Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000367.1

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Reverse (-)

17607 .. 21224

Gene Structure 3618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000367.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgcattcattacctagttggcagtcccttctaggtaatagtctggttgacagtcccttccagactacatcccggttagcagtctcttccgatgcgtcacctggggatttgctcagtgaacccctccatgacctgaattggtgccttgaccaactccaaagccaactccaccagcaactcctataccaccaccgtgcttattggccatcgacgagtctagtccagcccaacctccatgaagtccgacaatcagctttgaatccggcaacggaagatgagagaaagggcagagttggaagagatgatcggaaggcgagggaggagagcgtggagtgttcggattcggatctggtgttgggatccacggacaggttgggacccgacccggagatggtgcagaagcagatcaaggttgcagagttcaaggtgatggatgcgatctacgctggatcgggggcttattatgcttctccgccgccgagctccattccgctgccggcttttttggctaagtacggtgcagcgaccagcaatctgcgccggctgctgcgtctcgatttgctcggtacatcgcccttcgacgccaatttggtggccggagactgccggaatcggaaaatatcgacgctgcctcaaaaatgctacagtgaccgtcatcttcttctcgttgacgtcaaaatccgtcgccggatggaggagttatggccggaagaaggtgacgaggtcggagaggaagagagaatcggggagagagaaaggagagggctcggtaagtttccgaaaatggaaacttaccacagtaacccgtcctatttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

272

Amino Acids

30.65

Weight (kDa)

5.79

Isoelectric Point (pI)

