Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000319.1

Orthogroup ID

OG0002989

Physical Location & Seq

Genomic Coordinates Reverse (-)

50370 .. 51179

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000319.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgtcttcgagtatgagtttggggaagagctctagggcacccatgactagtcttaccgatgaaaaagatatcaaggccgcttttagtctttgctttatgaagcatgtggtgcttgattctgaaaaagagatacagaaattggaggacacgaagcgcaagtctgttggccatattagggtatacccgaatcccgaaaccaaaccaagggcactgcaaatcgaaaaacaagaggaagacactgtcaatgttgcacaaggcttgtccagaaagcagcaactacaacaaggtcctatgcggaaagcggtgcacactgaagaacaagaagctatgaatggagcaaaaccacagcaaggtttgttctatggagactatacccctcctaatctcccaccagtcccaagcctacacaaattgatcgaaatttgcagcgagccttttgagaagcaattgacatgtagtgatgtgagggatgaccagtcaaggctagctatgagcaaagaagatgtgcaaaagcatctaatgccattgttgaatgagagtgaagatcttaacgaaggaattgacgtgacgacttataatttggctggtaaggagtaccccatgaagttcaaaacttgggtgtccaagattcatgtcttaactggaggatggaaagctttctgccgagatcatcaattggttcagacacaacattttgtcacagtgtggatgtttcggaatattgcaacccgcaatctttgcttcgtaatcgaggtgagaaggttgccggtgtttgaaaccatcaagagaagaagaatacggcagaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

269

Amino Acids

31.01

Weight (kDa)

8.99

Isoelectric Point (pI)

