Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Reverse (-)

36085373 .. 36086632

Gene Structure 1260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG202200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCAGCATACTCCACTTAGGAGCCCTAGCCCTAACCTTGACCCTACGCTCCGGCGCGGCGAGGCTTTGAATCCGGCAACGGAAGATGAGAGAGAGGGCGGAGTTGGAAGAGATGATCGGAAGGCGAGGGAGGAGAGCGTGGAGTGTTCGGATTCGGATTTGGTGTTGGGATCCACGGACAGGTTGGGACCCGACCCGAAGACGGTGCAGAAGCAGATCAAGGATGAAGAGTTCAAGGTGATGGATGCGATCTACGCTGGATCGGAGGCTTATTATGCTTCTCCGCCGCCGAGCTCCATTCCGCAGCCGGCTTTTTTAGCTAAGTACGGTGCAGCGACCAGCAATCTGCGCCGGCTGCTGTGTCTCGATTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

125

Amino Acids

13.69

Weight (kDa)

4.89

Isoelectric Point (pI)

67.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	57
AciI	CCGC	5 cut(s)	57, 99, 284, 287, 302
AclWI	GGATC	3 cut(s)	165, 178, 268
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	180, 202
AgsI	TTSAA	2 cut(s)	70, 235
AloI	GAACNNNNNNTCC	2 cut(s)	215, 247
AluBI	AGCT	2 cut(s)	294, 320
AluI	AGCT	2 cut(s)	294, 320
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	3 cut(s)	165, 178, 268
ApeKI	GCWGC	4 cut(s)	4, 304, 332, 355
AspLEI	GCGC	2 cut(s)	57, 351
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	188
BamHI	GGATCC	1 cut(s)	170
BanII	GRGCYC	2 cut(s)	26, 296
BbsI	GAAGAC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	4 cut(s)	16, 316, 342, 344
BccI	CCATC	1 cut(s)	235
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	1 cut(s)	27
BisI	GCNGC	6 cut(s)	5, 58, 287, 305, 333, 356
BlsI	GCNGC	6 cut(s)	6, 59, 288, 306, 334, 357
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	4 cut(s)	23, 172, 189, 190
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 202
Bse118I	RCCGGY	2 cut(s)	307, 351
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	229, 250
BseLI	CCNNNNNNNGG	2 cut(s)	180, 202
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	4 cut(s)	16, 316, 342, 344
BsgI	GTGCAG	2 cut(s)	227, 351
Bsh1236I	CGCG	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	296
BsiSI	CCGG	4 cut(s)	52, 74, 308, 352
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	2 cut(s)	180, 202
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	26, 296
Bsp143I	GATC	5 cut(s)	115, 170, 216, 249, 260
BspACI	CCGC	5 cut(s)	57, 99, 284, 287, 302
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	4 cut(s)	23, 172, 189, 190
BspPI	GGATC	3 cut(s)	165, 178, 268
BsrFI	RCCGGY	2 cut(s)	307, 351
BssAI	RCCGGY	2 cut(s)	307, 351
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	5 cut(s)	115, 170, 216, 249, 260
Bst4CI	ACNGT	2 cut(s)	205, 329
Bst6I	CTCTTC	2 cut(s)	103, 222
BstC8I	GCNNGC	2 cut(s)	309, 353
BstDEI	CTNAG	2 cut(s)	17, 321
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	229, 250
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	2 cut(s)	57, 351
BstKTI	GATC	5 cut(s)	118, 173, 219, 252, 263
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	5 cut(s)	115, 170, 216, 249, 260
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 275, 317, 348, 355
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	4 cut(s)	16, 316, 342, 344
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	229, 250
Cac8I	GCNNGC	2 cut(s)	309, 353
CfoI	GCGC	2 cut(s)	57, 351
Cfr10I	RCCGGY	2 cut(s)	307, 351
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	325
CviJI	RGCY	9 cut(s)	24, 30, 65, 269, 294, 307, 311, 320, 355