63.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	675
AccB1I	GGYRCC	1 cut(s)	141
AciI	CCGC	3 cut(s)	473, 476, 491
AclWI	GGATC	4 cut(s)	354, 354, 367, 457
AcoI	YGGCCR	3 cut(s)	203, 594, 704
AcyI	GRCGYC	2 cut(s)	582, 672
AfaI	GTAC	2 cut(s)	515, 568
AfiI	CCNNNNNNNGG	4 cut(s)	369, 391, 694, 713
AgsI	TTSAA	2 cut(s)	259, 424
AjnI	CCWGG	1 cut(s)	100
AleI	CACNNNNGTG	1 cut(s)	192
AluBI	AGCT	2 cut(s)	254, 483
AluI	AGCT	2 cut(s)	254, 483
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	3 cut(s)	88, 557, 594
AlwI	GGATC	4 cut(s)	354, 354, 367, 457
AoxI	GGCC	3 cut(s)	203, 594, 704
ApeKI	GCWGC	5 cut(s)	493, 521, 544, 547, 628
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	1 cut(s)	377
AsuC2I	CCSGG	2 cut(s)	73, 386
AsuHPI	GGTGA	3 cut(s)	90, 439, 728
AvaII	GGWCC	1 cut(s)	377
BalI	TGGCCA	1 cut(s)	205
BamHI	GGATCC	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	141
BanII	GRGCYC	2 cut(s)	485, 768
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	5 cut(s)	480, 531, 533, 534, 615
BccI	CCATC	4 cut(s)	214, 385, 424, 685
BciT130I	CCWGG	1 cut(s)	102
BcnI	CCSGG	2 cut(s)	73, 386
BcoDI	GTCTC	3 cut(s)	88, 557, 594
BfaI	CTAG	3 cut(s)	15, 32, 218
BfmI	CTRYAG	1 cut(s)	643
BisI	GCNGC	6 cut(s)	476, 494, 522, 545, 548, 629
BlsI	GCNGC	6 cut(s)	477, 495, 523, 546, 549, 630
Bme1390I	CCNGG	3 cut(s)	73, 102, 386
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	4 cut(s)	143, 361, 378, 379
BmrFI	CCNGG	3 cut(s)	73, 102, 386
BmsI	GCATC	2 cut(s)	82, 424
BpuMI	CCSGG	2 cut(s)	73, 386
BsaBI	GATNNNNATC	1 cut(s)	345
BsaHI	GRCGYC	2 cut(s)	582, 672
BsaJI	CCNNGG	2 cut(s)	101, 363
Bsc4I	CCNNNNNNNGG	4 cut(s)	369, 391, 694, 713
Bse118I	RCCGGY	2 cut(s)	496, 540
Bse8I	GATNNNNATC	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	101, 363
BseGI	GGATG	3 cut(s)	68, 439, 696
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	4 cut(s)	369, 391, 694, 713
BseMII	CTCAG	1 cut(s)	127
BseRI	GAGGAG	2 cut(s)	335, 710
BseXI	GCAGC	5 cut(s)	480, 531, 533, 534, 615
BsgI	GTGCAG	2 cut(s)	416, 540
BshFI	GGCC	3 cut(s)	205, 596, 706
BshNI	GGYRCC	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	485
BsiSI	CCGG	9 cut(s)	73, 263, 386, 497, 541, 597, 607, 688, 707
BslFI	GGGAC	3 cut(s)	10, 39, 390
BslI	CCNNNNNNNGG	4 cut(s)	369, 391, 694, 713
BsmAI	GTCTC	3 cut(s)	88, 557, 594
BsmBI	CGTCTC	1 cut(s)	557
BsmFI	GGGAC	3 cut(s)	10, 39, 390
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	3 cut(s)	205, 596, 706
Bsp1286I	GDGCHC	2 cut(s)	485, 768
Bsp143I	GATC	6 cut(s)	304, 346, 359, 405, 438, 449
BspACI	CCGC	3 cut(s)	473, 476, 491
BspANI	GGCC	3 cut(s)	205, 596, 706
BspCNI	CTCAG	1 cut(s)	126
BspLI	GGNNCC	4 cut(s)	143, 361, 378, 379
BspPI	GGATC	4 cut(s)	354, 354, 367, 457
BspT107I	GGYRCC	1 cut(s)	141
BsrFI	RCCGGY	2 cut(s)	496, 540
BssAI	RCCGGY	2 cut(s)	496, 540
BssECI	CCNNGG	2 cut(s)	101, 363
BssMI	GATC	6 cut(s)	304, 346, 359, 405, 438, 449
BssNI	GRCGYC	2 cut(s)	582, 672
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	6 cut(s)	53, 194, 518, 647, 653, 800
Bst6I	CTCTTC	3 cut(s)	91, 292, 729
BstACI	GRCGYC	2 cut(s)	582, 672
BstC8I	GCNNGC	2 cut(s)	498, 542
BstDEI	CTNAG	2 cut(s)	113, 510
