Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Forward (+)

1152159 .. 1152746

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG019700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGGACGGCGATTCTCCGATCACAGGATTGTCTTAGAGGTCGTTTCCGCCACGAAGCCCTAGCCCTAAACTTGACTTCACGCTCCGGATCGCGCCGTAGCCCCAATTTTTCAAACCCTAACCCTAACTCCGGCTCTAATGGCGCGCAGTCTCGCCGCCGGAAGAGGAGTCCGGTCGGCGTTCAATCCAATCAACGCGATCGGATGGTGACGAAGGTTCCGGGGAAGAACTTGGTGATGGGGCAGGTGAAGATCCTCAGGCGCGGCGAGGCGTTGAATCCGGCGACGGAAGATAAGAGAGTGGTCGGAGTTGGTGGTAGAGATGATCGGAAGGCGAGGGAGGAGAGCGTGGAGTGTTCGGATTCGGATCTGGTGTTGGGATCCACGGACCGGTTGGGACCCGACCCGGAGACGGTGCAGAAGCAGATCAAGGTTGCAGAGTTCAAGGTGATGGATGCGATCTACGCTGGATCGGGAGCTTATTATGCTTCTCCGCCGCCGAGCTCCGTTCCGTTGCCGGCTTTTTTGGCTAAGAACGGTGCGGCGACCAGCGATCTGCGAAGGCTGCTGCGTCTCGATTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

195

Amino Acids

21.18

Weight (kDa)

10.43

Isoelectric Point (pI)

