Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Forward (+)

21494229 .. 21495597

Gene Structure 1369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017803

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAACAGACAAAAGCACACAACTTCCGATTGTGCAGGAGCCCTAGCCCTAACCTTGACCCTACACTCCGGCGCGGCGAGGCTTTGAATCGGGCAACGGAAGATGAGAGAGAGGGCGGAGTTGGAAGAGATGATCAGAAGGCGAGGGAGGAGAGCGTGGAGTGTTCGGATTCGGATCTGGTGTTGGGATCCACGGACAGGTTGGGACCCGACCCGGAGACGGTGCAGAAGCAGATCAAGGTTGCAGAGTTAAAGTACGGTGCAGCGACCAGTAATCTGCGCCGGCTGCTGCGTCTCGATTGGGGAGGCCAATGCATCAACCAGATTGGAGCCAAGGTCTGGGAGGTTGTCTATGCCAAGCACGACATCGACCACACTGAACACAACACCAACGACTCCAGCTCCAACTTCAGAGAGTCAACGTCTACTACAACAAAGTCAGTGGCGAAAGGTATGATCCACGCGTCGTCATCTTCGATATGGAGCCAGGAACCATGGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

168

Amino Acids

18.63

Weight (kDa)

5.75

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	425
AccII	CGCG	2 cut(s)	75, 464
AciI	CCGC	2 cut(s)	75, 117
AclWI	GGATC	4 cut(s)	183, 183, 196, 451
AcuI	CTGAAG	1 cut(s)	394
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	3 cut(s)	198, 220, 339
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	486
AluBI	AGCT	1 cut(s)	402
AluI	AGCT	1 cut(s)	402
Alw26I	GTCTC	2 cut(s)	212, 299
AlwI	GGATC	4 cut(s)	183, 183, 196, 451
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	3 cut(s)	263, 286, 289
AspLEI	GCGC	2 cut(s)	75, 282
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	44
BbvI	GCAGC	3 cut(s)	273, 275, 276
BciT130I	CCWGG	1 cut(s)	488
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	212, 299
BfaI	CTAG	1 cut(s)	45
BisI	GCNGC	4 cut(s)	76, 264, 287, 290
BlsI	GCNGC	4 cut(s)	77, 265, 288, 291
Bme1390I	CCNGG	2 cut(s)	215, 488
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	7 cut(s)	41, 190, 207, 208, 331, 485, 492
BmrFI	CCNGG	2 cut(s)	215, 488
BmsI	GCATC	1 cut(s)	324
BpmI	CTGGAG	1 cut(s)	382
BpuMI	CCSGG	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	192, 333, 494
BsaXI	ACNNNNNCTCC	4 cut(s)	321, 351, 386, 416
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 220, 339
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	3 cut(s)	192, 333, 494
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	3 cut(s)	198, 220, 339
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	3 cut(s)	273, 275, 276
BsgI	GTGCAG	3 cut(s)	55, 245, 282
Bsh1236I	CGCG	2 cut(s)	75, 464
BshFI	GGCC	1 cut(s)	309
BsiSI	CCGG	3 cut(s)	70, 215, 283
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	3 cut(s)	198, 220, 339
BsmAI	GTCTC	2 cut(s)	212, 299
BsmBI	CGTCTC	2 cut(s)	212, 299
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	5 cut(s)	133, 175, 188, 234, 456
Bsp19I	CCATGG	1 cut(s)	494
BspACI	CCGC	2 cut(s)	75, 117
BspANI	GGCC	1 cut(s)	309
BspFNI	CGCG	2 cut(s)	75, 464
BspLI	GGNNCC	7 cut(s)	41, 190, 207, 208, 331, 485, 492
BspPI	GGATC	4 cut(s)	183, 183, 196, 451
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	270
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	3 cut(s)	192, 333, 494
BssMI	GATC	5 cut(s)	133, 175, 188, 234, 456
BssT1I	CCWWGG	2 cut(s)	333, 494
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	2 cut(s)	223, 260
Bst6I	CTCTTC	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	284
BstDSI	CCRYGG	2 cut(s)	192, 494
BstFNI	CGCG	2 cut(s)	75, 464
BstHHI	GCGC	2 cut(s)	75, 282
BstKTI	GATC	5 cut(s)	136, 178, 191, 237, 459
BstMAI	GTCTC	2 cut(s)	212, 299
BstMBI	GATC	5 cut(s)	133, 175, 188, 234, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNI	CCWGG	1 cut(s)	488
BstSCI	CCNGG	2 cut(s)	213, 486
BstUI	CGCG	2 cut(s)	75, 464
BstV1I	GCAGC	3 cut(s)	273, 275, 276
BstX2I	RGATCY	2 cut(s)	175, 188
BstYI	RGATCY	2 cut(s)	175, 188
BsuRI	GGCC	1 cut(s)	309
BtgI	CCRYGG	2 cut(s)	192, 494
BtsIMutI	CAGTG	2 cut(s)	375, 447
Cac8I	GCNNGC	1 cut(s)	284
CfoI	GCGC	2 cut(s)	75, 282
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	206
CseI	GACGC	2 cut(s)	281, 453
Csp6I	GTAC	1 cut(s)	256
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	1 cut(s)	495
CviJI	RGCY	8 cut(s)	42, 48, 83, 286, 309, 332, 402, 486
CviKI_1	RGCY	8 cut(s)	42, 48, 83, 286, 309, 332, 402, 486
CviQI	GTAC	1 cut(s)	256
DpnI	GATC	5 cut(s)	135, 177, 190, 236, 458