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	3 cut(s)	68, 439, 696
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	6 cut(s)	307, 349, 362, 408, 441, 452
BstMAI	GTCTC	3 cut(s)	88, 557, 594
BstMBI	GATC	6 cut(s)	304, 346, 359, 405, 438, 449
BstMWI	GCNNNNNNNGC	5 cut(s)	443, 464, 506, 537, 544
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	3 cut(s)	71, 100, 384
BstSFI	CTRYAG	1 cut(s)	643
BstV1I	GCAGC	5 cut(s)	480, 531, 533, 534, 615
BstX2I	RGATCY	2 cut(s)	346, 359
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstYI	RGATCY	2 cut(s)	346, 359
BsuRI	GGCC	3 cut(s)	205, 596, 706
BtgI	CCRYGG	1 cut(s)	363
BtgZI	GCGATG	1 cut(s)	555
BtsCI	GGATG	3 cut(s)	68, 439, 696
BtsIMutI	CAGTG	2 cut(s)	121, 652
Cac8I	GCNNGC	2 cut(s)	498, 542
CfoI	GCGC	1 cut(s)	540
Cfr10I	RCCGGY	2 cut(s)	496, 540
Cfr13I	GGNCC	1 cut(s)	377
CseI	GACGC	4 cut(s)	84, 539, 590, 634
Csp6I	GTAC	2 cut(s)	514, 567
CviAII	CATG	2 cut(s)	128, 236
CviQI	GTAC	2 cut(s)	514, 567
DdeI	CTNAG	2 cut(s)	113, 510
DpnI	GATC	6 cut(s)	306, 348, 361, 407, 440, 451
DpnII	GATC	6 cut(s)	304, 346, 359, 405, 438, 449
EaeI	YGGCCR	3 cut(s)	203, 594, 704
Eam1104I	CTCTTC	3 cut(s)	91, 292, 729
EarI	CTCTTC	3 cut(s)	91, 292, 729
EciI	GGCGGA	1 cut(s)	462
Ecl136II	GAGCTC	1 cut(s)	483
Eco24I	GRGCYC	2 cut(s)	485, 768
Eco47I	GGWCC	1 cut(s)	377
Eco53kI	GAGCTC	1 cut(s)	483
EcoICRI	GAGCTC	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	485, 768
Esp3I	CGTCTC	1 cut(s)	557
FaeI	CATG	2 cut(s)	131, 239
FaiI	YATR	6 cut(s)	129, 184, 237, 465, 703, 817
FaqI	GGGAC	3 cut(s)	10, 39, 390
FatI	CATG	2 cut(s)	127, 235
Fnu4HI	GCNGC	6 cut(s)	476, 494, 522, 545, 548, 629
FokI	GGATG	3 cut(s)	55, 446, 703
FriOI	GRGCYC	2 cut(s)	485, 768
Fsp4HI	GCNGC	6 cut(s)	476, 494, 522, 545, 548, 629
FspBI	CTAG	3 cut(s)	15, 32, 218
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	6 cut(s)	476, 494, 522, 545, 548, 629
HaeIII	GGCC	3 cut(s)	205, 596, 706
HapII	CCGG	9 cut(s)	73, 263, 386, 497, 541, 597, 607, 688, 707
HgaI	GACGC	4 cut(s)	84, 539, 590, 634
HhaI	GCGC	1 cut(s)	540
Hin1I	GRCGYC	2 cut(s)	582, 672
Hin1II	CATG	2 cut(s)	131, 239
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HincII	GTYRAC	2 cut(s)	49, 670
HindII	GTYRAC	2 cut(s)	49, 670
HinfI	GANTC	5 cut(s)	214, 259, 341, 610, 741
HpaII	CCGG	9 cut(s)	73, 263, 386, 497, 541, 597, 607, 688, 707
HphI	GGTGA	3 cut(s)	90, 439, 728
Hpy166II	GTNNAC	3 cut(s)	49, 119, 670
Hpy188I	TCNGA	8 cut(s)	91, 245, 309, 340, 346, 615, 728, 780
Hpy188III	TCNNGA	2 cut(s)	61, 554
Hpy8I	GTNNAC	3 cut(s)	49, 119, 670
Hpy99I	CGWCG	4 cut(s)	214, 584, 628, 687
HpyAV	CCTTC	5 cut(s)	38, 67, 304, 586, 707
HpyCH4III	ACNGT	6 cut(s)	53, 194, 518, 647, 653, 800
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	4 cut(s)	4, 397, 416, 521
HpyF10VI	GCNNNNNNNGC	5 cut(s)	443, 464, 506, 537, 544
HpyF3I	CTNAG	2 cut(s)	113, 510
HpySE526I	ACGT	1 cut(s)	672
Hsp92I	GRCGYC	2 cut(s)	582, 672
Hsp92II	CATG	2 cut(s)	131, 239
HspAI	GCGC	1 cut(s)	538
KflI	GGGWCCC	1 cut(s)	377
KroI	GCCGGC	2 cut(s)	496, 540
KroNI	GCCGGC	2 cut(s)	498, 542
Kzo9I	GATC	6 cut(s)	304, 346, 359, 405, 438, 449
LmnI	GCTCC	1 cut(s)	488
Lsp1109I	GCAGC	5 cut(s)	480, 531, 533, 534, 615
