RLG00000008176

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003311
Physical Location & Seq
Reverse (-)
26659116 .. 26659539
424 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008176

Sequence Viewer

Length: 351 bp
ATGAAGAGCCCTAGCCCTACGCTCCGGCGCAGCGAGGCTTTGAATCCGGCAACAGAAGATGAGAGAGAGGGCGGAGTTGGAAGAGATGATCGGAAGGCGAGCGAGGAGAGCGTGGAGTGTTCGGATTCAGATCTGGTGTTGGGATCCACGGACAGGTTGGGACCCGACCCAGAGACGGTGCAAAAGCAGATCAAGGTTGCAGAGTTCAAGGTGATGGATGCGATCTACGCTGGATCGGGGGCTTATTATGCTTCTGCGCCGCCGAGCTCCATTCCGCTGCCGACTTTTTTGGCTAGGTACGGTGCAGCGACCAGCAATCTGCGCCGGCTGCTGCGTCTCGATTTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

117

Amino Acids

12.53

Weight (kDa)

4.98

Isoelectric Point (pI)

65.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 72, 260, 275
AclWI GGATC 3 cut(s) 138, 151, 241
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 2 cut(s) 153, 175
AgsI TTSAA 2 cut(s) 43, 208
AluBI AGCT 1 cut(s) 267
AluI AGCT 1 cut(s) 267
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 2 cut(s) 167, 341
AlwI GGATC 3 cut(s) 138, 151, 241
ApeKI GCWGC 5 cut(s) 30, 277, 305, 328, 331
AspLEI GCGC 3 cut(s) 30, 259, 324
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 223
AvaII GGWCC 1 cut(s) 161
BamHI GGATCC 1 cut(s) 143
BanII GRGCYC 2 cut(s) 11, 269
Bbv12I GWGCWC 1 cut(s) 269
BbvI GCAGC 5 cut(s) 42, 264, 315, 317, 318
BccI CCATC 1 cut(s) 208
BcoDI GTCTC 2 cut(s) 167, 341
BfaI CTAG 2 cut(s) 12, 294
BglII AGATCT 1 cut(s) 130
BisI GCNGC 6 cut(s) 31, 260, 278, 306, 329, 332
BlsI GCNGC 6 cut(s) 32, 261, 279, 307, 330, 333
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 3 cut(s) 145, 162, 163
BmsI GCATC 1 cut(s) 208
BsaBI GATNNNNATC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 175
Bse118I RCCGGY 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 223
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 153, 175
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 5 cut(s) 42, 264, 315, 317, 318
BsgI GTGCAG 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 269
BsiSI CCGG 3 cut(s) 25, 47, 325
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 153, 175
BsmAI GTCTC 2 cut(s) 167, 341
BsmBI CGTCTC 2 cut(s) 167, 341
BsmFI GGGAC 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 11, 269
Bsp143I GATC 6 cut(s) 88, 130, 143, 189, 222, 233
BspACI CCGC 3 cut(s) 72, 260, 275
BspLI GGNNCC 3 cut(s) 145, 162, 163
BspPI GGATC 3 cut(s) 138, 151, 241
BsrFI RCCGGY 1 cut(s) 324
BssAI RCCGGY 1 cut(s) 324
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 6 cut(s) 88, 130, 143, 189, 222, 233
Bst4CI ACNGT 2 cut(s) 178, 302
Bst6I CTCTTC 1 cut(s) 76
BstC8I GCNNGC 2 cut(s) 100, 326
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 223
BstHHI GCGC 3 cut(s) 30, 259, 324
BstKTI GATC 6 cut(s) 91, 133, 146, 192, 225, 236
BstMAI GTCTC 2 cut(s) 167, 341
BstMBI GATC 6 cut(s) 88, 130, 143, 189, 222, 233
BstMWI GCNNNNNNNGC 5 cut(s) 108, 227, 248, 321, 328
BstV1I GCAGC 5 cut(s) 42, 264, 315, 317, 318
BstX2I RGATCY 2 cut(s) 130, 143
BstYI RGATCY 2 cut(s) 130, 143
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 1 cut(s) 223
Cac8I GCNNGC 2 cut(s) 100, 326
CfoI GCGC 3 cut(s) 30, 259, 324
Cfr10I RCCGGY 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 161
CseI GACGC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 298
