Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004602.1

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Forward (+)

215100 .. 218128

Gene Structure 3029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004602.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgaggggggggaggggagctgtcggggactcgagtctcctgtggggagtggttttggtgtatgtggcccaaaaagagctgggtatgtcaccgggacttaggggataccgccgggacgaatatgtgaaggcagtgggtgtccaagaattttgcaatgggttggctgaggggtcggcgttgttgaagcacggtgatttgatatatgttcccgaggccaatggagatgaattacccagagctggagtcgaggtaagtctccgaggtcggtgttttgtctcggccgggctacgggtctggggttgttcaagttgctacatgattgcatgcatgcatgatctcaatggcttggctttgtatgattactcgtgcagggtcttgaatgtgaggggtggtacgtgtacccggaagatcatgtacccggaagatcatgtacccgtacatgacccttgctcaaggttggaggttcataccctaactcctaggagccctccttctagcgccaatgtttctgatgaagaatacttgagctctagccctaaccttgaccctacgctccggcgcggcgaggctttgaatccggcaacggaagctgagagagagggcggagttggaagagatgatcggaaggcaagggaggagagcgtggagtgttcggattcggatctggtgttgggatccacggacaggttgggacccgacccggagacggtgcagaagcagatcaaggttgcagagttcaaggtgatggatgcgatctacgctggatcgggggcttattatgcttctccgccgccgagctccattccgctgccggcttttttggctaagtacggtgcagtgactagcaatctgcgccggctgctgcgtctcgatttggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

293

Amino Acids

31.77

Weight (kDa)

5.65

Isoelectric Point (pI)