DpnII	GATC	5 cut(s)	133, 175, 188, 234, 456
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	333, 494
Eco24I	GRGCYC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	486
EcoT14I	CCWWGG	2 cut(s)	333, 494
EcoT22I	ATGCAT	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	44
ErhI	CCWWGG	2 cut(s)	333, 494
Esp3I	CGTCTC	2 cut(s)	212, 299
FaeI	CATG	1 cut(s)	498
FaiI	YATR	5 cut(s)	354, 455, 481, 496, 502
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	1 cut(s)	494
FbaI	TGATCA	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	4 cut(s)	76, 264, 287, 290
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	4 cut(s)	76, 264, 287, 290
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	2 cut(s)	74, 281
GluI	GCNGC	4 cut(s)	76, 264, 287, 290
GsuI	CTGGAG	1 cut(s)	382
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	3 cut(s)	70, 215, 283
HgaI	GACGC	2 cut(s)	281, 453
HhaI	GCGC	2 cut(s)	75, 282
Hin1II	CATG	1 cut(s)	498
Hin6I	GCGC	2 cut(s)	73, 280
HinP1I	GCGC	2 cut(s)	73, 280
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HinfI	GANTC	4 cut(s)	88, 170, 395, 416
HpaII	CCGG	3 cut(s)	70, 215, 283
Hpy166II	GTNNAC	2 cut(s)	420, 426
Hpy188I	TCNGA	5 cut(s)	29, 138, 169, 175, 413
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	2 cut(s)	420, 426
Hpy99I	CGWCG	1 cut(s)	469
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	2 cut(s)	223, 260
HpyCH4IV	ACGT	1 cut(s)	422
HpyCH4V	TGCA	5 cut(s)	36, 226, 245, 263, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpySE526I	ACGT	1 cut(s)	422
Hsp92II	CATG	1 cut(s)	498
HspAI	GCGC	2 cut(s)	73, 280
KflI	GGGWCCC	1 cut(s)	206
KroI	GCCGGC	1 cut(s)	282
KroNI	GCCGGC	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	5 cut(s)	133, 175, 188, 234, 456
LmnI	GCTCC	4 cut(s)	39, 329, 407, 483
Lsp1109I	GCAGC	3 cut(s)	273, 275, 276
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	422
MalI	GATC	5 cut(s)	135, 177, 190, 236, 458
MboI	GATC	5 cut(s)	133, 175, 188, 234, 456
MboII	GAAGA	3 cut(s)	113, 138, 465
MflI	RGATCY	2 cut(s)	175, 188
MhlI	GDGCHC	1 cut(s)	44
MluI	ACGCGT	1 cut(s)	462
MlyI	GAGTC	2 cut(s)	389, 425
MmeI	TCCRAC	2 cut(s)	103, 429
MnlI	CCTC	6 cut(s)	73, 106, 138, 142, 299, 337
Mph1103I	ATGCAT	1 cut(s)	317
MroNI	GCCGGC	1 cut(s)	282
MseI	TTAA	1 cut(s)	251
MspI	CCGG	3 cut(s)	70, 215, 283
MspR9I	CCNGG	2 cut(s)	215, 488
MvaI	CCWGG	1 cut(s)	488
MvnI	CGCG	2 cut(s)	75, 464
MwoI	GCNNNNNNNGC	1 cut(s)	286
NaeI	GCCGGC	1 cut(s)	284
NciI	CCSGG	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	494
NdeII	GATC	5 cut(s)	133, 175, 188, 234, 456
NgoMIV	GCCGGC	1 cut(s)	282
NlaIII	CATG	1 cut(s)	498
NlaIV	GGNNCC	7 cut(s)	41, 190, 207, 208, 331, 485, 492
NsiI	ATGCAT	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	473
PdiI	GCCGGC	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	88, 170
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	4 cut(s)	77, 265, 288, 291
PleI	GAGTC	2 cut(s)	389, 424
PpsI	GAGTC	2 cut(s)	389, 424
PpuMI	RGGWCCY	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	486
PspN4I	GGNNCC	7 cut(s)	41, 190, 207, 208, 331, 485, 492
PspPI	GGNCC	1 cut(s)	206
PspPPI	RGGWCCY	1 cut(s)	206
PsuI	RGATCY	2 cut(s)	175, 188
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	4 cut(s)	76, 264, 287, 290
Sau3AI	GATC	5 cut(s)	133, 175, 188, 234, 456
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	2 cut(s)	389, 425
ScrFI	CCNGG	2 cut(s)	215, 488
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	8 cut(s)	57, 203, 243, 339, 348, 404, 425, 454
SfaNI	GCATC	1 cut(s)	324
SinI	GGWCC	1 cut(s)	206
SsiI	CCGC	2 cut(s)	75, 117
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	213, 486
StyI	CCWWGG	2 cut(s)	333, 494
TaaI	ACNGT	2 cut(s)	223, 260
TaiI	ACGT	1 cut(s)	425
TaqI	TCGA	3 cut(s)	297, 369, 476
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	2 cut(s)	88, 170
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	2 cut(s)	382, 447
TseI	GCWGC	3 cut(s)	263, 286, 289
TspGWI	ACGGA	2 cut(s)	113, 209
TspRI	CASTG	2 cut(s)	382, 447
Van91I	CCANNNNNTGG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	425
XspI	CTAG	1 cut(s)	45
Zsp2I	ATGCAT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.