71.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	235
Acc36I	ACCTGC	1 cut(s)	235
AccII	CGCG	4 cut(s)	94, 146, 198, 264
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	6 cut(s)	49, 157, 264, 494, 497, 542
AclWI	GGATC	6 cut(s)	97, 247, 375, 375, 388, 478
AfiI	CCNNNNNNNGG	4 cut(s)	25, 131, 390, 412
AgeI	ACCGGT	1 cut(s)	390
AgsI	TTSAA	4 cut(s)	114, 185, 277, 445
AluBI	AGCT	2 cut(s)	479, 504
AluI	AGCT	2 cut(s)	479, 504
Alw21I	GWGCWC	1 cut(s)	506
Alw26I	GTCTC	3 cut(s)	156, 404, 578
AlwI	GGATC	6 cut(s)	97, 247, 375, 375, 388, 478
Aor13HI	TCCGGA	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	565, 568
AsiGI	ACCGGT	1 cut(s)	390
AspLEI	GCGC	4 cut(s)	96, 146, 148, 264
AspS9I	GGNCC	2 cut(s)	388, 398
AsuC2I	CCSGG	2 cut(s)	222, 407
AsuHPI	GGTGA	4 cut(s)	220, 247, 259, 460
AvaII	GGWCC	2 cut(s)	388, 398
AxyI	CCTNAGG	1 cut(s)	257
BamHI	GGATCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	506
BbvI	GCAGC	2 cut(s)	552, 555
BccI	CCATC	3 cut(s)	199, 232, 445
BceAI	ACGGC	2 cut(s)	24, 81
BcnI	CCSGG	2 cut(s)	222, 407
BcoDI	GTCTC	3 cut(s)	156, 404, 578
BfaI	CTAG	1 cut(s)	62
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	6 cut(s)	157, 265, 497, 543, 566, 569
BlsI	GCNGC	6 cut(s)	158, 266, 498, 544, 567, 570
Bme1390I	CCNGG	2 cut(s)	222, 407
Bme18I	GGWCC	2 cut(s)	388, 398
BmgT120I	GGNCC	2 cut(s)	388, 398
BmiI	GGNNCC	4 cut(s)	219, 382, 399, 400
BmrFI	CCNGG	2 cut(s)	222, 407
BmsI	GCATC	1 cut(s)	445
BpuMI	CCSGG	2 cut(s)	222, 407
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	221, 384
BsaWI	WCCGGW	3 cut(s)	86, 172, 390
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 131, 390, 412
Bse118I	RCCGGY	2 cut(s)	390, 517
Bse21I	CCTNAGG	1 cut(s)	257
Bse8I	GATNNNNATC	1 cut(s)	366
BseAI	TCCGGA	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	221, 384
BseGI	GGATG	2 cut(s)	210, 460
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	4 cut(s)	25, 131, 390, 412
BseMII	CTCAG	1 cut(s)	271
BsePI	GCGCGC	1 cut(s)	144
BseRI	GAGGAG	2 cut(s)	181, 356
BseXI	GCAGC	2 cut(s)	552, 555
BsgI	GTGCAG	1 cut(s)	437
Bsh1236I	CGCG	4 cut(s)	94, 146, 198, 264
Bsh1285I	CGRYCG	2 cut(s)	177, 202
BshTI	ACCGGT	1 cut(s)	390
BsiEI	CGRYCG	2 cut(s)	177, 202
BsiHKAI	GWGCWC	1 cut(s)	506
BsiSI	CCGG	9 cut(s)	87, 132, 160, 173, 221, 281, 391, 407, 518
BslFI	GGGAC	2 cut(s)	19, 411
BslI	CCNNNNNNNGG	4 cut(s)	25, 131, 390, 412
BsmAI	GTCTC	3 cut(s)	156, 404, 578
BsmBI	CGTCTC	2 cut(s)	404, 578
BsmFI	GGGAC	2 cut(s)	19, 411
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp13I	TCCGGA	1 cut(s)	86
BspACI	CCGC	6 cut(s)	49, 157, 264, 494, 497, 542
BspCNI	CTCAG	1 cut(s)	270
BspEI	TCCGGA	1 cut(s)	86
BspFNI	CGCG	4 cut(s)	94, 146, 198, 264
BspLI	GGNNCC	4 cut(s)	219, 382, 399, 400
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	6 cut(s)	97, 247, 375, 375, 388, 478
BsrFI	RCCGGY	2 cut(s)	390, 517
BssAI	RCCGGY	2 cut(s)	390, 517
BssECI	CCNNGG	2 cut(s)	221, 384
BssHII	GCGCGC	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	415, 539
Bst6I	CTCTTC	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	146, 519
BstDEI	CTNAG	3 cut(s)	35, 257, 531
BstDSI	CCRYGG	1 cut(s)	384
BstF5I	GGATG	2 cut(s)	210, 460
BstFNI	CGCG	4 cut(s)	94, 146, 198, 264
BstHHI	GCGC	4 cut(s)	96, 146, 148, 264
BstMAI	GTCTC	3 cut(s)	156, 404, 578
BstMCI	CGRYCG	2 cut(s)	177, 202
BstMWI	GCNNNNNNNGC	5 cut(s)	141, 464, 485, 527, 565
BstSCI	CCNGG	2 cut(s)	220, 405
BstUI	CGCG	4 cut(s)	94, 146, 198, 264
BstV1I	GCAGC	2 cut(s)	552, 555
BstX2I	RGATCY	3 cut(s)	252, 367, 380
BstYI	RGATCY	3 cut(s)	252, 367, 380
Bsu36I	CCTNAGG	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	210, 460
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	146, 519
CfoI	GCGC	4 cut(s)	96, 146, 148, 264
Cfr10I	RCCGGY	2 cut(s)	390, 517
Cfr13I	GGNCC	2 cut(s)	388, 398
CpoI	CGGWCCG	1 cut(s)	388
CseI	GACGC	1 cut(s)	560
CspAI	ACCGGT	1 cut(s)	390
CspI	CGGWCCG	1 cut(s)	388