CviJI RGCY 7 cut(s) 9, 15, 38, 242, 267, 293, 328
CviKI_1 RGCY 7 cut(s) 9, 15, 38, 242, 267, 293, 328
CviQI GTAC 1 cut(s) 298
DpnI GATC 6 cut(s) 90, 132, 145, 191, 224, 235
DpnII GATC 6 cut(s) 88, 130, 143, 189, 222, 233
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
EciI GGCGGA 1 cut(s) 87
Ecl136II GAGCTC 1 cut(s) 267
Eco24I GRGCYC 2 cut(s) 11, 269
Eco47I GGWCC 1 cut(s) 161
Eco53kI GAGCTC 1 cut(s) 267
EcoICRI GAGCTC 1 cut(s) 267
EcoO109I RGGNCCY 1 cut(s) 161
EcoT38I GRGCYC 2 cut(s) 11, 269
Esp3I CGTCTC 2 cut(s) 167, 341
FaiI YATR 1 cut(s) 249
FaqI GGGAC 1 cut(s) 174
Fnu4HI GCNGC 6 cut(s) 31, 260, 278, 306, 329, 332
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 2 cut(s) 11, 269
Fsp4HI GCNGC 6 cut(s) 31, 260, 278, 306, 329, 332
FspBI CTAG 2 cut(s) 12, 294
GlaI GCGC 3 cut(s) 29, 258, 323
GluI GCNGC 6 cut(s) 31, 260, 278, 306, 329, 332
HapII CCGG 3 cut(s) 25, 47, 325
HgaI GACGC 1 cut(s) 323
HhaI GCGC 3 cut(s) 30, 259, 324
Hin6I GCGC 3 cut(s) 28, 257, 322
HinP1I GCGC 3 cut(s) 28, 257, 322
HinfI GANTC 2 cut(s) 43, 125
HpaII CCGG 3 cut(s) 25, 47, 325
HphI GGTGA 1 cut(s) 223
Hpy188I TCNGA 3 cut(s) 93, 124, 130
Hpy188III TCNNGA 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 2 cut(s) 178, 302
HpyCH4V TGCA 3 cut(s) 181, 200, 305
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 227, 248, 321, 328
HspAI GCGC 3 cut(s) 28, 257, 322
KflI GGGWCCC 1 cut(s) 161
KroI GCCGGC 1 cut(s) 324
KroNI GCCGGC 1 cut(s) 326
Kzo9I GATC 6 cut(s) 88, 130, 143, 189, 222, 233
LmnI GCTCC 2 cut(s) 27, 272
LpnPI CCDG 8 cut(s) 38, 60, 119, 139, 183, 216, 325, 338
Lsp1109I GCAGC 5 cut(s) 42, 264, 315, 317, 318
LweI GCATC 1 cut(s) 208
MaeI CTAG 2 cut(s) 12, 294
MalI GATC 6 cut(s) 90, 132, 145, 191, 224, 235
MboI GATC 6 cut(s) 88, 130, 143, 189, 222, 233
MboII GAAGA 3 cut(s) 16, 68, 93
MflI RGATCY 2 cut(s) 130, 143
MhlI GDGCHC 2 cut(s) 11, 269
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 3 cut(s) 28, 61, 97
MroNI GCCGGC 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 3 cut(s) 25, 47, 325
MwoI GCNNNNNNNGC 5 cut(s) 108, 227, 248, 321, 328
NaeI GCCGGC 1 cut(s) 326
NdeII GATC 6 cut(s) 88, 130, 143, 189, 222, 233
NgoMIV GCCGGC 1 cut(s) 324
NlaIV GGNNCC 3 cut(s) 145, 162, 163
NmeAIII GCCGAG 1 cut(s) 288
PdiI GCCGGC 1 cut(s) 326
PfeI GAWTC 2 cut(s) 43, 125
PkrI GCNGC 6 cut(s) 32, 261, 279, 307, 330, 333
PpuMI RGGWCCY 1 cut(s) 161
Psp124BI GAGCTC 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 161
PspN4I GGNNCC 3 cut(s) 145, 162, 163
PspPI GGNCC 1 cut(s) 161
PspPPI RGGWCCY 1 cut(s) 161
PsuI RGATCY 2 cut(s) 130, 143
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SacI GAGCTC 1 cut(s) 269
SatI GCNGC 6 cut(s) 31, 260, 278, 306, 329, 332
Sau3AI GATC 6 cut(s) 88, 130, 143, 189, 222, 233
Sau96I GGNCC 1 cut(s) 161
SduI GDGCHC 2 cut(s) 11, 269
SetI ASST 5 cut(s) 158, 198, 213, 269, 299
SfaNI GCATC 1 cut(s) 208
SinI GGWCC 1 cut(s) 161
SsiI CCGC 3 cut(s) 72, 260, 275
SspMI CTAG 2 cut(s) 12, 294
SstI GAGCTC 1 cut(s) 269
TaaI ACNGT 2 cut(s) 178, 302
TaqI TCGA 1 cut(s) 339
TauI GCSGC 1 cut(s) 262
TfiI GAWTC 2 cut(s) 43, 125
TseI GCWGC 5 cut(s) 30, 277, 305, 328, 331
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 161
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XspI CTAG 2 cut(s) 12, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.