Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Reverse (-)

18937242 .. 18937961

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032774

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGACAGTTTGCAATCCCATAATATCTGCATCTCCTAAACATTTTACGGAGAGACAAGCCAAGCTAATGAACATGGATATTTCATACCCCCATAAACTACAGAACTCAAAAGAAGAACAGAAAAATAGAGTATCTGCAGAACCAAATCACCATAAGATTAACAGGGGATTTGCTCAGAGCCCTAGCCCTACGCTCCGGCGCAGCGAGGCTTTGAATCCGACAACGGAAGATGAGAGAGAGGGCGGAGTTGGAAGAGATGATCGGAAGGCGAGAGAGGAGAGCGTGGAGTGTTCGGATTCGGATCTGGTGTTGGGATCCACGGACAGGTTAGGACCCGACCTGGAGACGGTGCAGAAGCAGATCAAGGTTGCAGAGTTCAAGGTGATGGATGCGATCTACGCTGGATCGGGGGCTTATTATGCTTCTCCGCCACCGAGCTCCATTCTGCTGCCGGCTTTTTTGGCTAAGTACGGTGCAGCGACCAGCAATCTGCGCCGGCTGCTGCGTCTCGATTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

174

Amino Acids

19.18

Weight (kDa)

7.78

Isoelectric Point (pI)

