 312
KroNI GCCGGC 2 cut(s) 46, 314
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 4 cut(s) 90, 177, 210, 221
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 7 cut(s) 21, 58, 116, 171, 254, 313, 326
Lsp1109I GCAGC 3 cut(s) 252, 303, 306
MaeI CTAG 4 cut(s) 41, 110, 116, 135
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 295
MalI GATC 4 cut(s) 92, 179, 212, 223
MboI GATC 4 cut(s) 90, 177, 210, 221
MflI RGATCY 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 2 cut(s) 55, 68
MmeI TCCRAC 2 cut(s) 84, 199
MnlI CCTC 3 cut(s) 24, 43, 77
MroNI GCCGGC 2 cut(s) 44, 312
MspA1I CMGCKG 1 cut(s) 265
MspI CCGG 4 cut(s) 45, 103, 158, 313
MspR9I CCNGG 2 cut(s) 103, 158
MwoI GCNNNNNNNGC 5 cut(s) 45, 236, 278, 309, 316
NaeI GCCGGC 2 cut(s) 46, 314
NciI CCSGG 2 cut(s) 103, 158
NcoI CCATGG 1 cut(s) 77
NdeII GATC 4 cut(s) 90, 177, 210, 221
NgoMIV GCCGGC 2 cut(s) 44, 312
NlaIII CATG 1 cut(s) 81
NmeAIII GCCGAG 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 295
PdiI GCCGGC 2 cut(s) 46, 314
PkrI GCNGC 4 cut(s) 249, 267, 318, 321
Psp124BI GAGCTC 1 cut(s) 257
PstI CTGCAG 1 cut(s) 270
PsuI RGATCY 1 cut(s) 210
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SacI GAGCTC 1 cut(s) 257
SatI GCNGC 4 cut(s) 248, 266, 317, 320
Sau3AI GATC 4 cut(s) 90, 177, 210, 221
ScrFI CCNGG 2 cut(s) 103, 158
SduI GDGCHC 1 cut(s) 257
SetI ASST 5 cut(s) 115, 146, 186, 219, 257
SfcI CTRYAG 1 cut(s) 266
SfiI GGCCNNNNNGGCC 1 cut(s) 45
Sse9I AATT 2 cut(s) 55, 68
SsiI CCGC 3 cut(s) 245, 248, 263
SspMI CTAG 4 cut(s) 41, 110, 116, 135
SstI GAGCTC 1 cut(s) 257
StyD4I CCNGG 2 cut(s) 101, 156
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 2 cut(s) 166, 290
TaiI ACGT 1 cut(s) 219
TaqI TCGA 1 cut(s) 327
TasI AATT 2 cut(s) 55, 68
TauI GCSGC 1 cut(s) 250
TscAI CASTG 2 cut(s) 34, 300
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 3 cut(s) 265, 316, 319
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 17, 81
TspRI CASTG 2 cut(s) 34, 300
XapI RAATTY 2 cut(s) 55, 68
XbaI TCTAGA 1 cut(s) 134
XspI CTAG 4 cut(s) 41, 110, 116, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.