Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Reverse (-)

91102276 .. 91102875

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00154500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGGACGGCGATTCTCCGATCACAGGATTGTCTTCGAGGTCGTTTCCGCCACGAAGCCCTAGCCCTAGCCTTGACCTCATGCTCCGGATCGCGCCGGAGCCCCAATTTTTCTAACCCTAACCCTAACTCCGGCTCTAATGGCTCGCAGTCTCGCCGCCGGAAGAGGAGTCCGGTCGGCGTTCAATCCAATCAACGCGATCGGTACGGCGATCGGATGGTGGCGAAGGTTCCGGGGAAGAACTTGGTGATGGGGCAGGTGAAGATCCTCAGGCGCGGCGAGGCGTTGAATCCGGCGACGGAAGATAAGAGAGTGGTCGGAGTTGGTGGTAGAGATGATCGGAAGGCGAGGGAGGAGAGCGTGGAGTGTTCGGATTCGGATCTGGTGTTGGGATCCACGGACCGGTTGGGACCCGACCCGGAGACGGTGCAGAAGCAGATCAAGGTTGCAGAGTTCAAGGTGATGGATGCGATCTACGCTGGATCGGGAGCTTATTATGCTTCTCCGCCGCCGAGCTCCGTTCCGTTGCCGGCTTTTTTGGCTAAGAACGGAGCGGCGACCAGCGATCTGCGAAGGCTGCTGCGTCTCGATTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

199

Amino Acids

21.57

Weight (kDa)

10.11

Isoelectric Point (pI)

