Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Reverse (-)

86185939 .. 86186272

Gene Structure 334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG637600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAAGTCTGACAATCAGAGCCCTAGCCCTAACCTTGACCCTACGCTCCGGCGCGGCGAGGCTTTGAATCCGGCAATTGAAGATGAGAGAGAGGGCGGAGTTGGAAGAGATGATCGGAAGGCGAGGGAGGAGAGCGTGGAGTGTTCGGATTCGGATCGGGTGTTGGGATCCACGGACAGGTTGGGACCCGACCCGGAGACGGTGCAGAAGCATATCAAGGTTGCAGAGTTCAAGGTGATGGATGCGATCTACGCTGGATCGGGGGCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

90

Amino Acids

9.83

Weight (kDa)

4.71

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	54
AciI	CCGC	2 cut(s)	54, 96
AclWI	GGATC	4 cut(s)	162, 162, 175, 265
AfiI	CCNNNNNNNGG	2 cut(s)	177, 199
AgsI	TTSAA	3 cut(s)	67, 80, 232
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	4 cut(s)	162, 162, 175, 265
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	185
BamHI	GGATCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	23
BccI	CCATC	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	24
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	3 cut(s)	169, 186, 187
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 199
Bse8I	GATNNNNATC	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	247
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	2 cut(s)	177, 199
BseRI	GAGGAG	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	54
BsiSI	CCGG	3 cut(s)	49, 71, 194
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	2 cut(s)	177, 199
BsmAI	GTCTC	1 cut(s)	191
BsmBI	CGTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	5 cut(s)	112, 154, 167, 246, 257
BspACI	CCGC	2 cut(s)	54, 96
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	3 cut(s)	169, 186, 187
BspPI	GGATC	4 cut(s)	162, 162, 175, 265
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	5 cut(s)	112, 154, 167, 246, 257
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	100
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	247
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	5 cut(s)	115, 157, 170, 249, 260
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	5 cut(s)	112, 154, 167, 246, 257
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	192
BstUI	CGCG	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	247
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	185
CviJI	RGCY	4 cut(s)	21, 27, 62, 266
CviKI_1	RGCY	4 cut(s)	21, 27, 62, 266
DpnI	GATC	5 cut(s)	114, 156, 169, 248, 259
DpnII	GATC	5 cut(s)	112, 154, 167, 246, 257
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
EciI	GGCGGA	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	23
Esp3I	CGTCTC	1 cut(s)	191
FaiI	YATR	1 cut(s)	213
FaqI	GGGAC	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	55
HapII	CCGG	3 cut(s)	49, 71, 194
HhaI	GCGC	1 cut(s)	54
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	2 cut(s)	67, 149
HpaII	CCGG	3 cut(s)	49, 71, 194
HphI	GGTGA	1 cut(s)	247
Hpy188I	TCNGA	5 cut(s)	10, 18, 117, 148, 154
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	2 cut(s)	205, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HspAI	GCGC	1 cut(s)	52
KflI	GGGWCCC	1 cut(s)	185
Kzo9I	GATC	5 cut(s)	112, 154, 167, 246, 257
LmnI	GCTCC	1 cut(s)	51
LpnPI	CCDG	5 cut(s)	62, 84, 163, 207, 240
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	24
MalI	GATC	5 cut(s)	114, 156, 169, 248, 259
MboI	GATC	5 cut(s)	112, 154, 167, 246, 257
MboII	GAAGA	2 cut(s)	92, 117
MfeI	CAATTG	1 cut(s)	75
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	4 cut(s)	52, 85, 117, 121
MseI	TTAA	1 cut(s)	271
MspI	CCGG	3 cut(s)	49, 71, 194
MspR9I	CCNGG	1 cut(s)	194
MunI	CAATTG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	251
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	5 cut(s)	112, 154, 167, 246, 257
NlaIV	GGNNCC	3 cut(s)	169, 186, 187
PfeI	GAWTC	2 cut(s)	67, 149
PkrI	GCNGC	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	185
PspN4I	GGNNCC	3 cut(s)	169, 186, 187
PspPI	GGNCC	1 cut(s)	185
PspPPI	RGGWCCY	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	271
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	5 cut(s)	112, 154, 167, 246, 257
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	4 cut(s)	36, 182, 222, 237
SfaNI	GCATC	1 cut(s)	232
SinI	GGWCC	1 cut(s)	185
Sse9I	AATT	1 cut(s)	75
SsiI	CCGC	2 cut(s)	54, 96
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	202
TasI	AATT	1 cut(s)	75
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	2 cut(s)	67, 149
Tru1I	TTAA	1 cut(s)	271
Tru9I	TTAA	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.