AT4G03170

BEST Arabidopsis thaliana protein match is AP2 B3-like transcriptional factor family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002989
Physical Location & Seq
Forward (+)
1400832 .. 1401584
753 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03170.1

Sequence Viewer

Length: 753 bp
ATGGCGAATTCAACAGGTAAACCGACAAGTTCAACACAAGAAGATGAAGAAGCTACCTCGGCTACAGAAATATTAGCACAATTGATGCAAGATATTATAGATCGTGAAGAGGATATAGATGATGAAGACGATATAGATGACGAGGTTATAGATGATGAAGACTATGAGGTTGCGTCCCTTCCATTATTACAAGAAAGCCAAGCTAATCAAAAGCAGTCTAGGGAGAGGGAAGAAGAAACTGAAAAAAATCAACCTAAGAGGTTTAAGAAACAGAACATGATGAAAATAAATATCCATGACTTTTCAGAAGAAACTCTGAGGTTAATTGAGGTATGGTACGAAGCTGAACTCGATCCACAAGATATATTCGGCGATAATGAGGTGACGAGGCTATTCAGCAGACCGATAAAGAAGCAGTTGATGTCGAGCGATGTCGATAAAGATCAATGCATGCTCATGTTATCGAAGGAGCAAGTGAAGGAGAAGATGCTTCCTTTTCTAGAAGATTCAGAGAATCCGGTAAAGGGGATTGATGTTTCGGTGTATGGACCAGACGGGAAAGTTCAACAGATGGAGTTCAAGATGTGGAATGGGGATAAAACACCTGTGTTAACTTCAGGGTGGAAGCAGTTTGTGGAAGATTATGGTCTTTCGATGACTTGTGATTTTGTCACTGTTTGGATGTTTAGGCACATAAAGACTCGAAAGCTTTGCTTTGCTATTCACTACGTTAAATTTTCTTTAAGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3 NAM

Protein Analysis

250

Amino Acids

29.23

Weight (kDa)

4.49

Isoelectric Point (pI)

