Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Forward (+)

1254962 .. 1255573

Gene Structure 612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015761

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGGACGGCGATTCTCCGATCACAGGATTGTCTTCGAGGTCGTTTCCGCCACGAAGCCCTTGCCCTAACCTTGACCTCACGCTCCGGATCGCGCCGGAGCCCCAATTTTTCTAACCCTAACCCTAACCCTAACCCTAACCCCGGCTCTAATGGCTCGCAGTCTCGCCGCCGGAAGAGGAGTCCGGTCGGCGTTCAATCCAATCAACGCGATCGGTGCGGCGATCGGATGGTGGCGAAGGTTCCGGGGAAGAACTTGGTGATGGGGCAGGTGAAGATCCTGAGGCGCGGCGAGGCGTTGAATCCGGCGACGGAAGATAAGAGAGTGGCCGGAGTTGGTGGTCGAGATGATCGGAAGGTGAGGGAGGAGAGCGTGGAGTGTACGGATTCGGATCTGGTGTTGGGATCCACGGATCGGTTGGGACCCGACCCGGAGACGGTGCAGAAGCAGATCAAGGTTGCAGAGTTCAAGGTGATGGATGCGATGTACGCTGGATCGGGAGCTTATTATGCTTCTCCGCCGCCGAGCTCCGTTCCGTTGCCGGCTTTTTTGGCTAAGAACGGAGCGGCGACTAGCGATCTGCGAAGGCTGCTGCGTCTCGATTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

204

Amino Acids

22.05

Weight (kDa)

10.3

Isoelectric Point (pI)

