Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002748.1

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Reverse (-)

36485 .. 38414

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002748.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgttaagcttttggatcaactctgggatgctcattggatattgttgcttgcccttatataacgctcacttcaacgactgcaagacatggagagccaactccaccggcaactcctataccaccaccttgctcattggcggattggccatcgacgagagccctagccctaaccttgaccctacgctctggcgcggcgaggctttgaatccggcaacggaagatgagagagagggcagagttggaagagatgatcggaaggcgagggaggagagcgtggagtgttcggattcggatctggtgttaggatccacggacaggttgggacccgacccggagacggtgcagaagcagatcaaggttgcagagttcaaggtgatggatgcgatctacgctggatcgggggcttattatgcttctccgccgccgagctccattccgctgccggcttttttggctatgtacggtgcagcgaccagcaatctgcgccggctgctgcgtctcgatttggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

170

Amino Acids

18.62

Weight (kDa)

4.79

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	192
AciI	CCGC	5 cut(s)	138, 192, 419, 422, 437
AclWI	GGATC	5 cut(s)	23, 300, 300, 313, 403
AcoI	YGGCCR	1 cut(s)	144
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	2 cut(s)	315, 337
AgsI	TTSAA	3 cut(s)	73, 205, 370
AluBI	AGCT	2 cut(s)	9, 429
AluI	AGCT	2 cut(s)	9, 429
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	2 cut(s)	329, 503
AlwI	GGATC	5 cut(s)	23, 300, 300, 313, 403
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	4 cut(s)	439, 467, 490, 493
AspLEI	GCGC	2 cut(s)	192, 486
AspS9I	GGNCC	1 cut(s)	323
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	305
BanII	GRGCYC	2 cut(s)	161, 431
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	4 cut(s)	426, 477, 479, 480
BccI	CCATC	2 cut(s)	155, 370
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	2 cut(s)	329, 503
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	6 cut(s)	193, 422, 440, 468, 491, 494
BlsI	GCNGC	6 cut(s)	194, 423, 441, 469, 492, 495
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	3 cut(s)	307, 324, 325
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	2 cut(s)	18, 370
BpuMI	CCSGG	1 cut(s)	332
BsaBI	GATNNNNATC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 337
Bse118I	RCCGGY	3 cut(s)	104, 442, 486
Bse8I	GATNNNNATC	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	2 cut(s)	33, 385
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	315, 337
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	4 cut(s)	426, 477, 479, 480
BsgI	GTGCAG	2 cut(s)	362, 486
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	5 cut(s)	105, 209, 332, 443, 487
BslFI	GGGAC	1 cut(s)	336
BslI	CCNNNNNNNGG	2 cut(s)	315, 337
BsmAI	GTCTC	2 cut(s)	329, 503
BsmBI	CGTCTC	2 cut(s)	329, 503
BsmFI	GGGAC	1 cut(s)	336
BsnI	GGCC	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	161, 431
Bsp143I	GATC	7 cut(s)	15, 250, 292, 305, 351, 384, 395
BspACI	CCGC	5 cut(s)	138, 192, 419, 422, 437
BspANI	GGCC	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	3 cut(s)	307, 324, 325
BspPI	GGATC	5 cut(s)	23, 300, 300, 313, 403
BsrFI	RCCGGY	3 cut(s)	104, 442, 486
BssAI	RCCGGY	3 cut(s)	104, 442, 486
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	7 cut(s)	15, 250, 292, 305, 351, 384, 395
Bst4CI	ACNGT	2 cut(s)	340, 464
Bst6I	CTCTTC	1 cut(s)	238
BstC8I	GCNNGC	3 cut(s)	50, 444, 488
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	2 cut(s)	33, 385
BstFNI	CGCG	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	192, 486
BstKTI	GATC	7 cut(s)	18, 253, 295, 308, 354, 387, 398
BstMAI	GTCTC	2 cut(s)	329, 503
BstMBI	GATC	7 cut(s)	15, 250, 292, 305, 351, 384, 395
BstMWI	GCNNNNNNNGC	5 cut(s)	389, 410, 452, 483, 490
BstSCI	CCNGG	1 cut(s)	330
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	4 cut(s)	426, 477, 479, 480
BstX2I	RGATCY	2 cut(s)	292, 305
BstYI	RGATCY	2 cut(s)	292, 305
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	33, 385
Cac8I	GCNNGC	3 cut(s)	50, 444, 488
CfoI	GCGC	2 cut(s)	192, 486
Cfr10I	RCCGGY	3 cut(s)	104, 442, 486
Cfr13I	GGNCC	1 cut(s)	323