56.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 138 - 241 4.1e-08 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 347
AcsI RAATTY 2 cut(s) 7, 734
AcuI CTGAAG 1 cut(s) 600
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 524
AgsI TTSAA 4 cut(s) 12, 33, 566, 580
AluBI AGCT 4 cut(s) 53, 203, 344, 709
AluI AGCT 4 cut(s) 53, 203, 344, 709
AlwI GGATC 1 cut(s) 347
ApoI RAATTY 2 cut(s) 7, 734
AspS9I GGNCC 1 cut(s) 548
AsuHPI GGTGA 1 cut(s) 394
AvaII GGWCC 1 cut(s) 548
BbsI GAAGAC 2 cut(s) 132, 165
BccI CCATC 1 cut(s) 565
BcgI CGANNNNNNTGC 2 cut(s) 693, 727
BfaI CTAG 2 cut(s) 219, 500
BfmI CTRYAG 1 cut(s) 63
Bme18I GGWCC 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 548
BmsI GCATC 2 cut(s) 75, 477
BpiI GAAGAC 2 cut(s) 132, 165
BsaBI GATNNNNATC 1 cut(s) 441
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 517
Bsc4I CCNNNNNNNGG 1 cut(s) 524
Bse8I GATNNNNATC 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 687
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 1 cut(s) 524
BseMII CTCAG 1 cut(s) 308
BsiSI CCGG 1 cut(s) 518
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 160
Bsp143I GATC 3 cut(s) 100, 352, 442
BspCNI CTCAG 1 cut(s) 309
BspPI GGATC 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 3 cut(s) 100, 352, 442
Bst4CI ACNGT 1 cut(s) 676
Bst6I CTCTTC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 452
BstDEI CTNAG 2 cut(s) 255, 317
BstF5I GGATG 1 cut(s) 687
BstKTI GATC 3 cut(s) 103, 355, 445
BstMBI GATC 3 cut(s) 100, 352, 442
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 454
BstSFI CTRYAG 1 cut(s) 63
BstV2I GAAGAC 2 cut(s) 132, 165
BtgZI GCGATG 1 cut(s) 444
BtsCI GGATG 1 cut(s) 687
BtsIMutI CAGTG 1 cut(s) 672
Cac8I GCNNGC 1 cut(s) 452
Cfr13I GGNCC 1 cut(s) 548
CseI GACGC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 337
CviAII CATG 4 cut(s) 277, 296, 451, 457
CviJI RGCY 7 cut(s) 53, 62, 198, 203, 344, 391, 709
CviKI_1 RGCY 7 cut(s) 53, 62, 198, 203, 344, 391, 709
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 2 cut(s) 255, 317
DpnI GATC 3 cut(s) 102, 354, 444
DpnII GATC 3 cut(s) 100, 352, 442
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 548
Eco57I CTGAAG 1 cut(s) 600
EcoRI GAATTC 1 cut(s) 7
EcoT22I ATGCAT 1 cut(s) 452
FaeI CATG 4 cut(s) 280, 299, 454, 460
FalI AAGNNNNNCTT 2 cut(s) 698, 730
FaqI GGGAC 1 cut(s) 160
FatI CATG 4 cut(s) 276, 295, 450, 456
FokI GGATG 1 cut(s) 694
FspBI CTAG 2 cut(s) 219, 500
HapII CCGG 1 cut(s) 518
HgaI GACGC 1 cut(s) 162
Hin1II CATG 4 cut(s) 280, 299, 454, 460
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 3 cut(s) 506, 514, 700
HpaI GTTAAC 1 cut(s) 612
HpaII CCGG 1 cut(s) 518
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 2 cut(s) 20, 612
Hpy188I TCNGA 3 cut(s) 307, 318, 511
Hpy188III TCNNGA 3 cut(s) 104, 500, 580
Hpy8I GTNNAC 2 cut(s) 20, 612
HpyAV CCTTC 3 cut(s) 188, 460, 472
HpyCH4III ACNGT 1 cut(s) 676
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 2 cut(s) 88, 450
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 2 cut(s) 255, 317
HpySE526I ACGT 1 cut(s) 729
Hsp92II CATG 4 cut(s) 280, 299, 454, 460
KspAI GTTAAC 1 cut(s) 612
Kzo9I GATC 3 cut(s) 100, 352, 442
LmnI GCTCC 1 cut(s) 469
LpnPI CCDG 4 cut(s) 531, 564, 603, 618
LweI GCATC 2 cut(s) 75, 477
MaeI CTAG 2 cut(s) 219, 500
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 2 cut(s) 382, 670
MalI GATC 3 cut(s) 102, 354, 444
MboI GATC 3 cut(s) 100, 352, 442
MfeI CAATTG 1 cut(s) 80
MluCI AATT 4 cut(s) 7, 80, 324, 734
MlyI GAGTC 1 cut(s) 694
Mph1103I ATGCAT 1 cut(s) 452
MseI TTAA 6 cut(s) 264, 323, 611, 732, 743, 751
MslI CAYNNNNRTG 1 cut(s) 455
MspI CCGG 1 cut(s) 518
MunI CAATTG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 3 cut(s) 100, 352, 442
NlaIII CATG 4 cut(s) 280, 299, 454, 460
NmeAIII GCCGAG 1 cut(s) 38
NmuCI GTSAC 2 cut(s) 382, 670
NsiI ATGCAT 1 cut(s) 452
NspI RCATGY 1 cut(s) 454
PaeI GCATGC 1 cut(s) 454
PfeI GAWTC 2 cut(s) 506, 514
PleI GAGTC 1 cut(s) 694
PpsI GAGTC 1 cut(s) 694
PspPI GGNCC 1 cut(s) 548
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 1 cut(s) 455
SaqAI TTAA 6 cut(s) 264, 323, 611, 732, 743, 751
Sau3AI GATC 3 cut(s) 100, 352, 442
Sau96I GGNCC 1 cut(s) 548
SchI GAGTC 1 cut(s) 694
SfaNI GCATC 2 cut(s) 75, 477
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 455
SphI GCATGC 1 cut(s) 454
Sse9I AATT 4 cut(s) 7, 80, 324, 734
SspI AATATT 1 cut(s) 72
SspMI CTAG 2 cut(s) 219, 500
TaaI ACNGT 1 cut(s) 676
TaiI ACGT 1 cut(s) 732
TaqI TCGA 6 cut(s) 351, 425, 435, 464, 653, 703
TaqII GACCGA 1 cut(s) 418
TasI AATT 4 cut(s) 7, 80, 324, 734
TfiI GAWTC 2 cut(s) 506, 514
Tru1I TTAA 6 cut(s) 264, 323, 611, 732, 743, 751
Tru9I TTAA 6 cut(s) 264, 323, 611, 732, 743, 751
TscAI CASTG 1 cut(s) 679
TseFI GTSAC 2 cut(s) 382, 670
Tsp45I GTSAC 2 cut(s) 382, 670
TspDTI ATGAA 4 cut(s) 60, 138, 171, 296
TspRI CASTG 1 cut(s) 679
VpaK11BI GGWCC 1 cut(s) 548
XapI RAATTY 2 cut(s) 7, 734
XbaI TCTAGA 1 cut(s) 499
XceI RCATGY 1 cut(s) 454
XspI CTAG 2 cut(s) 219, 500
Zsp2I ATGCAT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.