CviJI	RGCY	9 cut(s)	59, 65, 102, 135, 479, 504, 521, 530, 565
CviKI_1	RGCY	9 cut(s)	59, 65, 102, 135, 479, 504, 521, 530, 565
DdeI	CTNAG	3 cut(s)	35, 257, 531
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
EciI	GGCGGA	2 cut(s)	38, 483
Ecl136II	GAGCTC	1 cut(s)	504
Eco24I	GRGCYC	1 cut(s)	506
Eco47I	GGWCC	2 cut(s)	388, 398
Eco53kI	GAGCTC	1 cut(s)	504
Eco81I	CCTNAGG	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	504
EcoO109I	RGGNCCY	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	506
Esp3I	CGTCTC	2 cut(s)	404, 578
FaiI	YATR	1 cut(s)	486
FaqI	GGGAC	2 cut(s)	19, 411
Fnu4HI	GCNGC	6 cut(s)	157, 265, 497, 543, 566, 569
FokI	GGATG	2 cut(s)	217, 467
FriOI	GRGCYC	1 cut(s)	506
Fsp4HI	GCNGC	6 cut(s)	157, 265, 497, 543, 566, 569
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	4 cut(s)	95, 145, 147, 263
GluI	GCNGC	6 cut(s)	157, 265, 497, 543, 566, 569
HapII	CCGG	9 cut(s)	87, 132, 160, 173, 221, 281, 391, 407, 518
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	4 cut(s)	96, 146, 148, 264
Hin6I	GCGC	4 cut(s)	94, 144, 146, 262
HinP1I	GCGC	4 cut(s)	94, 144, 146, 262
HinfI	GANTC	4 cut(s)	13, 169, 277, 362
HpaII	CCGG	9 cut(s)	87, 132, 160, 173, 221, 281, 391, 407, 518
HphI	GGTGA	4 cut(s)	220, 247, 259, 460
Hpy188I	TCNGA	6 cut(s)	20, 204, 308, 330, 361, 367
Hpy188III	TCNNGA	3 cut(s)	87, 474, 575
Hpy99I	CGWCG	1 cut(s)	289
HpyAV	CCTTC	3 cut(s)	208, 325, 555
HpyCH4III	ACNGT	2 cut(s)	415, 539
HpyCH4V	TGCA	2 cut(s)	418, 437
HpyF10VI	GCNNNNNNNGC	5 cut(s)	141, 464, 485, 527, 565
HpyF3I	CTNAG	3 cut(s)	35, 257, 531
HspAI	GCGC	4 cut(s)	94, 144, 146, 262
KflI	GGGWCCC	1 cut(s)	398
Kpn2I	TCCGGA	1 cut(s)	86
KroI	GCCGGC	1 cut(s)	517
KroNI	GCCGGC	1 cut(s)	519
LmnI	GCTCC	3 cut(s)	89, 476, 509
Lsp1109I	GCAGC	2 cut(s)	552, 555
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	208
MboII	GAAGA	4 cut(s)	175, 238, 262, 302
MflI	RGATCY	3 cut(s)	252, 367, 380
MhlI	GDGCHC	1 cut(s)	506
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	6 cut(s)	32, 159, 262, 266, 330, 334
MroI	TCCGGA	1 cut(s)	86
MroNI	GCCGGC	1 cut(s)	517
MspI	CCGG	9 cut(s)	87, 132, 160, 173, 221, 281, 391, 407, 518
MspR9I	CCNGG	2 cut(s)	222, 407
MvnI	CGCG	4 cut(s)	94, 146, 198, 264
MwoI	GCNNNNNNNGC	5 cut(s)	141, 464, 485, 527, 565
NaeI	GCCGGC	1 cut(s)	519
NciI	CCSGG	2 cut(s)	222, 407
NgoMIV	GCCGGC	1 cut(s)	517
NlaIV	GGNNCC	4 cut(s)	219, 382, 399, 400
NmeAIII	GCCGAG	1 cut(s)	525
NmuCI	GTSAC	1 cut(s)	208
PaqCI	CACCTGC	1 cut(s)	235
PauI	GCGCGC	1 cut(s)	144
PdiI	GCCGGC	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	13, 277, 362
PinAI	ACCGGT	1 cut(s)	390
PkrI	GCNGC	6 cut(s)	158, 266, 498, 544, 567, 570
Ple19I	CGATCG	1 cut(s)	202
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
PpuMI	RGGWCCY	1 cut(s)	398
Psp124BI	GAGCTC	1 cut(s)	506
Psp5II	RGGWCCY	1 cut(s)	398
PspN4I	GGNNCC	4 cut(s)	219, 382, 399, 400
PspPI	GGNCC	2 cut(s)	388, 398
PspPPI	RGGWCCY	1 cut(s)	398
PsuI	RGATCY	3 cut(s)	252, 367, 380
PteI	GCGCGC	1 cut(s)	144
PvuI	CGATCG	1 cut(s)	202
Rsr2I	CGGWCCG	1 cut(s)	388
RsrII	CGGWCCG	1 cut(s)	388
SacI	GAGCTC	1 cut(s)	506
SatI	GCNGC	6 cut(s)	157, 265, 497, 543, 566, 569
Sau96I	GGNCC	2 cut(s)	388, 398
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	2 cut(s)	222, 407
SduI	GDGCHC	1 cut(s)	506
SetI	ASST	7 cut(s)	43, 219, 249, 435, 450, 481, 506
SfaNI	GCATC	1 cut(s)	445
SinI	GGWCC	2 cut(s)	388, 398
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	6 cut(s)	49, 157, 264, 494, 497, 542
SspMI	CTAG	1 cut(s)	62
SstI	GAGCTC	1 cut(s)	506
StyD4I	CCNGG	2 cut(s)	220, 405
TaaI	ACNGT	2 cut(s)	415, 539
TaqI	TCGA	1 cut(s)	576
TasI	AATT	1 cut(s)	106
TauI	GCSGC	4 cut(s)	159, 267, 499, 545
TfiI	GAWTC	3 cut(s)	13, 277, 362
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	565, 568
Tsp45I	GTSAC	1 cut(s)	208
TspGWI	ACGGA	4 cut(s)	302, 401, 496, 501
VpaK11BI	GGWCC	2 cut(s)	388, 398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.