Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Forward (+)

830845 .. 832222

Gene Structure 1378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGGAACGGCGATTCTCCGATCACAGGACTGCCTTCGAGGTCGTTTCCGCCACGAAGCCCTAGCCTTGACTTTGACCCCTCGCTCCGGAACAACGCGCTGGAGCCCCAATTTCTCTAATCCTAGCTCCAATGGCTCCCAATCTCGCCGCCGGAAGAGGAGTCCGGTCGGCGTTCAATCGAATCACTGCGGCGATCGTGTGGTGGCGAAGGTTCCGGGGAAGGAGCTGGTGATGGGACAGGTGAAGATCCTCAGGCGCGGCGAGCCTTTGAATCCGGTGACGAACGATCAGAGAGTCGTCGGAGTTGTTGCTGCGAGAGACGATCGGAGGCCGAGGAGGAGCGTGGAGTGTGCGGATCCGGATCTGGTGTTGGGATCCACGGACCGGTTGGGACCCGACCCGGAGACGGTGCAGAAGCAGATCAAAGTTGCAGAGTTCAAGGTGATGGATACGATCTACGCCGGATCGGGGGCTTATTATGCTTCTCCGCCGCCGAGCTCCGTTCCGCTGCCGGCTTTTTTGGCTAAGAACGGTGCGGCGACCAGCGATCTGCGCCGGCTGCTTCGTCTCGATTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

194

Amino Acids

21.07

Weight (kDa)

10.5

Isoelectric Point (pI)