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	1 cut(s)	460
CviAII	CATG	1 cut(s)	87
CviQI	GTAC	1 cut(s)	460
DpnI	GATC	7 cut(s)	17, 252, 294, 307, 353, 386, 397
DpnII	GATC	7 cut(s)	15, 250, 292, 305, 351, 384, 395
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
EciI	GGCGGA	2 cut(s)	153, 408
Ecl136II	GAGCTC	1 cut(s)	429
Eco24I	GRGCYC	2 cut(s)	161, 431
Eco47I	GGWCC	1 cut(s)	323
Eco53kI	GAGCTC	1 cut(s)	429
EcoICRI	GAGCTC	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	323
EcoT38I	GRGCYC	2 cut(s)	161, 431
Esp3I	CGTCTC	2 cut(s)	329, 503
FaeI	CATG	1 cut(s)	90
FaiI	YATR	6 cut(s)	58, 60, 88, 117, 411, 458
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	1 cut(s)	86
Fnu4HI	GCNGC	6 cut(s)	193, 422, 440, 468, 491, 494
FokI	GGATG	2 cut(s)	40, 392
FriOI	GRGCYC	2 cut(s)	161, 431
Fsp4HI	GCNGC	6 cut(s)	193, 422, 440, 468, 491, 494
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	2 cut(s)	191, 485
GluI	GCNGC	6 cut(s)	193, 422, 440, 468, 491, 494
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	5 cut(s)	105, 209, 332, 443, 487
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	2 cut(s)	192, 486
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	2 cut(s)	190, 484
HinP1I	GCGC	2 cut(s)	190, 484
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	2 cut(s)	205, 287
HpaII	CCGG	5 cut(s)	105, 209, 332, 443, 487
HphI	GGTGA	1 cut(s)	385
Hpy188I	TCNGA	3 cut(s)	255, 286, 292
Hpy188III	TCNNGA	1 cut(s)	500
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	2 cut(s)	340, 464
HpyCH4V	TGCA	4 cut(s)	81, 343, 362, 467
HpyF10VI	GCNNNNNNNGC	5 cut(s)	389, 410, 452, 483, 490
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	2 cut(s)	190, 484
KflI	GGGWCCC	1 cut(s)	323
KroI	GCCGGC	2 cut(s)	442, 486
KroNI	GCCGGC	2 cut(s)	444, 488
Kzo9I	GATC	7 cut(s)	15, 250, 292, 305, 351, 384, 395
LmnI	GCTCC	1 cut(s)	434
Lsp1109I	GCAGC	4 cut(s)	426, 477, 479, 480
LweI	GCATC	2 cut(s)	18, 370
MaeI	CTAG	1 cut(s)	162
MalI	GATC	7 cut(s)	17, 252, 294, 307, 353, 386, 397
MboI	GATC	7 cut(s)	15, 250, 292, 305, 351, 384, 395
MboII	GAAGA	2 cut(s)	230, 255
MflI	RGATCY	2 cut(s)	292, 305
MhlI	GDGCHC	2 cut(s)	161, 431
MlsI	TGGCCA	1 cut(s)	146
MluNI	TGGCCA	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	4 cut(s)	190, 223, 255, 259
Mox20I	TGGCCA	1 cut(s)	146
MroNI	GCCGGC	2 cut(s)	442, 486
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	439
MspI	CCGG	5 cut(s)	105, 209, 332, 443, 487
MspR9I	CCNGG	1 cut(s)	332
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	5 cut(s)	389, 410, 452, 483, 490
NaeI	GCCGGC	2 cut(s)	444, 488
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	7 cut(s)	15, 250, 292, 305, 351, 384, 395
NgoMIV	GCCGGC	2 cut(s)	442, 486
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	3 cut(s)	307, 324, 325
NmeAIII	GCCGAG	1 cut(s)	450
PdiI	GCCGGC	2 cut(s)	444, 488
PfeI	GAWTC	2 cut(s)	205, 287
PkrI	GCNGC	6 cut(s)	194, 423, 441, 469, 492, 495
PpuMI	RGGWCCY	1 cut(s)	323
Psp124BI	GAGCTC	1 cut(s)	431
Psp5II	RGGWCCY	1 cut(s)	323
PspN4I	GGNNCC	3 cut(s)	307, 324, 325
PspPI	GGNCC	1 cut(s)	323
PspPPI	RGGWCCY	1 cut(s)	323
PsuI	RGATCY	2 cut(s)	292, 305
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SacI	GAGCTC	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	6 cut(s)	193, 422, 440, 468, 491, 494
Sau3AI	GATC	7 cut(s)	15, 250, 292, 305, 351, 384, 395
Sau96I	GGNCC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	2 cut(s)	161, 431
SetI	ASST	7 cut(s)	11, 128, 174, 320, 360, 375, 431
SfaNI	GCATC	2 cut(s)	18, 370
SinI	GGWCC	1 cut(s)	323
SsiI	CCGC	5 cut(s)	138, 192, 419, 422, 437
SspMI	CTAG	1 cut(s)	162
SstI	GAGCTC	1 cut(s)	431
StyD4I	CCNGG	1 cut(s)	330
TaaI	ACNGT	2 cut(s)	340, 464
TaqI	TCGA	2 cut(s)	150, 501
TauI	GCSGC	2 cut(s)	195, 424
TfiI	GAWTC	2 cut(s)	205, 287
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TseI	GCWGC	4 cut(s)	439, 467, 490, 493
TspGWI	ACGGA	2 cut(s)	230, 326
VpaK11BI	GGWCC	1 cut(s)	323
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.