73.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	259
Acc36I	ACCTGC	1 cut(s)	259
AccBSI	CCGCTC	1 cut(s)	566
AccII	CGCG	3 cut(s)	94, 210, 288
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	7 cut(s)	49, 169, 219, 288, 518, 521, 566
AclWI	GGATC	7 cut(s)	97, 271, 399, 399, 412, 420, 502
AcoI	YGGCCR	1 cut(s)	327
AfaI	GTAC	2 cut(s)	382, 488
AfiI	CCNNNNNNNGG	4 cut(s)	25, 143, 414, 436
AgsI	TTSAA	3 cut(s)	197, 301, 469
AluBI	AGCT	2 cut(s)	503, 528
AluI	AGCT	2 cut(s)	503, 528
Alw21I	GWGCWC	1 cut(s)	530
Alw26I	GTCTC	3 cut(s)	168, 428, 602
AlwI	GGATC	7 cut(s)	97, 271, 399, 399, 412, 420, 502
Aor13HI	TCCGGA	1 cut(s)	86
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	2 cut(s)	589, 592
AspLEI	GCGC	2 cut(s)	96, 288
AspS9I	GGNCC	1 cut(s)	422
AsuC2I	CCSGG	3 cut(s)	144, 246, 431
AsuHPI	GGTGA	4 cut(s)	271, 283, 370, 484
AvaII	GGWCC	1 cut(s)	422
AxyI	CCTNAGG	1 cut(s)	281
BamHI	GGATCC	1 cut(s)	404
BanII	GRGCYC	2 cut(s)	104, 530
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	530
BbvI	GCAGC	2 cut(s)	576, 579
BccI	CCATC	3 cut(s)	223, 256, 469
BceAI	ACGGC	1 cut(s)	24
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BcnI	CCSGG	3 cut(s)	144, 246, 431
BcoDI	GTCTC	3 cut(s)	168, 428, 602
BfaI	CTAG	1 cut(s)	573
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	7 cut(s)	169, 220, 289, 521, 567, 590, 593
BlsI	GCNGC	7 cut(s)	170, 221, 290, 522, 568, 591, 594
Bme1390I	CCNGG	3 cut(s)	144, 246, 431
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	5 cut(s)	101, 243, 406, 423, 424
BmrFI	CCNGG	3 cut(s)	144, 246, 431
BmsI	GCATC	1 cut(s)	469
BpiI	GAAGAC	1 cut(s)	26
BpuMI	CCSGG	3 cut(s)	144, 246, 431
BsaBI	GATNNNNATC	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	142, 245, 408
BsaWI	WCCGGW	2 cut(s)	86, 184
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 143, 414, 436
Bse118I	RCCGGY	1 cut(s)	541
Bse21I	CCTNAGG	1 cut(s)	281
Bse8I	GATNNNNATC	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	86
BseDI	CCNNGG	3 cut(s)	142, 245, 408
BseGI	GGATG	2 cut(s)	234, 484
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	4 cut(s)	25, 143, 414, 436
BseMII	CTCAG	1 cut(s)	272
BseRI	GAGGAG	2 cut(s)	193, 380
BseXI	GCAGC	2 cut(s)	576, 579
BsgI	GTGCAG	1 cut(s)	461
Bsh1236I	CGCG	3 cut(s)	94, 210, 288
Bsh1285I	CGRYCG	3 cut(s)	189, 214, 226
BshFI	GGCC	1 cut(s)	329
BsiEI	CGRYCG	3 cut(s)	189, 214, 226
BsiHKAI	GWGCWC	1 cut(s)	530
BslFI	GGGAC	2 cut(s)	19, 435
BslI	CCNNNNNNNGG	4 cut(s)	25, 143, 414, 436
BsmAI	GTCTC	3 cut(s)	168, 428, 602
BsmBI	CGTCTC	2 cut(s)	428, 602
BsmFI	GGGAC	2 cut(s)	19, 435
BsnI	GGCC	1 cut(s)	329
Bsp1286I	GDGCHC	2 cut(s)	104, 530
Bsp13I	TCCGGA	1 cut(s)	86
BspACI	CCGC	7 cut(s)	49, 169, 219, 288, 518, 521, 566
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	273
BspEI	TCCGGA	1 cut(s)	86
BspFNI	CGCG	3 cut(s)	94, 210, 288
BspLI	GGNNCC	5 cut(s)	101, 243, 406, 423, 424
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	7 cut(s)	97, 271, 399, 399, 412, 420, 502
BsrBI	CCGCTC	1 cut(s)	566
BsrFI	RCCGGY	1 cut(s)	541
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	3 cut(s)	142, 245, 408
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	158, 543
BstDEI	CTNAG	2 cut(s)	281, 555
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	2 cut(s)	234, 484
BstFNI	CGCG	3 cut(s)	94, 210, 288
BstHHI	GCGC	2 cut(s)	96, 288
BstMAI	GTCTC	3 cut(s)	168, 428, 602
BstMCI	CGRYCG	3 cut(s)	189, 214, 226
BstMWI	GCNNNNNNNGC	6 cut(s)	153, 216, 488, 509, 551, 589
BstSCI	CCNGG	3 cut(s)	142, 244, 429
BstUI	CGCG	3 cut(s)	94, 210, 288
BstV1I	GCAGC	2 cut(s)	576, 579
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	3 cut(s)	276, 391, 404
BstYI	RGATCY	3 cut(s)	276, 391, 404
Bsu36I	CCTNAGG	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	408
BtgZI	GCGATG	1 cut(s)	497
