Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003311

Physical Location & Seq

Genomic Coordinates Forward (+)

73814473 .. 73814887

Gene Structure 415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021287

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAACAGACAAAAGCACACAACTTCCGATTGTGCAGGAGCCCTAGTCCTAACCTTGACCCAACGCTCCGGCGCGGCGAGGCTTTAAATCGGGCAACGGAAGATAAGAGAGAGGGCGGAGTTGGAAGAGATGATCGGAAGGCGAGGGAGGAGAGCGTGGAGTGTTCAGATTCGGATCTGGTGTTGGGATCCACGGACAGGTTGGGACCCGACCCGGAGACAGTGCAGAAGCAGATCAAGGTTGCAGAGTTAAAGGCTTATTATGCTTCTCCGCCGCCGAGCTCCATTCCGCTGCCGGCTTTTTGGCTAAGTACGGTGCAGCGACCAGCAATCTGCACCGGCTGCAGCGTCTCGATTGGGTGTGAACACGTGGCCCTCCGACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

129

Amino Acids

14.09

Weight (kDa)

7.63

Isoelectric Point (pI)

67.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02040
fragaria_vesca	FvH4_1g01550
malus_domestica	MD02G1012300.v1.1 MD15G1158100.v1.1
prunus_persica	Prupe.7G253300_v2.0.a1
pyrus_communis	pycom02g01150 pycom15g14190
rosa_chinensis	RchiOBHm_Chr2g0086511
rosa_laevigata	RLG00000007078 RLG00000008176 RLG00000015761 RLG00000017803 RLG00000021287 RLG00000025075 RLG00000032774
rosa_multiflora	Rmu_sc0002748.1_g000011 Rmu_sc0003219.1_g000015 Rmu_sc0004602.1_g000055 Rmu_sc0010832.1_g000005 Rmu_sc0012559.1_g000002 Rmu_ssc0000367.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154500
rosa_rugosa	Rorug01G0467600
rosa_samantha	Rh2AG018500 Rh2AG637600 Rh2BG017900 Rh2CG018800 Rh2DG019700 Rh4DG328700 Rh5BG302400 Rh5DG311200 Rh5DG441500 Rh5DG451900 Rh6DG202200 Rh7CG426000
rosa_wichuraiana	Rw2G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	75
AciI	CCGC	5 cut(s)	75, 117, 272, 275, 290
AclWI	GGATC	3 cut(s)	183, 183, 196
AcvI	CACGTG	1 cut(s)	370
AfaI	GTAC	1 cut(s)	313
AfiI	CCNNNNNNNGG	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	367
AluBI	AGCT	1 cut(s)	282
AluI	AGCT	1 cut(s)	282
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	2 cut(s)	212, 355
AlwI	GGATC	3 cut(s)	183, 183, 196
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	4 cut(s)	292, 319, 342, 345
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	206, 373
AsuC2I	CCSGG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	188
BanII	GRGCYC	2 cut(s)	44, 284
BbrPI	CACGTG	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	4 cut(s)	279, 329, 331, 357
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	212, 355
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	343
BisI	GCNGC	6 cut(s)	76, 275, 293, 320, 343, 346
BlsI	GCNGC	6 cut(s)	77, 276, 294, 321, 344, 347
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	206, 373
BmiI	GGNNCC	4 cut(s)	41, 190, 207, 208
BmrFI	CCNGG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	370
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse118I	RCCGGY	2 cut(s)	295, 338
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	192
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	4 cut(s)	279, 329, 331, 357
BsgI	GTGCAG	4 cut(s)	55, 245, 319, 338
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	284
BsiSI	CCGG	4 cut(s)	70, 215, 296, 339
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	198
BsmAI	GTCTC	2 cut(s)	212, 355
BsmBI	CGTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	374
Bsp1286I	GDGCHC	2 cut(s)	44, 284
Bsp143I	GATC	4 cut(s)	133, 175, 188, 234
BspACI	CCGC	5 cut(s)	75, 117, 272, 275, 290
BspANI	GGCC	1 cut(s)	374
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	4 cut(s)	41, 190, 207, 208
BspMAI	CTGCAG	1 cut(s)	347
BspPI	GGATC	3 cut(s)	183, 183, 196
BsrFI	RCCGGY	2 cut(s)	295, 338
BssAI	RCCGGY	2 cut(s)	295, 338
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	4 cut(s)	133, 175, 188, 234
Bst4CI	ACNGT	2 cut(s)	223, 316
Bst6I	CTCTTC	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstBAI	YACGTR	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	308
BstDSI	CCRYGG	1 cut(s)	192
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	4 cut(s)	136, 178, 191, 237
BstMAI	GTCTC	2 cut(s)	212, 355
BstMBI	GATC	4 cut(s)	133, 175, 188, 234
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 342
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	343
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	4 cut(s)	279, 329, 331, 357