71.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	97, 258
AccIII	TCCGGA	2 cut(s)	86, 358
AciI	CCGC	9 cut(s)	49, 148, 189, 258, 353, 488, 491, 506, 536
AclWI	GGATC	7 cut(s)	241, 350, 363, 369, 369, 382, 472
AfiI	CCNNNNNNNGG	5 cut(s)	25, 86, 384, 406, 468
AgeI	ACCGGT	1 cut(s)	384
AgsI	TTSAA	3 cut(s)	176, 271, 439
AluBI	AGCT	3 cut(s)	126, 226, 498
AluI	AGCT	3 cut(s)	126, 226, 498
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	3 cut(s)	312, 398, 572
AlwI	GGATC	7 cut(s)	241, 350, 363, 369, 369, 382, 472
Aor13HI	TCCGGA	2 cut(s)	86, 358
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	3 cut(s)	311, 508, 559
AsiGI	ACCGGT	1 cut(s)	384
AspLEI	GCGC	3 cut(s)	99, 258, 555
AspS9I	GGNCC	2 cut(s)	382, 392
AsuC2I	CCSGG	2 cut(s)	216, 401
AsuHPI	GGTGA	4 cut(s)	241, 253, 289, 454
AvaII	GGWCC	2 cut(s)	382, 392
AxyI	CCTNAGG	1 cut(s)	251
BamHI	GGATCC	2 cut(s)	355, 374
BanII	GRGCYC	2 cut(s)	107, 500
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	3 cut(s)	298, 495, 546
BccI	CCATC	2 cut(s)	226, 439
BceAI	ACGGC	1 cut(s)	24
BciVI	GTATCC	1 cut(s)	442
BcnI	CCSGG	2 cut(s)	216, 401
BcoDI	GTCTC	3 cut(s)	312, 398, 572
BfaI	CTAG	2 cut(s)	62, 123
BfuI	GTATCC	1 cut(s)	442
BisI	GCNGC	8 cut(s)	148, 190, 259, 312, 491, 509, 537, 560
BlsI	GCNGC	8 cut(s)	149, 191, 260, 313, 492, 510, 538, 561
Bme1390I	CCNGG	2 cut(s)	216, 401
Bme18I	GGWCC	2 cut(s)	382, 392
BmgT120I	GGNCC	2 cut(s)	382, 392
BmiI	GGNNCC	7 cut(s)	104, 136, 213, 357, 376, 393, 394
BmrFI	CCNGG	2 cut(s)	216, 401
BpmI	CTGGAG	1 cut(s)	121
BpuMI	CCSGG	2 cut(s)	216, 401
BsaBI	GATNNNNATC	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	215, 332, 378
BsaWI	WCCGGW	5 cut(s)	86, 163, 274, 358, 384
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 86, 384, 406, 468
Bse118I	RCCGGY	3 cut(s)	384, 511, 555
Bse21I	CCTNAGG	1 cut(s)	251
Bse8I	GATNNNNATC	1 cut(s)	360
BseAI	TCCGGA	2 cut(s)	86, 358
BseDI	CCNNGG	3 cut(s)	215, 332, 378
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	5 cut(s)	25, 86, 384, 406, 468
BseMII	CTCAG	1 cut(s)	265
BseRI	GAGGAG	3 cut(s)	172, 349, 352
BseXI	GCAGC	3 cut(s)	298, 495, 546
BsgI	GTGCAG	1 cut(s)	431
Bsh1236I	CGCG	2 cut(s)	97, 258
Bsh1285I	CGRYCG	3 cut(s)	168, 196, 325
BshFI	GGCC	1 cut(s)	331
BshTI	ACCGGT	1 cut(s)	384
BsiEI	CGRYCG	3 cut(s)	168, 196, 325
BsiHKAI	GWGCWC	1 cut(s)	500
BslFI	GGGAC	2 cut(s)	249, 405
BslI	CCNNNNNNNGG	5 cut(s)	25, 86, 384, 406, 468
BsmAI	GTCTC	3 cut(s)	312, 398, 572
BsmBI	CGTCTC	3 cut(s)	312, 398, 572
BsmFI	GGGAC	2 cut(s)	249, 405
BsnI	GGCC	1 cut(s)	331
Bsp1286I	GDGCHC	2 cut(s)	107, 500
Bsp13I	TCCGGA	2 cut(s)	86, 358
BspACI	CCGC	9 cut(s)	49, 148, 189, 258, 353, 488, 491, 506, 536
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	1 cut(s)	264
BspEI	TCCGGA	2 cut(s)	86, 358
BspFNI	CGCG	2 cut(s)	97, 258
BspLI	GGNNCC	7 cut(s)	104, 136, 213, 357, 376, 393, 394
BspPI	GGATC	7 cut(s)	241, 350, 363, 369, 369, 382, 472
BsrFI	RCCGGY	3 cut(s)	384, 511, 555
BssAI	RCCGGY	3 cut(s)	384, 511, 555
BssECI	CCNNGG	3 cut(s)	215, 332, 378
Bst4CI	ACNGT	2 cut(s)	409, 533
Bst6I	CTCTTC	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	263, 513, 557
BstDEI	CTNAG	2 cut(s)	251, 525
BstDSI	CCRYGG	1 cut(s)	378
BstFNI	CGCG	2 cut(s)	97, 258
BstHHI	GCGC	3 cut(s)	99, 258, 555
BstMAI	GTCTC	3 cut(s)	312, 398, 572
BstMCI	CGRYCG	3 cut(s)	168, 196, 325
BstMWI	GCNNNNNNNGC	6 cut(s)	132, 262, 479, 521, 552, 559
BstSCI	CCNGG	2 cut(s)	214, 399
BstUI	CGCG	2 cut(s)	97, 258
BstV1I	GCAGC	3 cut(s)	298, 495, 546
BstX2I	RGATCY	4 cut(s)	246, 355, 361, 374
BstYI	RGATCY	4 cut(s)	246, 355, 361, 374
Bsu36I	CCTNAGG	1 cut(s)	251
BsuI	GTATCC	1 cut(s)	442
BsuRI	GGCC	1 cut(s)	331
BtgI	CCRYGG	1 cut(s)	378
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	3 cut(s)	263, 513, 557
CfoI	GCGC	3 cut(s)	99, 258, 555
Cfr10I	RCCGGY	3 cut(s)	384, 511, 555
Cfr13I	GGNCC	2 cut(s)	382, 392
CpoI	CGGWCCG	1 cut(s)	382