62.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	243, 428
AclWI	GGATC	4 cut(s)	309, 309, 322, 412
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	2 cut(s)	324, 346
AgsI	TTSAA	2 cut(s)	214, 379
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	2 cut(s)	64, 438
AluI	AGCT	2 cut(s)	64, 438
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	3 cut(s)	46, 338, 512
AlwI	GGATC	4 cut(s)	309, 309, 322, 412
ApeKI	GCWGC	5 cut(s)	201, 448, 476, 499, 502
AspLEI	GCGC	2 cut(s)	201, 495
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	2 cut(s)	140, 394
AvaII	GGWCC	1 cut(s)	332
BamHI	GGATCC	1 cut(s)	314
BanII	GRGCYC	2 cut(s)	182, 440
Bbv12I	GWGCWC	1 cut(s)	440
BbvI	GCAGC	5 cut(s)	213, 435, 486, 488, 489
BccI	CCATC	1 cut(s)	379
BciT130I	CCWGG	1 cut(s)	341
BcoDI	GTCTC	3 cut(s)	46, 338, 512
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	2 cut(s)	98, 135
BisI	GCNGC	5 cut(s)	202, 449, 477, 500, 503
BlsI	GCNGC	5 cut(s)	203, 450, 478, 501, 504
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	2 cut(s)	316, 334
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	2 cut(s)	38, 379
BpmI	CTGGAG	1 cut(s)	362
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 346
Bse118I	RCCGGY	2 cut(s)	451, 495
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	394
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	324, 346
BseMII	CTCAG	1 cut(s)	188
BseRI	GAGGAG	1 cut(s)	290
BseXI	GCAGC	5 cut(s)	213, 435, 486, 488, 489
BsgI	GTGCAG	2 cut(s)	371, 495
BsiHKAI	GWGCWC	1 cut(s)	440
BsiSI	CCGG	3 cut(s)	196, 452, 496
BslI	CCNNNNNNNGG	2 cut(s)	324, 346
BsmAI	GTCTC	3 cut(s)	46, 338, 512
BsmBI	CGTCTC	2 cut(s)	338, 512
Bsp1286I	GDGCHC	2 cut(s)	182, 440
Bsp143I	GATC	6 cut(s)	259, 301, 314, 360, 393, 404
BspACI	CCGC	2 cut(s)	243, 428
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	316, 334
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	4 cut(s)	309, 309, 322, 412
BsrFI	RCCGGY	2 cut(s)	451, 495
BssAI	RCCGGY	2 cut(s)	451, 495
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	6 cut(s)	259, 301, 314, 360, 393, 404
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	3 cut(s)	7, 349, 473
Bst6I	CTCTTC	1 cut(s)	247
BstC8I	GCNNGC	2 cut(s)	453, 497
BstDEI	CTNAG	2 cut(s)	174, 465
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	394
BstHHI	GCGC	2 cut(s)	201, 495
BstKTI	GATC	6 cut(s)	262, 304, 317, 363, 396, 407
BstMAI	GTCTC	3 cut(s)	46, 338, 512
BstMBI	GATC	6 cut(s)	259, 301, 314, 360, 393, 404
BstMWI	GCNNNNNNNGC	5 cut(s)	398, 419, 461, 492, 499
BstNI	CCWGG	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	339
BstSFI	CTRYAG	2 cut(s)	98, 135
BstV1I	GCAGC	5 cut(s)	213, 435, 486, 488, 489
BstX2I	RGATCY	2 cut(s)	301, 314
BstYI	RGATCY	2 cut(s)	301, 314
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	394
Cac8I	GCNNGC	2 cut(s)	453, 497
CfoI	GCGC	2 cut(s)	201, 495
Cfr10I	RCCGGY	2 cut(s)	451, 495
Cfr13I	GGNCC	1 cut(s)	332
CseI	GACGC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	1 cut(s)	73
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	2 cut(s)	174, 465
DpnI	GATC	6 cut(s)	261, 303, 316, 362, 395, 406
DpnII	GATC	6 cut(s)	259, 301, 314, 360, 393, 404
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
EciI	GGCGGA	2 cut(s)	258, 417
Ecl136II	GAGCTC	1 cut(s)	438
Eco24I	GRGCYC	2 cut(s)	182, 440
Eco47I	GGWCC	1 cut(s)	332
Eco53kI	GAGCTC	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	438
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	339
EcoT38I	GRGCYC	2 cut(s)	182, 440
Esp3I	CGTCTC	2 cut(s)	338, 512
FaeI	CATG	1 cut(s)	76
FaiI	YATR	6 cut(s)	20, 74, 85, 93, 153, 420
FatI	CATG	1 cut(s)	72
Fnu4HI	GCNGC	5 cut(s)	202, 449, 477, 500, 503
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	2 cut(s)	182, 440
Fsp4HI	GCNGC	5 cut(s)	202, 449, 477, 500, 503
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	2 cut(s)	200, 494
GluI	GCNGC	5 cut(s)	202, 449, 477, 500, 503
GsuI	CTGGAG	1 cut(s)	362
HapII	CCGG	3 cut(s)	196, 452, 496
HgaI	GACGC	1 cut(s)	494
HhaI	GCGC	2 cut(s)	201, 495
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	2 cut(s)	199, 493
HinP1I	GCGC	2 cut(s)	199, 493
HinfI	GANTC	2 cut(s)	214, 296
HpaII	CCGG	3 cut(s)	196, 452, 496
HphI	GGTGA	2 cut(s)	140, 394
Hpy188I	TCNGA	5 cut(s)	177, 219, 264, 295, 301
Hpy188III	TCNNGA	1 cut(s)	509
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	3 cut(s)	7, 349, 473
HpyCH4V	TGCA	6 cut(s)	12, 29, 137, 352, 371, 476
HpyF10VI	GCNNNNNNNGC	5 cut(s)	398, 419, 461, 492, 499
HpyF3I	CTNAG	2 cut(s)	174, 465
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	2 cut(s)	199, 493
KroI	GCCGGC	2 cut(s)	451, 495
KroNI	GCCGGC	2 cut(s)	453, 497
Kzo9I	GATC	6 cut(s)	259, 301, 314, 360, 393, 404
LmnI	GCTCC	2 cut(s)	198, 443
Lsp1109I	GCAGC	5 cut(s)	213, 435, 486, 488, 489
LweI	GCATC	2 cut(s)	38, 379
MaeI	CTAG	1 cut(s)	183
MalI	GATC	6 cut(s)	261, 303, 316, 362, 395, 406
MboI	GATC	6 cut(s)	259, 301, 314, 360, 393, 404
MboII	GAAGA	3 cut(s)	125, 239, 264
MflI	RGATCY	2 cut(s)	301, 314
MhlI	GDGCHC	2 cut(s)	182, 440
MmeI	TCCRAC	2 cut(s)	229, 242
MnlI	CCTC	3 cut(s)	199, 232, 268
MroNI	GCCGGC	2 cut(s)	451, 495
MseI	TTAA	1 cut(s)	159
MspI	CCGG	3 cut(s)	196, 452, 496
MspR9I	CCNGG	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	341
MwoI	GCNNNNNNNGC	5 cut(s)	398, 419, 461, 492, 499
NaeI	GCCGGC	2 cut(s)	453, 497
NdeII	GATC	6 cut(s)	259, 301, 314, 360, 393, 404
NgoMIV	GCCGGC	2 cut(s)	451, 495
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	2 cut(s)	316, 334
PdiI	GCCGGC	2 cut(s)	453, 497
PfeI	GAWTC	2 cut(s)	214, 296
PkrI	GCNGC	5 cut(s)	203, 450, 478, 501, 504
PpuMI	RGGWCCY	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	316, 334
PspPI	GGNCC	1 cut(s)	332
PspPPI	RGGWCCY	1 cut(s)	332
PstI	CTGCAG	1 cut(s)	139
PsuI	RGATCY	2 cut(s)	301, 314
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SacI	GAGCTC	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	5 cut(s)	202, 449, 477, 500, 503
Sau3AI	GATC	6 cut(s)	259, 301, 314, 360, 393, 404
Sau96I	GGNCC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	2 cut(s)	182, 440
SetI	ASST	6 cut(s)	66, 329, 342, 369, 384, 440
SfaNI	GCATC	2 cut(s)	38, 379
SfcI	CTRYAG	2 cut(s)	98, 135
SinI	GGWCC	1 cut(s)	332
SsiI	CCGC	2 cut(s)	243, 428
SspMI	CTAG	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	440
StyD4I	CCNGG	1 cut(s)	339
TaaI	ACNGT	3 cut(s)	7, 349, 473
TaqI	TCGA	1 cut(s)	510
TfiI	GAWTC	2 cut(s)	214, 296
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseI	GCWGC	5 cut(s)	201, 448, 476, 499, 502
TspDTI	ATGAA	2 cut(s)	72, 83
TspGWI	ACGGA	3 cut(s)	62, 239, 335
VpaK11BI	GGWCC	1 cut(s)	332
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.