69.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	247
Acc36I	ACCTGC	1 cut(s)	247
AccBSI	CCGCTC	1 cut(s)	554
AccII	CGCG	3 cut(s)	94, 198, 276
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	6 cut(s)	49, 157, 276, 506, 509, 554
AclWI	GGATC	6 cut(s)	97, 259, 387, 387, 400, 490
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	4 cut(s)	25, 131, 402, 424
AgeI	ACCGGT	1 cut(s)	402
AgsI	TTSAA	3 cut(s)	185, 289, 457
AluBI	AGCT	2 cut(s)	491, 516
AluI	AGCT	2 cut(s)	491, 516
Alw21I	GWGCWC	1 cut(s)	518
Alw26I	GTCTC	3 cut(s)	156, 416, 590
AlwI	GGATC	6 cut(s)	97, 259, 387, 387, 400, 490
Aor13HI	TCCGGA	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	577, 580
AsiGI	ACCGGT	1 cut(s)	402
AspLEI	GCGC	2 cut(s)	96, 276
AspS9I	GGNCC	2 cut(s)	400, 410
AsuC2I	CCSGG	2 cut(s)	234, 419
AsuHPI	GGTGA	3 cut(s)	259, 271, 472
AvaII	GGWCC	2 cut(s)	400, 410
AxyI	CCTNAGG	1 cut(s)	269
BamHI	GGATCC	1 cut(s)	392
BanII	GRGCYC	2 cut(s)	104, 518
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	518
BbvI	GCAGC	2 cut(s)	564, 567
BccI	CCATC	3 cut(s)	211, 244, 457
BceAI	ACGGC	2 cut(s)	24, 223
BcnI	CCSGG	2 cut(s)	234, 419
BcoDI	GTCTC	3 cut(s)	156, 416, 590
BfaI	CTAG	2 cut(s)	62, 68
BfuAI	ACCTGC	1 cut(s)	247
BisI	GCNGC	6 cut(s)	157, 277, 509, 555, 578, 581
BlsI	GCNGC	6 cut(s)	158, 278, 510, 556, 579, 582
Bme1390I	CCNGG	2 cut(s)	234, 419
Bme18I	GGWCC	2 cut(s)	400, 410
BmgT120I	GGNCC	2 cut(s)	400, 410
BmiI	GGNNCC	5 cut(s)	101, 231, 394, 411, 412
BmrFI	CCNGG	2 cut(s)	234, 419
BmsI	GCATC	1 cut(s)	457
BpiI	GAAGAC	1 cut(s)	26
BpuMI	CCSGG	2 cut(s)	234, 419
BsaBI	GATNNNNATC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	233, 396
BsaWI	WCCGGW	3 cut(s)	86, 172, 402
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 131, 402, 424
Bse118I	RCCGGY	2 cut(s)	402, 529
Bse21I	CCTNAGG	1 cut(s)	269
Bse8I	GATNNNNATC	1 cut(s)	378
BseAI	TCCGGA	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	233, 396
BseGI	GGATG	2 cut(s)	222, 472
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	4 cut(s)	25, 131, 402, 424
BseMII	CTCAG	1 cut(s)	283
BseRI	GAGGAG	2 cut(s)	181, 368
BseXI	GCAGC	2 cut(s)	564, 567
BsgI	GTGCAG	1 cut(s)	449
Bsh1236I	CGCG	3 cut(s)	94, 198, 276
Bsh1285I	CGRYCG	3 cut(s)	177, 202, 214
BshTI	ACCGGT	1 cut(s)	402
BsiEI	CGRYCG	3 cut(s)	177, 202, 214
BsiHKAI	GWGCWC	1 cut(s)	518
BslFI	GGGAC	2 cut(s)	19, 423
BslI	CCNNNNNNNGG	4 cut(s)	25, 131, 402, 424
BsmAI	GTCTC	3 cut(s)	156, 416, 590
BsmBI	CGTCTC	2 cut(s)	416, 590
BsmFI	GGGAC	2 cut(s)	19, 423
Bsp1286I	GDGCHC	2 cut(s)	104, 518
Bsp13I	TCCGGA	1 cut(s)	86
BspACI	CCGC	6 cut(s)	49, 157, 276, 506, 509, 554
BspCNI	CTCAG	1 cut(s)	282
BspEI	TCCGGA	1 cut(s)	86
BspFNI	CGCG	3 cut(s)	94, 198, 276
BspLI	GGNNCC	5 cut(s)	101, 231, 394, 411, 412
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	6 cut(s)	97, 259, 387, 387, 400, 490
BsrBI	CCGCTC	1 cut(s)	554
BsrFI	RCCGGY	2 cut(s)	402, 529
BssAI	RCCGGY	2 cut(s)	402, 529
BssECI	CCNNGG	2 cut(s)	233, 396
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	146, 531
BstDEI	CTNAG	2 cut(s)	269, 543
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	222, 472
BstFNI	CGCG	3 cut(s)	94, 198, 276
BstHHI	GCGC	2 cut(s)	96, 276
BstMAI	GTCTC	3 cut(s)	156, 416, 590
BstMCI	CGRYCG	3 cut(s)	177, 202, 214
BstMWI	GCNNNNNNNGC	5 cut(s)	141, 476, 497, 539, 577
BstSCI	CCNGG	2 cut(s)	232, 417
BstUI	CGCG	3 cut(s)	94, 198, 276
BstV1I	GCAGC	2 cut(s)	564, 567
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	3 cut(s)	264, 379, 392
BstYI	RGATCY	3 cut(s)	264, 379, 392
Bsu36I	CCTNAGG	1 cut(s)	269
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	222, 472
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	146, 531
CfoI	GCGC	2 cut(s)	96, 276
Cfr10I	RCCGGY	2 cut(s)	402, 529
Cfr13I	GGNCC	2 cut(s)	400, 410
CpoI	CGGWCCG	1 cut(s)	400
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	1 cut(s)	205