54.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	561
AciI	CCGC	6 cut(s)	109, 561, 603, 788, 791, 806
AclWI	GGATC	4 cut(s)	669, 669, 682, 772
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	146
AfaI	GTAC	6 cut(s)	394, 400, 416, 432, 438, 830
AfiI	CCNNNNNNNGG	4 cut(s)	239, 288, 684, 706
AflIII	ACRYGT	1 cut(s)	395
AgsI	TTSAA	5 cut(s)	184, 306, 379, 574, 739
AluBI	AGCT	6 cut(s)	20, 79, 239, 528, 590, 798
AluI	AGCT	6 cut(s)	20, 79, 239, 528, 590, 798
Alw21I	GWGCWC	2 cut(s)	530, 800
Alw26I	GTCTC	5 cut(s)	41, 260, 280, 698, 872
AlwI	GGATC	4 cut(s)	669, 669, 682, 772
Ama87I	CYCGRG	2 cut(s)	31, 209
AoxI	GGCC	3 cut(s)	66, 213, 279
ApeKI	GCWGC	3 cut(s)	808, 859, 862
ApoI	RAATTY	1 cut(s)	146
AspA2I	CCTAGG	1 cut(s)	479
AspLEI	GCGC	3 cut(s)	500, 561, 855
AspS9I	GGNCC	2 cut(s)	67, 692
AsuC2I	CCSGG	6 cut(s)	93, 113, 283, 403, 419, 701
AsuHPI	GGTGA	3 cut(s)	81, 203, 754
AvaI	CYCGRG	2 cut(s)	31, 209
AvaII	GGWCC	1 cut(s)	692
AvrII	CCTAGG	1 cut(s)	479
BamHI	GGATCC	1 cut(s)	674
BanII	GRGCYC	3 cut(s)	488, 530, 800
BarI	GAAGNNNNNNTAC	4 cut(s)	398, 414, 430, 446
BauI	CACGAG	1 cut(s)	364
Bbv12I	GWGCWC	2 cut(s)	530, 800
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	3 cut(s)	795, 846, 849
BccI	CCATC	1 cut(s)	739
BciVI	GTATCC	1 cut(s)	98
BcnI	CCSGG	6 cut(s)	93, 113, 283, 403, 419, 701
BcoDI	GTCTC	5 cut(s)	41, 260, 280, 698, 872
BfaI	CTAG	4 cut(s)	480, 495, 531, 843
BfoI	RGCGCY	1 cut(s)	501
BfuI	GTATCC	1 cut(s)	98
BisI	GCNGC	5 cut(s)	562, 791, 809, 860, 863
BlnI	CCTAGG	1 cut(s)	479
BlsI	GCNGC	5 cut(s)	563, 792, 810, 861, 864
Bme1390I	CCNGG	6 cut(s)	93, 113, 283, 403, 419, 701
Bme18I	GGWCC	1 cut(s)	692
BmeT110I	CYCGRG	2 cut(s)	31, 209
BmgT120I	GGNCC	2 cut(s)	67, 692
BmiI	GGNNCC	4 cut(s)	485, 676, 693, 694
BmrFI	CCNGG	6 cut(s)	93, 113, 283, 403, 419, 701
BmsI	GCATC	1 cut(s)	739
BoxI	GACNNNNGTC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	2 cut(s)	436, 544
BpuMI	CCSGG	6 cut(s)	93, 113, 283, 403, 419, 701
BsaAI	YACGTR	1 cut(s)	396
BsaBI	GATNNNNATC	1 cut(s)	660
BsaJI	CCNNGG	4 cut(s)	210, 259, 479, 678
BsaXI	ACNNNNNCTCC	4 cut(s)	234, 264, 460, 490
Bsc4I	CCNNNNNNNGG	4 cut(s)	239, 288, 684, 706
Bse118I	RCCGGY	2 cut(s)	811, 855
Bse3DI	GCAATG	1 cut(s)	160
Bse8I	GATNNNNATC	1 cut(s)	660
BseDI	CCNNGG	4 cut(s)	210, 259, 479, 678
BseGI	GGATG	1 cut(s)	754
BseJI	GATNNNNATC	1 cut(s)	660
BseLI	CCNNNNNNNGG	4 cut(s)	239, 288, 684, 706
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	156, 582
BseRI	GAGGAG	1 cut(s)	650
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	3 cut(s)	795, 846, 849
BseYI	CCCAGC	1 cut(s)	79
BsgI	GTGCAG	3 cut(s)	388, 731, 855
Bsh1236I	CGCG	1 cut(s)	561