BstX2I	RGATCY	2 cut(s)	175, 188
BstYI	RGATCY	2 cut(s)	175, 188
BsuRI	GGCC	1 cut(s)	374
BtgI	CCRYGG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	297
CfoI	GCGC	1 cut(s)	75
Cfr10I	RCCGGY	2 cut(s)	295, 338
Cfr13I	GGNCC	2 cut(s)	206, 373
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	312
CviJI	RGCY	8 cut(s)	42, 83, 257, 282, 299, 307, 342, 374
CviKI_1	RGCY	8 cut(s)	42, 83, 257, 282, 299, 307, 342, 374
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	4 cut(s)	135, 177, 190, 236
DpnII	GATC	4 cut(s)	133, 175, 188, 234
DraI	TTTAAA	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
EciI	GGCGGA	2 cut(s)	132, 261
Ecl136II	GAGCTC	1 cut(s)	282
Eco24I	GRGCYC	2 cut(s)	44, 284
Eco47I	GGWCC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	282
Eco72I	CACGTG	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	206
EcoT38I	GRGCYC	2 cut(s)	44, 284
Esp3I	CGTCTC	1 cut(s)	355
FaiI	YATR	1 cut(s)	264
FaqI	GGGAC	1 cut(s)	219
Fnu4HI	GCNGC	6 cut(s)	76, 275, 293, 320, 343, 346
FriOI	GRGCYC	2 cut(s)	44, 284
Fsp4HI	GCNGC	6 cut(s)	76, 275, 293, 320, 343, 346
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	6 cut(s)	76, 275, 293, 320, 343, 346
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	4 cut(s)	70, 215, 296, 339
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	1 cut(s)	75
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	4 cut(s)	70, 215, 296, 339
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	5 cut(s)	29, 138, 169, 175, 380
Hpy188III	TCNNGA	1 cut(s)	352
Hpy8I	GTNNAC	1 cut(s)	365
Hpy99I	CGWCG	1 cut(s)	384
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	2 cut(s)	223, 316
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	6 cut(s)	36, 226, 245, 319, 336, 345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 342
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	369
HspAI	GCGC	1 cut(s)	73
KflI	GGGWCCC	1 cut(s)	206
KroI	GCCGGC	1 cut(s)	295
KroNI	GCCGGC	1 cut(s)	297
Kzo9I	GATC	4 cut(s)	133, 175, 188, 234
LmnI	GCTCC	3 cut(s)	39, 72, 287
LpnPI	CCDG	8 cut(s)	22, 83, 164, 184, 228, 309, 339, 352
Lsp1109I	GCAGC	4 cut(s)	279, 329, 331, 357
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	369
MalI	GATC	4 cut(s)	135, 177, 190, 236
MboI	GATC	4 cut(s)	133, 175, 188, 234
MboII	GAAGA	2 cut(s)	113, 138
MflI	RGATCY	2 cut(s)	175, 188
MhlI	GDGCHC	2 cut(s)	44, 284
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	5 cut(s)	73, 106, 138, 142, 386
MroNI	GCCGGC	1 cut(s)	295
MseI	TTAA	2 cut(s)	86, 251
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	4 cut(s)	70, 215, 296, 339
MspR9I	CCNGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	263, 342
NaeI	GCCGGC	1 cut(s)	297
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	4 cut(s)	133, 175, 188, 234
NgoMIV	GCCGGC	1 cut(s)	295
NlaIV	GGNNCC	4 cut(s)	41, 190, 207, 208
NmeAIII	GCCGAG	1 cut(s)	303
PdiI	GCCGGC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	6 cut(s)	77, 276, 294, 321, 344, 347
PmaCI	CACGTG	1 cut(s)	370
PmlI	CACGTG	1 cut(s)	370
Ppu21I	YACGTR	1 cut(s)	370
PpuMI	RGGWCCY	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	284
Psp5II	RGGWCCY	1 cut(s)	206
PspCI	CACGTG	1 cut(s)	370
PspN4I	GGNNCC	4 cut(s)	41, 190, 207, 208
PspPI	GGNCC	2 cut(s)	206, 373
PspPPI	RGGWCCY	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	347
PsuI	RGATCY	2 cut(s)	175, 188
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
SacI	GAGCTC	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	86, 251
SatI	GCNGC	6 cut(s)	76, 275, 293, 320, 343, 346
Sau3AI	GATC	4 cut(s)	133, 175, 188, 234
Sau96I	GGNCC	2 cut(s)	206, 373
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	2 cut(s)	44, 284
SetI	ASST	5 cut(s)	57, 203, 243, 284, 372
SfcI	CTRYAG	1 cut(s)	343
SinI	GGWCC	1 cut(s)	206
SsiI	CCGC	5 cut(s)	75, 117, 272, 275, 290
SspMI	CTAG	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	223, 316
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	1 cut(s)	353
TauI	GCSGC	2 cut(s)	78, 277
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	2 cut(s)	86, 251
Tru9I	TTAA	2 cut(s)	86, 251
TscAI	CASTG	1 cut(s)	228
TseI	GCWGC	4 cut(s)	292, 319, 342, 345
TspGWI	ACGGA	2 cut(s)	113, 209
TspRI	CASTG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.