CspAI	ACCGGT	1 cut(s)	402
CspI	CGGWCCG	1 cut(s)	400
CviAII	CATG	1 cut(s)	81
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	269, 543
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
EciI	GGCGGA	2 cut(s)	38, 495
Ecl136II	GAGCTC	1 cut(s)	516
Eco24I	GRGCYC	2 cut(s)	104, 518
Eco47I	GGWCC	2 cut(s)	400, 410
Eco53kI	GAGCTC	1 cut(s)	516
Eco81I	CCTNAGG	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	516
EcoO109I	RGGNCCY	1 cut(s)	410
EcoT38I	GRGCYC	2 cut(s)	104, 518
Esp3I	CGTCTC	2 cut(s)	416, 590
FaeI	CATG	1 cut(s)	84
FaiI	YATR	2 cut(s)	82, 498
FaqI	GGGAC	2 cut(s)	19, 423
FatI	CATG	1 cut(s)	80
Fnu4HI	GCNGC	6 cut(s)	157, 277, 509, 555, 578, 581
FokI	GGATG	2 cut(s)	229, 479
FriOI	GRGCYC	2 cut(s)	104, 518
Fsp4HI	GCNGC	6 cut(s)	157, 277, 509, 555, 578, 581
FspBI	CTAG	2 cut(s)	62, 68
GlaI	GCGC	2 cut(s)	95, 275
GluI	GCNGC	6 cut(s)	157, 277, 509, 555, 578, 581
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	2 cut(s)	96, 276
Hin1II	CATG	1 cut(s)	84
Hin6I	GCGC	2 cut(s)	94, 274
HinP1I	GCGC	2 cut(s)	94, 274
HinfI	GANTC	4 cut(s)	13, 169, 289, 374
HphI	GGTGA	3 cut(s)	259, 271, 472
Hpy188I	TCNGA	6 cut(s)	20, 216, 320, 342, 373, 379
Hpy188III	TCNNGA	3 cut(s)	87, 486, 587
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	3 cut(s)	220, 337, 567
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	2 cut(s)	430, 449
HpyF10VI	GCNNNNNNNGC	5 cut(s)	141, 476, 497, 539, 577
HpyF3I	CTNAG	2 cut(s)	269, 543
Hsp92II	CATG	1 cut(s)	84
HspAI	GCGC	2 cut(s)	94, 274
KflI	GGGWCCC	1 cut(s)	410
Kpn2I	TCCGGA	1 cut(s)	86
KroI	GCCGGC	1 cut(s)	529
KroNI	GCCGGC	1 cut(s)	531
LmnI	GCTCC	5 cut(s)	89, 99, 488, 521, 551
Lsp1109I	GCAGC	2 cut(s)	564, 567
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	2 cut(s)	62, 68
MbiI	CCGCTC	1 cut(s)	554
MboII	GAAGA	5 cut(s)	26, 175, 250, 274, 314
MflI	RGATCY	3 cut(s)	264, 379, 392
MhlI	GDGCHC	2 cut(s)	104, 518
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	7 cut(s)	32, 88, 159, 274, 278, 342, 346
MroI	TCCGGA	1 cut(s)	86
MroNI	GCCGGC	1 cut(s)	529
MspR9I	CCNGG	2 cut(s)	234, 419
MvnI	CGCG	3 cut(s)	94, 198, 276
MwoI	GCNNNNNNNGC	5 cut(s)	141, 476, 497, 539, 577
NaeI	GCCGGC	1 cut(s)	531
NciI	CCSGG	2 cut(s)	234, 419
NgoMIV	GCCGGC	1 cut(s)	529
NlaIII	CATG	1 cut(s)	84
NlaIV	GGNNCC	5 cut(s)	101, 231, 394, 411, 412
NmeAIII	GCCGAG	1 cut(s)	537
PaqCI	CACCTGC	1 cut(s)	247
PdiI	GCCGGC	1 cut(s)	531
PfeI	GAWTC	3 cut(s)	13, 289, 374
PinAI	ACCGGT	1 cut(s)	402
PkrI	GCNGC	6 cut(s)	158, 278, 510, 556, 579, 582
Ple19I	CGATCG	2 cut(s)	202, 214
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
PpuMI	RGGWCCY	1 cut(s)	410
Psp124BI	GAGCTC	1 cut(s)	518
Psp5II	RGGWCCY	1 cut(s)	410
PspN4I	GGNNCC	5 cut(s)	101, 231, 394, 411, 412
PspPI	GGNCC	2 cut(s)	400, 410
PspPPI	RGGWCCY	1 cut(s)	410
PsuI	RGATCY	3 cut(s)	264, 379, 392
PvuI	CGATCG	2 cut(s)	202, 214
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
Rsr2I	CGGWCCG	1 cut(s)	400
RsrII	CGGWCCG	1 cut(s)	400
SacI	GAGCTC	1 cut(s)	518
SatI	GCNGC	6 cut(s)	157, 277, 509, 555, 578, 581
Sau96I	GGNCC	2 cut(s)	400, 410
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	2 cut(s)	234, 419
SduI	GDGCHC	2 cut(s)	104, 518
SetI	ASST	8 cut(s)	43, 80, 231, 261, 447, 462, 493, 518
SfaNI	GCATC	1 cut(s)	457
SinI	GGWCC	2 cut(s)	400, 410
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	6 cut(s)	49, 157, 276, 506, 509, 554
SspMI	CTAG	2 cut(s)	62, 68
SstI	GAGCTC	1 cut(s)	518
StyD4I	CCNGG	2 cut(s)	232, 417
TaaI	ACNGT	1 cut(s)	427
TaqI	TCGA	2 cut(s)	37, 588
TasI	AATT	1 cut(s)	106
TauI	GCSGC	4 cut(s)	159, 279, 511, 557
TfiI	GAWTC	3 cut(s)	13, 289, 374
TseI	GCWGC	2 cut(s)	577, 580
TspGWI	ACGGA	5 cut(s)	314, 413, 508, 513, 564
VpaK11BI	GGWCC	2 cut(s)	400, 410
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XspI	CTAG	2 cut(s)	62, 68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.