CspAI	ACCGGT	1 cut(s)	384
CspI	CGGWCCG	1 cut(s)	382
DdeI	CTNAG	2 cut(s)	251, 525
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
EciI	GGCGGA	2 cut(s)	38, 477
Ecl136II	GAGCTC	1 cut(s)	498
Eco24I	GRGCYC	2 cut(s)	107, 500
Eco47I	GGWCC	2 cut(s)	382, 392
Eco53kI	GAGCTC	1 cut(s)	498
Eco81I	CCTNAGG	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	392
EcoT38I	GRGCYC	2 cut(s)	107, 500
Esp3I	CGTCTC	3 cut(s)	312, 398, 572
FaiI	YATR	1 cut(s)	480
FaqI	GGGAC	2 cut(s)	249, 405
Fnu4HI	GCNGC	8 cut(s)	148, 190, 259, 312, 491, 509, 537, 560
FriOI	GRGCYC	2 cut(s)	107, 500
Fsp4HI	GCNGC	8 cut(s)	148, 190, 259, 312, 491, 509, 537, 560
FspBI	CTAG	2 cut(s)	62, 123
GlaI	GCGC	3 cut(s)	98, 257, 554
GluI	GCNGC	8 cut(s)	148, 190, 259, 312, 491, 509, 537, 560
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	331
HhaI	GCGC	3 cut(s)	99, 258, 555
Hin6I	GCGC	3 cut(s)	97, 256, 553
HinP1I	GCGC	3 cut(s)	97, 256, 553
HinfI	GANTC	5 cut(s)	13, 160, 181, 271, 294
HphI	GGTGA	4 cut(s)	241, 253, 289, 454
Hpy188I	TCNGA	4 cut(s)	20, 291, 302, 327
Hpy188III	TCNNGA	3 cut(s)	87, 359, 569
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	3 cut(s)	44, 202, 214
HpyCH4III	ACNGT	2 cut(s)	409, 533
HpyCH4V	TGCA	2 cut(s)	412, 431
HpyF10VI	GCNNNNNNNGC	6 cut(s)	132, 262, 479, 521, 552, 559
HpyF3I	CTNAG	2 cut(s)	251, 525
HspAI	GCGC	3 cut(s)	97, 256, 553
KflI	GGGWCCC	1 cut(s)	392
Kpn2I	TCCGGA	2 cut(s)	86, 358
KroI	GCCGGC	2 cut(s)	511, 555
KroNI	GCCGGC	2 cut(s)	513, 557
LmnI	GCTCC	7 cut(s)	89, 102, 131, 140, 223, 339, 503
Lsp1109I	GCAGC	3 cut(s)	298, 495, 546
MaeI	CTAG	2 cut(s)	62, 123
MaeIII	GTNAC	1 cut(s)	277
MboII	GAAGA	2 cut(s)	166, 256
MflI	RGATCY	4 cut(s)	246, 355, 361, 374
MhlI	GDGCHC	2 cut(s)	107, 500
MluCI	AATT	1 cut(s)	109
MlyI	GAGTC	2 cut(s)	169, 303
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	7 cut(s)	32, 90, 150, 260, 321, 327, 330
MroI	TCCGGA	2 cut(s)	86, 358
MroNI	GCCGGC	2 cut(s)	511, 555
MspA1I	CMGCKG	1 cut(s)	508
MspR9I	CCNGG	2 cut(s)	216, 401
MvnI	CGCG	2 cut(s)	97, 258
MwoI	GCNNNNNNNGC	6 cut(s)	132, 262, 479, 521, 552, 559
NaeI	GCCGGC	2 cut(s)	513, 557
NciI	CCSGG	2 cut(s)	216, 401
NgoMIV	GCCGGC	2 cut(s)	511, 555
NlaIV	GGNNCC	7 cut(s)	104, 136, 213, 357, 376, 393, 394
NmeAIII	GCCGAG	2 cut(s)	357, 519
NmuCI	GTSAC	1 cut(s)	277
PdiI	GCCGGC	2 cut(s)	513, 557
PfeI	GAWTC	3 cut(s)	13, 181, 271
PinAI	ACCGGT	1 cut(s)	384
PkrI	GCNGC	8 cut(s)	149, 191, 260, 313, 492, 510, 538, 561
Ple19I	CGATCG	2 cut(s)	196, 325
PleI	GAGTC	2 cut(s)	168, 302
PpsI	GAGTC	2 cut(s)	168, 302
PpuMI	RGGWCCY	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	500
Psp5II	RGGWCCY	1 cut(s)	392
PspN4I	GGNNCC	7 cut(s)	104, 136, 213, 357, 376, 393, 394
PspPI	GGNCC	2 cut(s)	382, 392
PspPPI	RGGWCCY	1 cut(s)	392
PsuI	RGATCY	4 cut(s)	246, 355, 361, 374
PvuI	CGATCG	2 cut(s)	196, 325
Rsr2I	CGGWCCG	1 cut(s)	382
RsrII	CGGWCCG	1 cut(s)	382
SacI	GAGCTC	1 cut(s)	500
SatI	GCNGC	8 cut(s)	148, 190, 259, 312, 491, 509, 537, 560
Sau96I	GGNCC	2 cut(s)	382, 392
SchI	GAGTC	2 cut(s)	169, 303
ScrFI	CCNGG	2 cut(s)	216, 401
SduI	GDGCHC	2 cut(s)	107, 500
SetI	ASST	7 cut(s)	43, 128, 213, 228, 243, 444, 500
SinI	GGWCC	2 cut(s)	382, 392
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	9 cut(s)	49, 148, 189, 258, 353, 488, 491, 506, 536
SspMI	CTAG	2 cut(s)	62, 123
SstI	GAGCTC	1 cut(s)	500
StyD4I	CCNGG	2 cut(s)	214, 399
TaaI	ACNGT	2 cut(s)	409, 533
TaqI	TCGA	3 cut(s)	37, 179, 570
TasI	AATT	1 cut(s)	109
TauI	GCSGC	5 cut(s)	150, 192, 261, 493, 539
TfiI	GAWTC	3 cut(s)	13, 181, 271
TscAI	CASTG	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	3 cut(s)	311, 508, 559
Tsp45I	GTSAC	1 cut(s)	277
TspGWI	ACGGA	2 cut(s)	395, 490
TspRI	CASTG	1 cut(s)	191
VpaK11BI	GGWCC	2 cut(s)	382, 392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XspI	CTAG	2 cut(s)	62, 123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.