CviKI_1	RGCY	9 cut(s)	24, 30, 65, 269, 294, 307, 311, 320, 355
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	2 cut(s)	17, 321
DpnI	GATC	5 cut(s)	117, 172, 218, 251, 262
DpnII	GATC	5 cut(s)	115, 170, 216, 249, 260
Eam1104I	CTCTTC	2 cut(s)	103, 222
EarI	CTCTTC	2 cut(s)	103, 222
EciI	GGCGGA	2 cut(s)	114, 273
Ecl136II	GAGCTC	1 cut(s)	294
Eco24I	GRGCYC	2 cut(s)	26, 296
Eco47I	GGWCC	1 cut(s)	188
Eco53kI	GAGCTC	1 cut(s)	294
EcoICRI	GAGCTC	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	188
EcoT38I	GRGCYC	2 cut(s)	26, 296
FaiI	YATR	2 cut(s)	9, 276
FaqI	GGGAC	1 cut(s)	201
Fnu4HI	GCNGC	6 cut(s)	5, 58, 287, 305, 333, 356
FokI	GGATG	2 cut(s)	236, 257
FriOI	GRGCYC	2 cut(s)	26, 296
Fsp4HI	GCNGC	6 cut(s)	5, 58, 287, 305, 333, 356
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	2 cut(s)	56, 350
GluI	GCNGC	6 cut(s)	5, 58, 287, 305, 333, 356
HapII	CCGG	4 cut(s)	52, 74, 308, 352
HhaI	GCGC	2 cut(s)	57, 351
Hin6I	GCGC	2 cut(s)	55, 349
HinP1I	GCGC	2 cut(s)	55, 349
HinfI	GANTC	2 cut(s)	70, 152
HpaII	CCGG	4 cut(s)	52, 74, 308, 352
HphI	GGTGA	1 cut(s)	250
Hpy188I	TCNGA	4 cut(s)	120, 151, 157, 265
Hpy188III	TCNNGA	1 cut(s)	365
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	2 cut(s)	205, 329
HpyCH4V	TGCA	3 cut(s)	4, 208, 332
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 275, 317, 348, 355
HpyF3I	CTNAG	2 cut(s)	17, 321
HspAI	GCGC	2 cut(s)	55, 349
KflI	GGGWCCC	1 cut(s)	188
KroI	GCCGGC	2 cut(s)	307, 351
KroNI	GCCGGC	2 cut(s)	309, 353
Kzo9I	GATC	5 cut(s)	115, 170, 216, 249, 260
LmnI	GCTCC	3 cut(s)	21, 54, 299
LpnPI	CCDG	7 cut(s)	65, 87, 166, 243, 321, 352, 365
Lsp1109I	GCAGC	4 cut(s)	16, 316, 342, 344
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	27
MalI	GATC	5 cut(s)	117, 172, 218, 251, 262
MboI	GATC	5 cut(s)	115, 170, 216, 249, 260
MboII	GAAGA	4 cut(s)	95, 120, 211, 239
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	2 cut(s)	26, 296
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	5 cut(s)	55, 88, 120, 124, 259
MroNI	GCCGGC	2 cut(s)	307, 351
MspI	CCGG	4 cut(s)	52, 74, 308, 352
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	5 cut(s)	254, 275, 317, 348, 355
NaeI	GCCGGC	2 cut(s)	309, 353
NdeII	GATC	5 cut(s)	115, 170, 216, 249, 260
NgoMIV	GCCGGC	2 cut(s)	307, 351
NlaIV	GGNNCC	4 cut(s)	23, 172, 189, 190
NmeAIII	GCCGAG	1 cut(s)	315
PdiI	GCCGGC	2 cut(s)	309, 353
PfeI	GAWTC	2 cut(s)	70, 152
PkrI	GCNGC	6 cut(s)	6, 59, 288, 306, 334, 357
PpuMI	RGGWCCY	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	296
Psp5II	RGGWCCY	1 cut(s)	188
PspN4I	GGNNCC	4 cut(s)	23, 172, 189, 190
PspPI	GGNCC	1 cut(s)	188
PspPPI	RGGWCCY	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	170
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	296
SatI	GCNGC	6 cut(s)	5, 58, 287, 305, 333, 356
Sau3AI	GATC	5 cut(s)	115, 170, 216, 249, 260
Sau96I	GGNCC	1 cut(s)	188
SduI	GDGCHC	2 cut(s)	26, 296
SetI	ASST	5 cut(s)	39, 185, 240, 296, 322
SfaNI	GCATC	1 cut(s)	235
SinI	GGWCC	1 cut(s)	188
SsiI	CCGC	5 cut(s)	57, 99, 284, 287, 302
SspMI	CTAG	1 cut(s)	27
SstI	GAGCTC	1 cut(s)	296
TaaI	ACNGT	2 cut(s)	205, 329
TaqI	TCGA	1 cut(s)	366
TauI	GCSGC	2 cut(s)	60, 289
TfiI	GAWTC	2 cut(s)	70, 152
TseI	GCWGC	4 cut(s)	4, 304, 332, 355
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	2 cut(s)	95, 191
VpaK11BI	GGWCC	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.