Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Reverse (-)

55414289 .. 55414591

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG426000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTTGGGACCTGACCCGGAGACGGTGCAGAAGCAGATCAAGGTTGCAGAGTTCAAGGTGATGGATGCGATCTACGCTGGATCGGGGGCTTATTATGCTTCTCCGCCGCCGAGCTCCATTCCGCTGCCGGCTTTTTTGGCTAATTACGGTGCAGCGACCAGCAATCTGCGCCGGCTGCTGTGTCTCGATTTTGGTGTGAACACGTGGCCCTCCGACGATGATCGGAGAGTGACCGGAAGGCTGATCCTGCTTGGTTGTTTGATCGGATGGCGGAGACGGTGGAGGATTGAAATTAGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

100

Amino Acids

11.08

Weight (kDa)

9.14

Isoelectric Point (pI)

68.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	104, 107, 122, 271
AclWI	GGATC	2 cut(s)	88, 238
AcvI	CACGTG	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	55, 290
AluBI	AGCT	1 cut(s)	114
AluI	AGCT	1 cut(s)	114
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	3 cut(s)	14, 188, 268
AlwI	GGATC	2 cut(s)	88, 238
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	3 cut(s)	124, 152, 175
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	8, 207
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	116
BbrPI	CACGTG	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	3 cut(s)	111, 162, 164
BccI	CCATC	2 cut(s)	55, 261
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	3 cut(s)	14, 188, 268
BisI	GCNGC	4 cut(s)	107, 125, 153, 176
BlsI	GCNGC	4 cut(s)	108, 126, 154, 177
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	2 cut(s)	8, 207
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	17
BsaAI	YACGTR	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	2 cut(s)	127, 171
BseGI	GGATG	2 cut(s)	70, 272
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseXI	GCAGC	3 cut(s)	111, 162, 164
BsgI	GTGCAG	2 cut(s)	47, 171
BshFI	GGCC	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	4 cut(s)	17, 128, 172, 234
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	3 cut(s)	14, 188, 268
BsmBI	CGTCTC	2 cut(s)	14, 268
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	6 cut(s)	36, 69, 80, 220, 243, 261
BspACI	CCGC	4 cut(s)	104, 107, 122, 271
BspANI	GGCC	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	2 cut(s)	88, 238
BsrFI	RCCGGY	2 cut(s)	127, 171
BssAI	RCCGGY	2 cut(s)	127, 171
BssMI	GATC	6 cut(s)	36, 69, 80, 220, 243, 261
Bst4CI	ACNGT	3 cut(s)	25, 149, 279
BstBAI	YACGTR	1 cut(s)	204
BstC8I	GCNNGC	2 cut(s)	129, 173
BstF5I	GGATG	2 cut(s)	70, 272
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	6 cut(s)	39, 72, 83, 223, 246, 264
BstMAI	GTCTC	3 cut(s)	14, 188, 268
BstMBI	GATC	6 cut(s)	36, 69, 80, 220, 243, 261
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 95, 137, 168, 175, 247
BstSCI	CCNGG	1 cut(s)	15
BstV1I	GCAGC	3 cut(s)	111, 162, 164
BsuRI	GGCC	1 cut(s)	208
BtsCI	GGATG	2 cut(s)	70, 272
Cac8I	GCNNGC	2 cut(s)	129, 173
CfoI	GCGC	1 cut(s)	171
Cfr10I	RCCGGY	2 cut(s)	127, 171
Cfr13I	GGNCC	2 cut(s)	8, 207
CviJI	RGCY	8 cut(s)	89, 114, 131, 140, 175, 208, 241, 300
CviKI_1	RGCY	8 cut(s)	89, 114, 131, 140, 175, 208, 241, 300
DpnI	GATC	6 cut(s)	38, 71, 82, 222, 245, 263
DpnII	GATC	6 cut(s)	36, 69, 80, 220, 243, 261
EciI	GGCGGA	2 cut(s)	93, 286
Ecl136II	GAGCTC	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	114
Eco72I	CACGTG	1 cut(s)	204
EcoICRI	GAGCTC	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	8
EcoT38I	GRGCYC	1 cut(s)	116
Esp3I	CGTCTC	2 cut(s)	14, 268
FaiI	YATR	1 cut(s)	96
FaqI	GGGAC	1 cut(s)	21
Fnu4HI	GCNGC	4 cut(s)	107, 125, 153, 176
FokI	GGATG	2 cut(s)	77, 279
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	4 cut(s)	107, 125, 153, 176
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	4 cut(s)	107, 125, 153, 176
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	4 cut(s)	17, 128, 172, 234
HhaI	GCGC	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HpaII	CCGG	4 cut(s)	17, 128, 172, 234
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	3 cut(s)	214, 225, 266
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	231
HpyCH4III	ACNGT	3 cut(s)	25, 149, 279
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	3 cut(s)	28, 47, 152
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 95, 137, 168, 175, 247
HpySE526I	ACGT	1 cut(s)	203
HspAI	GCGC	1 cut(s)	169
KroI	GCCGGC	2 cut(s)	127, 171
KroNI	GCCGGC	2 cut(s)	129, 173
Kzo9I	GATC	6 cut(s)	36, 69, 80, 220, 243, 261
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	8 cut(s)	24, 30, 63, 141, 172, 185, 247, 260
Lsp1109I	GCAGC	3 cut(s)	111, 162, 164
LweI	GCATC	1 cut(s)	55
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	6 cut(s)	38, 71, 82, 222, 245, 263
MboI	GATC	6 cut(s)	36, 69, 80, 220, 243, 261
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	2 cut(s)	142, 291
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	2 cut(s)	220, 276
MroNI	GCCGGC	2 cut(s)	127, 171
MspA1I	CMGCKG	1 cut(s)	124
MspI	CCGG	4 cut(s)	17, 128, 172, 234
MspR9I	CCNGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	6 cut(s)	74, 95, 137, 168, 175, 247
NaeI	GCCGGC	2 cut(s)	129, 173
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	6 cut(s)	36, 69, 80, 220, 243, 261
NgoMIV	GCCGGC	2 cut(s)	127, 171
NlaIV	GGNNCC	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	229
PdiI	GCCGGC	2 cut(s)	129, 173
PkrI	GCNGC	4 cut(s)	108, 126, 154, 177
PmaCI	CACGTG	1 cut(s)	204
PmlI	CACGTG	1 cut(s)	204
Ppu21I	YACGTR	1 cut(s)	204
PpuMI	RGGWCCY	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	8
PspCI	CACGTG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	2 cut(s)	8, 207
PspPPI	RGGWCCY	1 cut(s)	8
SacI	GAGCTC	1 cut(s)	116
SatI	GCNGC	4 cut(s)	107, 125, 153, 176
Sau3AI	GATC	6 cut(s)	36, 69, 80, 220, 243, 261
Sau96I	GGNCC	2 cut(s)	8, 207
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	5 cut(s)	13, 45, 60, 116, 206
SfaNI	GCATC	1 cut(s)	55
SinI	GGWCC	1 cut(s)	8
Sse9I	AATT	2 cut(s)	142, 291
SsiI	CCGC	4 cut(s)	104, 107, 122, 271
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	15
TaaI	ACNGT	3 cut(s)	25, 149, 279
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	142, 291
TauI	GCSGC	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	3 cut(s)	124, 152, 175
Tsp45I	GTSAC	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.