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	68, 215, 281
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	2 cut(s)	530, 800
BsiHKCI	CYCGRG	2 cut(s)	31, 209
BslFI	GGGAC	4 cut(s)	41, 108, 128, 705
BslI	CCNNNNNNNGG	4 cut(s)	239, 288, 684, 706
BsmAI	GTCTC	5 cut(s)	41, 260, 280, 698, 872
BsmBI	CGTCTC	2 cut(s)	698, 872
BsmFI	GGGAC	4 cut(s)	41, 108, 128, 705
BsnI	GGCC	3 cut(s)	68, 215, 281
BsoBI	CYCGRG	2 cut(s)	31, 209
Bsp1286I	GDGCHC	3 cut(s)	488, 530, 800
Bsp143I	GATC	9 cut(s)	334, 408, 424, 619, 661, 674, 720, 753, 764
BspACI	CCGC	6 cut(s)	109, 561, 603, 788, 791, 806
BspANI	GGCC	3 cut(s)	68, 215, 281
BspCNI	CTCAG	2 cut(s)	157, 583
BspFNI	CGCG	1 cut(s)	561
BspLI	GGNNCC	4 cut(s)	485, 676, 693, 694
BspPI	GGATC	4 cut(s)	669, 669, 682, 772
BsrDI	GCAATG	1 cut(s)	160
BsrFI	RCCGGY	2 cut(s)	811, 855
BssAI	RCCGGY	2 cut(s)	811, 855
BssECI	CCNNGG	4 cut(s)	210, 259, 479, 678
BssMI	GATC	9 cut(s)	334, 408, 424, 619, 661, 674, 720, 753, 764
BssSI	CACGAG	1 cut(s)	364
BssT1I	CCWWGG	1 cut(s)	479
Bst2BI	CACGAG	1 cut(s)	364
Bst4CI	ACNGT	3 cut(s)	191, 709, 833
Bst6I	CTCTTC	1 cut(s)	607
BstBAI	YACGTR	1 cut(s)	396
BstC8I	GCNNGC	4 cut(s)	325, 329, 813, 857
BstDEI	CTNAG	4 cut(s)	98, 165, 591, 825
BstDSI	CCRYGG	1 cut(s)	678
BstF5I	GGATG	1 cut(s)	754
BstFNI	CGCG	1 cut(s)	561
BstH2I	RGCGCY	1 cut(s)	501
BstHHI	GCGC	3 cut(s)	500, 561, 855
BstKTI	GATC	9 cut(s)	337, 411, 427, 622, 664, 677, 723, 756, 767
BstMAI	GTCTC	5 cut(s)	41, 260, 280, 698, 872
BstMBI	GATC	9 cut(s)	334, 408, 424, 619, 661, 674, 720, 753, 764
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	6 cut(s)	587, 758, 779, 821, 852, 859
BstNSI	RCATGY	2 cut(s)	327, 331
BstPAI	GACNNNNGTC	1 cut(s)	33
BstSCI	CCNGG	6 cut(s)	91, 111, 281, 401, 417, 699
BstUI	CGCG	1 cut(s)	561
BstV1I	GCAGC	3 cut(s)	795, 846, 849
BstX2I	RGATCY	2 cut(s)	661, 674
BstYI	RGATCY	2 cut(s)	661, 674
BstZI	CGGCCG	1 cut(s)	279
BsuI	GTATCC	1 cut(s)	98
BsuRI	GGCC	3 cut(s)	68, 215, 281
BtgI	CCRYGG	1 cut(s)	678
BtsCI	GGATG	1 cut(s)	754
BtsI	GCAGTG	2 cut(s)	138, 843
BtsIMutI	CAGTG	2 cut(s)	138, 843
Cac8I	GCNNGC	4 cut(s)	325, 329, 813, 857
CfoI	GCGC	3 cut(s)	500, 561, 855
Cfr10I	RCCGGY	2 cut(s)	811, 855
Cfr13I	GGNCC	2 cut(s)	67, 692
CseI	GACGC	1 cut(s)	854
Csp6I	GTAC	6 cut(s)	393, 399, 415, 431, 437, 829
CviAII	CATG	7 cut(s)	316, 324, 328, 332, 412, 428, 440
CviQI	GTAC	6 cut(s)	393, 399, 415, 431, 437, 829
DdeI	CTNAG	4 cut(s)	98, 165, 591, 825
DpnI	GATC	9 cut(s)	336, 410, 426, 621, 663, 676, 722, 755, 766
DpnII	GATC	9 cut(s)	334, 408, 424, 619, 661, 674, 720, 753, 764
EaeI	YGGCCR	1 cut(s)	279
EagI	CGGCCG	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	607