LweI	GCATC	2 cut(s)	82, 424
MaeI	CTAG	3 cut(s)	15, 32, 218
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	4 cut(s)	96, 647, 716, 800
MalI	GATC	6 cut(s)	306, 348, 361, 407, 440, 451
MboI	GATC	6 cut(s)	304, 346, 359, 405, 438, 449
MboII	GAAGA	7 cut(s)	78, 284, 309, 650, 653, 722, 746
MflI	RGATCY	2 cut(s)	346, 359
MhlI	GDGCHC	2 cut(s)	485, 768
MlsI	TGGCCA	1 cut(s)	205
MluCI	AATT	2 cut(s)	136, 586
MluNI	TGGCCA	1 cut(s)	205
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	3 cut(s)	268, 274, 706
MnlI	CCTC	9 cut(s)	134, 242, 309, 313, 642, 688, 715, 724, 755
Mox20I	TGGCCA	1 cut(s)	205
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	2 cut(s)	496, 540
MscI	TGGCCA	1 cut(s)	205
MslI	CAYNNNNRTG	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	205
MspA1I	CMGCKG	1 cut(s)	493
MspI	CCGG	9 cut(s)	73, 263, 386, 497, 541, 597, 607, 688, 707
MspR9I	CCNGG	3 cut(s)	73, 102, 386
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	5 cut(s)	443, 464, 506, 537, 544
NaeI	GCCGGC	2 cut(s)	498, 542
NciI	CCSGG	2 cut(s)	73, 386
NdeII	GATC	6 cut(s)	304, 346, 359, 405, 438, 449
NgoMIV	GCCGGC	2 cut(s)	496, 540
NlaIII	CATG	2 cut(s)	131, 239
NlaIV	GGNNCC	4 cut(s)	143, 361, 378, 379
NmeAIII	GCCGAG	1 cut(s)	504
NmuCI	GTSAC	3 cut(s)	96, 647, 716
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	192
PctI	GAATGC	1 cut(s)	4
PdiI	GCCGGC	2 cut(s)	498, 542
PfeI	GAWTC	4 cut(s)	259, 341, 610, 741
PflFI	GACNNNGTC	1 cut(s)	722
PkrI	GCNGC	6 cut(s)	477, 495, 523, 546, 549, 630
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
PpuMI	RGGWCCY	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	485
Psp5II	RGGWCCY	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	4 cut(s)	143, 361, 378, 379
PspPI	GGNCC	1 cut(s)	377
PspPPI	RGGWCCY	1 cut(s)	377
PsuI	RGATCY	2 cut(s)	346, 359
PsyI	GACNNNGTC	1 cut(s)	722
RsaI	GTAC	2 cut(s)	515, 568
RsaNI	GTAC	2 cut(s)	514, 567
RseI	CAYNNNNRTG	1 cut(s)	192
SacI	GAGCTC	1 cut(s)	485
SatI	GCNGC	6 cut(s)	476, 494, 522, 545, 548, 629
Sau3AI	GATC	6 cut(s)	304, 346, 359, 405, 438, 449
Sau96I	GGNCC	1 cut(s)	377
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	3 cut(s)	73, 102, 386
SduI	GDGCHC	2 cut(s)	485, 768
SfaNI	GCATC	2 cut(s)	82, 424
SfcI	CTRYAG	1 cut(s)	643
SinI	GGWCC	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse9I	AATT	2 cut(s)	136, 586
SsiI	CCGC	3 cut(s)	473, 476, 491
SspMI	CTAG	3 cut(s)	15, 32, 218
SstI	GAGCTC	1 cut(s)	485
StyD4I	CCNGG	3 cut(s)	71, 100, 384
TaaI	ACNGT	6 cut(s)	53, 194, 518, 647, 653, 800
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	4 cut(s)	209, 555, 579, 623
TasI	AATT	2 cut(s)	136, 586
TauI	GCSGC	1 cut(s)	478
TfiI	GAWTC	4 cut(s)	259, 341, 610, 741
TscAI	CASTG	2 cut(s)	121, 652
TseFI	GTSAC	3 cut(s)	96, 647, 716
TseI	GCWGC	5 cut(s)	493, 521, 544, 547, 628
Tsp45I	GTSAC	3 cut(s)	96, 647, 716
TspDTI	ATGAA	1 cut(s)	252
TspGWI	ACGGA	3 cut(s)	284, 380, 671
TspRI	CASTG	2 cut(s)	121, 652
Tth111I	GACNNNGTC	1 cut(s)	722
VpaK11BI	GGWCC	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XspI	CTAG	3 cut(s)	15, 32, 218
ZraI	GACGTC	1 cut(s)	673
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.