BtsCI	GGATG	2 cut(s)	234, 484
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	2 cut(s)	158, 543
CfoI	GCGC	2 cut(s)	96, 288
Cfr10I	RCCGGY	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	422
CseI	GACGC	1 cut(s)	584
Csp6I	GTAC	2 cut(s)	381, 487
CviQI	GTAC	2 cut(s)	381, 487
DdeI	CTNAG	2 cut(s)	281, 555
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
EciI	GGCGGA	2 cut(s)	38, 507
Ecl136II	GAGCTC	1 cut(s)	528
Eco24I	GRGCYC	2 cut(s)	104, 530
Eco47I	GGWCC	1 cut(s)	422
Eco53kI	GAGCTC	1 cut(s)	528
Eco81I	CCTNAGG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	528
EcoO109I	RGGNCCY	1 cut(s)	422
EcoT38I	GRGCYC	2 cut(s)	104, 530
Esp3I	CGTCTC	2 cut(s)	428, 602
FaiI	YATR	1 cut(s)	510
FaqI	GGGAC	2 cut(s)	19, 435
Fnu4HI	GCNGC	7 cut(s)	169, 220, 289, 521, 567, 590, 593
FokI	GGATG	2 cut(s)	241, 491
FriOI	GRGCYC	2 cut(s)	104, 530
Fsp4HI	GCNGC	7 cut(s)	169, 220, 289, 521, 567, 590, 593
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	2 cut(s)	95, 287
GluI	GCNGC	7 cut(s)	169, 220, 289, 521, 567, 590, 593
HaeIII	GGCC	1 cut(s)	329
HgaI	GACGC	1 cut(s)	584
HhaI	GCGC	2 cut(s)	96, 288
Hin6I	GCGC	2 cut(s)	94, 286
HinP1I	GCGC	2 cut(s)	94, 286
HinfI	GANTC	4 cut(s)	13, 181, 301, 386
HphI	GGTGA	4 cut(s)	271, 283, 370, 484
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	4 cut(s)	20, 228, 354, 391
Hpy188III	TCNNGA	5 cut(s)	87, 280, 344, 498, 599
Hpy8I	GTNNAC	1 cut(s)	381
Hpy99I	CGWCG	1 cut(s)	313
HpyAV	CCTTC	3 cut(s)	232, 349, 579
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4V	TGCA	2 cut(s)	442, 461
HpyF10VI	GCNNNNNNNGC	6 cut(s)	153, 216, 488, 509, 551, 589
HpyF3I	CTNAG	2 cut(s)	281, 555
HspAI	GCGC	2 cut(s)	94, 286
KflI	GGGWCCC	1 cut(s)	422
Kpn2I	TCCGGA	1 cut(s)	86
KroI	GCCGGC	1 cut(s)	541
KroNI	GCCGGC	1 cut(s)	543
LmnI	GCTCC	5 cut(s)	89, 99, 500, 533, 563
Lsp1109I	GCAGC	2 cut(s)	576, 579
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	1 cut(s)	573
MbiI	CCGCTC	1 cut(s)	566
MboII	GAAGA	5 cut(s)	26, 187, 262, 286, 326
MflI	RGATCY	3 cut(s)	276, 391, 404
MhlI	GDGCHC	2 cut(s)	104, 530
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	7 cut(s)	32, 88, 171, 276, 286, 354, 358
MroI	TCCGGA	1 cut(s)	86
MroNI	GCCGGC	1 cut(s)	541
MspR9I	CCNGG	3 cut(s)	144, 246, 431
MvnI	CGCG	3 cut(s)	94, 210, 288
MwoI	GCNNNNNNNGC	6 cut(s)	153, 216, 488, 509, 551, 589
NaeI	GCCGGC	1 cut(s)	543
NciI	CCSGG	3 cut(s)	144, 246, 431
NgoMIV	GCCGGC	1 cut(s)	541
NlaIV	GGNNCC	5 cut(s)	101, 243, 406, 423, 424
NmeAIII	GCCGAG	1 cut(s)	549
PaqCI	CACCTGC	1 cut(s)	259
PdiI	GCCGGC	1 cut(s)	543
PfeI	GAWTC	3 cut(s)	13, 301, 386
PkrI	GCNGC	7 cut(s)	170, 221, 290, 522, 568, 591, 594
Ple19I	CGATCG	2 cut(s)	214, 226
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
PpuMI	RGGWCCY	1 cut(s)	422
Psp124BI	GAGCTC	1 cut(s)	530
Psp5II	RGGWCCY	1 cut(s)	422
PspN4I	GGNNCC	5 cut(s)	101, 243, 406, 423, 424
PspPI	GGNCC	1 cut(s)	422
PspPPI	RGGWCCY	1 cut(s)	422
PsuI	RGATCY	3 cut(s)	276, 391, 404
PvuI	CGATCG	2 cut(s)	214, 226
RsaI	GTAC	2 cut(s)	382, 488
RsaNI	GTAC	2 cut(s)	381, 487
SacI	GAGCTC	1 cut(s)	530
SatI	GCNGC	7 cut(s)	169, 220, 289, 521, 567, 590, 593
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	3 cut(s)	144, 246, 431
SduI	GDGCHC	2 cut(s)	104, 530
SfaNI	GCATC	1 cut(s)	469
SinI	GGWCC	1 cut(s)	422
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	7 cut(s)	49, 169, 219, 288, 518, 521, 566
SspMI	CTAG	1 cut(s)	573
SstI	GAGCTC	1 cut(s)	530
StyD4I	CCNGG	3 cut(s)	142, 244, 429
TaaI	ACNGT	1 cut(s)	439
TaqI	TCGA	3 cut(s)	37, 343, 600
TasI	AATT	1 cut(s)	106
TauI	GCSGC	5 cut(s)	171, 222, 291, 523, 569
TfiI	GAWTC	3 cut(s)	13, 301, 386
TseI	GCWGC	2 cut(s)	589, 592
TspGWI	ACGGA	6 cut(s)	326, 398, 425, 520, 525, 576
VpaK11BI	GGWCC	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.