EarI	CTCTTC	1 cut(s)	607
EciI	GGCGGA	2 cut(s)	618, 777
Ecl136II	GAGCTC	2 cut(s)	528, 798
EclXI	CGGCCG	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	479
Eco24I	GRGCYC	3 cut(s)	488, 530, 800
Eco47I	GGWCC	1 cut(s)	692
Eco52I	CGGCCG	1 cut(s)	279
Eco53kI	GAGCTC	2 cut(s)	528, 798
Eco88I	CYCGRG	2 cut(s)	31, 209
EcoICRI	GAGCTC	2 cut(s)	528, 798
EcoO109I	RGGNCCY	1 cut(s)	692
EcoT14I	CCWWGG	1 cut(s)	479
EcoT22I	ATGCAT	2 cut(s)	329, 333
EcoT38I	GRGCYC	3 cut(s)	488, 530, 800
ErhI	CCWWGG	1 cut(s)	479
Esp3I	CGTCTC	2 cut(s)	698, 872
FaeI	CATG	7 cut(s)	319, 327, 331, 335, 415, 431, 443
FaqI	GGGAC	4 cut(s)	41, 108, 128, 705
FatI	CATG	7 cut(s)	315, 323, 327, 331, 411, 427, 439
Fnu4HI	GCNGC	5 cut(s)	562, 791, 809, 860, 863
FokI	GGATG	1 cut(s)	761
FriOI	GRGCYC	3 cut(s)	488, 530, 800
Fsp4HI	GCNGC	5 cut(s)	562, 791, 809, 860, 863
FspBI	CTAG	4 cut(s)	480, 495, 531, 843
GlaI	GCGC	3 cut(s)	499, 560, 854
GluI	GCNGC	5 cut(s)	562, 791, 809, 860, 863
GsaI	CCCAGC	1 cut(s)	83
GsuI	CTGGAG	1 cut(s)	261
HaeII	RGCGCY	1 cut(s)	501
HaeIII	GGCC	3 cut(s)	68, 215, 281
HgaI	GACGC	1 cut(s)	854
HhaI	GCGC	3 cut(s)	500, 561, 855
Hin1II	CATG	7 cut(s)	319, 327, 331, 335, 415, 431, 443
Hin6I	GCGC	3 cut(s)	498, 559, 853
HinP1I	GCGC	3 cut(s)	498, 559, 853
HinfI	GANTC	5 cut(s)	29, 34, 243, 574, 656
HphI	GGTGA	3 cut(s)	81, 203, 754
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	5 cut(s)	260, 511, 624, 655, 661
Hpy188III	TCNNGA	3 cut(s)	209, 376, 869
Hpy8I	GTNNAC	1 cut(s)	399
HpyAV	CCTTC	3 cut(s)	121, 501, 619
HpyCH4III	ACNGT	3 cut(s)	191, 709, 833
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	8 cut(s)	153, 323, 327, 331, 369, 712, 731, 836
HpyF10VI	GCNNNNNNNGC	6 cut(s)	587, 758, 779, 821, 852, 859
HpyF3I	CTNAG	4 cut(s)	98, 165, 591, 825
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	7 cut(s)	319, 327, 331, 335, 415, 431, 443
HspAI	GCGC	3 cut(s)	498, 559, 853
KflI	GGGWCCC	1 cut(s)	692
KroI	GCCGGC	2 cut(s)	811, 855
KroNI	GCCGGC	2 cut(s)	813, 857
Kzo9I	GATC	9 cut(s)	334, 408, 424, 619, 661, 674, 720, 753, 764
LmnI	GCTCC	4 cut(s)	17, 483, 558, 803
Lsp1109I	GCAGC	3 cut(s)	795, 846, 849
LweI	GCATC	1 cut(s)	739
MaeI	CTAG	4 cut(s)	480, 495, 531, 843
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	2 cut(s)	87, 838
MalI	GATC	9 cut(s)	336, 410, 426, 621, 663, 676, 722, 755, 766
MboI	GATC	9 cut(s)	334, 408, 424, 619, 661, 674, 720, 753, 764
MboII	GAAGA	4 cut(s)	418, 434, 527, 624
MflI	RGATCY	2 cut(s)	661, 674
MhlI	GDGCHC	3 cut(s)	488, 530, 800
MluCI	AATT	2 cut(s)	146, 227
MlyI	GAGTC	3 cut(s)	23, 43, 252
MmeI	TCCRAC	2 cut(s)	438, 589
Mph1103I	ATGCAT	2 cut(s)	329, 333
MroNI	GCCGGC	2 cut(s)	811, 855
MspA1I	CMGCKG	1 cut(s)	808
MspR9I	CCNGG	6 cut(s)	93, 113, 283, 403, 419, 701
MvnI	CGCG	1 cut(s)	561
MwoI	GCNNNNNNNGC	6 cut(s)	587, 758, 779, 821, 852, 859
NaeI	GCCGGC	2 cut(s)	813, 857
NciI	CCSGG	6 cut(s)	93, 113, 283, 403, 419, 701
NdeII	GATC	9 cut(s)	334, 408, 424, 619, 661, 674, 720, 753, 764
NgoMIV	GCCGGC	2 cut(s)	811, 855
NlaIII	CATG	7 cut(s)	319, 327, 331, 335, 415, 431, 443
NlaIV	GGNNCC	4 cut(s)	485, 676, 693, 694
NmeAIII	GCCGAG	2 cut(s)	257, 819
NmuCI	GTSAC	2 cut(s)	87, 838
NsiI	ATGCAT	2 cut(s)	329, 333
NspI	RCATGY	2 cut(s)	327, 331
PaeI	GCATGC	2 cut(s)	327, 331
PaeR7I	CTCGAG	1 cut(s)	31
PdiI	GCCGGC	2 cut(s)	813, 857
PfeI	GAWTC	2 cut(s)	574, 656
PkrI	GCNGC	5 cut(s)	563, 792, 810, 861, 864
PleI	GAGTC	3 cut(s)	23, 42, 251
PpsI	GAGTC	3 cut(s)	23, 42, 251
Ppu21I	YACGTR	1 cut(s)	396
PpuMI	RGGWCCY	1 cut(s)	692
PshAI	GACNNNNGTC	1 cut(s)	33
Psp124BI	GAGCTC	2 cut(s)	530, 800
Psp5II	RGGWCCY	1 cut(s)	692
PspFI	CCCAGC	1 cut(s)	79
PspN4I	GGNNCC	4 cut(s)	485, 676, 693, 694
PspPI	GGNCC	2 cut(s)	67, 692
PspPPI	RGGWCCY	1 cut(s)	692
PspXI	VCTCGAGB	1 cut(s)	31
PsuI	RGATCY	2 cut(s)	661, 674
RsaI	GTAC	6 cut(s)	394, 400, 416, 432, 438, 830
RsaNI	GTAC	6 cut(s)	393, 399, 415, 431, 437, 829
SacI	GAGCTC	2 cut(s)	530, 800
SatI	GCNGC	5 cut(s)	562, 791, 809, 860, 863
Sau3AI	GATC	9 cut(s)	334, 408, 424, 619, 661, 674, 720, 753, 764
Sau96I	GGNCC	2 cut(s)	67, 692
SchI	GAGTC	3 cut(s)	23, 43, 252
ScrFI	CCNGG	6 cut(s)	93, 113, 283, 403, 419, 701
SduI	GDGCHC	3 cut(s)	488, 530, 800
SfaNI	GCATC	1 cut(s)	739
Sfr274I	CTCGAG	1 cut(s)	31
SinI	GGWCC	1 cut(s)	692
SlaI	CTCGAG	1 cut(s)	31
SmlI	CTYRAG	3 cut(s)	31, 451, 523
SmoI	CTYRAG	3 cut(s)	31, 451, 523
SphI	GCATGC	2 cut(s)	327, 331
Sse9I	AATT	2 cut(s)	146, 227
SsiI	CCGC	6 cut(s)	109, 561, 603, 788, 791, 806
SspMI	CTAG	4 cut(s)	480, 495, 531, 843
SstI	GAGCTC	2 cut(s)	530, 800
StyD4I	CCNGG	6 cut(s)	91, 111, 281, 401, 417, 699
StyI	CCWWGG	1 cut(s)	479
TaaI	ACNGT	3 cut(s)	191, 709, 833
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	3 cut(s)	32, 246, 870
TasI	AATT	2 cut(s)	146, 227
TauI	GCSGC	2 cut(s)	564, 793
TfiI	GAWTC	2 cut(s)	574, 656
TscAI	CASTG	2 cut(s)	138, 843
TseFI	GTSAC	2 cut(s)	87, 838
TseI	GCWGC	3 cut(s)	808, 859, 862
Tsp45I	GTSAC	2 cut(s)	87, 838
TspDTI	ATGAA	3 cut(s)	240, 455, 528
TspGWI	ACGGA	2 cut(s)	599, 695
TspRI	CASTG	2 cut(s)	138, 843
VpaK11BI	GGWCC	1 cut(s)	692
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	2 cut(s)	327, 331
XcmI	CCANNNNNNNNNTGG	1 cut(s)	685
XhoI	CTCGAG	1 cut(s)	31
XmaJI	CCTAGG	1 cut(s)	479
XspI	CTAG	4 cut(s)	480, 495, 531, 843
Zsp2I	ATGCAT	2 cut(s)	329, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.