64.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20600 AT4G03160 AT4G03170
fragaria_vesca	FvH4_1g16231 FvH4_1g24261 FvH4_5g06160
malus_domestica	MD00G1107900.v1.1 MD02G1059300.v1.1 MD02G1060300.v1.1 MD15G1316300.v1.1
prunus_persica	Prupe.7G223800_v2.0.a1 Prupe.7G223900_v2.0.a1 Prupe.7G224000_v2.0.a1 Prupe.7G224100_v2.0.a1
pyrus_communis	pycom15g22210
rosa_chinensis	RchiOBHm_Chr2g0120751 RchiOBHm_Chr7g0192641
rosa_laevigata	RLG00000004339 RLG00000004342 RLG00000018577
rosa_multiflora	Rmu_co8184858.1_g000001 Rmu_sc0000319.1_g000009 Rmu_sc0002040.1_g000002 Rmu_sc0035522.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123120 Rroxscaffold_3G00262810
rosa_rugosa	Rorug02G0230700 Rorug07G0003400
rosa_samantha	Rh2AG287400 Rh2BG298900 Rh2CG276800 Rh2DG312700 Rh7AG128400 Rh7BG130000 Rh7CG133300 Rh7DG131000
rosa_wichuraiana	Rw2G023050 Rw7G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	576
AccB1I	GGYRCC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	4 cut(s)	78, 295, 302, 730
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	420
AcuI	CTGAAG	1 cut(s)	333
AdeI	CACNNNGTG	1 cut(s)	705
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	3 cut(s)	175, 204, 350
AflIII	ACRYGT	1 cut(s)	452
AgsI	TTSAA	3 cut(s)	532, 610, 776
AhlI	ACTAGT	1 cut(s)	47
AjiI	CACGTC	1 cut(s)	565
AluBI	AGCT	4 cut(s)	30, 326, 488, 656
AluI	AGCT	4 cut(s)	30, 326, 488, 656
Alw21I	GWGCWC	2 cut(s)	32, 309
Alw26I	GTCTC	1 cut(s)	360
Alw44I	GTGCAC	1 cut(s)	305
AoxI	GGCC	2 cut(s)	75, 166
ApaLI	GTGCAC	1 cut(s)	305
ApeKI	GCWGC	2 cut(s)	271, 426
ApoI	RAATTY	1 cut(s)	420
ArsI	GACNNNNNNTTYG	4 cut(s)	143, 175, 562, 594
Asp700I	GAANNNNTTC	1 cut(s)	656
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	766
AsuNHI	GCTAGC	1 cut(s)	484
AvaII	GGWCC	1 cut(s)	287
BaeGI	GKGCMC	3 cut(s)	40, 211, 309
BalI	TGGCCA	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	2 cut(s)	32, 309
BbvI	GCAGC	2 cut(s)	283, 438
BccI	CCATC	2 cut(s)	642, 788
BcoDI	GTCTC	1 cut(s)	360
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	3 cut(s)	33, 48, 485
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	3 cut(s)	78, 272, 427
BlsI	GCNGC	3 cut(s)	79, 273, 428
Bme18I	GGWCC	1 cut(s)	287
BmgBI	CACGTC	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	39
BmsI	GCATC	1 cut(s)	523
BmtI	GCTAGC	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	663
BsaJI	CCNNGG	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 204, 350
Bse118I	RCCGGY	1 cut(s)	766
Bse1I	ACTGG	3 cut(s)	392, 475, 646
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	3 cut(s)	475, 653, 714
BseLI	CCNNNNNNNGG	3 cut(s)	175, 204, 350
BseNI	ACTGG	3 cut(s)	392, 475, 646
BseSI	GKGCMC	3 cut(s)	40, 211, 309
BseXI	GCAGC	2 cut(s)	283, 438
BshFI	GGCC	2 cut(s)	77, 168
BshNI	GGYRCC	1 cut(s)	37
BsiHKAI	GWGCWC	2 cut(s)	32, 309
BsiSI	CCGG	1 cut(s)	767
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	3 cut(s)	175, 204, 350
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	2 cut(s)	77, 168
Bsp1286I	GDGCHC	4 cut(s)	32, 40, 211, 309
Bsp143I	GATC	3 cut(s)	414, 544, 667
BspACI	CCGC	4 cut(s)	78, 295, 302, 730
BspANI	GGCC	2 cut(s)	77, 168
BspLI	GGNNCC	1 cut(s)	39
BspOI	GCTAGC	1 cut(s)	488
BspQI	GCTCTTC	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	766
BsrI	ACTGG	3 cut(s)	392, 475, 646
BssAI	RCCGGY	1 cut(s)	766
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	3 cut(s)	414, 544, 667
BssNAI	GTATAC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	203
Bst1107I	GTATAC	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	241, 703
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	3 cut(s)	109, 520, 738
BstC8I	GCNNGC	2 cut(s)	431, 486
BstF5I	GGATG	3 cut(s)	475, 653, 714
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	3 cut(s)	417, 547, 670
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	3 cut(s)	414, 544, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 520, 738
BstNSI	RCATGY	2 cut(s)	107, 456
BstSLI	GKGCMC	3 cut(s)	40, 211, 309
BstV1I	GCAGC	2 cut(s)	283, 438
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BstZ17I	GTATAC	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	77, 168
BtrI	CACGTC	1 cut(s)	565
BtsCI	GGATG	3 cut(s)	475, 653, 714
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	4 cut(s)	209, 237, 309, 708
Cac8I	GCNNGC	2 cut(s)	431, 486
CfoI	GCGC	1 cut(s)	156
Cfr10I	RCCGGY	1 cut(s)	766
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	595
CviAII	CATG	5 cut(s)	43, 104, 453, 601, 632
CviQI	GTAC	1 cut(s)	595
DpnI	GATC	3 cut(s)	416, 546, 669
DpnII	GATC	3 cut(s)	414, 544, 667
DraIII	CACNNNGTG	1 cut(s)	705
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	5 cut(s)	46, 107, 456, 604, 635
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	5 cut(s)	42, 103, 452, 600, 631
FauI	CCCGC	1 cut(s)	737
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	78, 272, 427
FokI	GGATG	3 cut(s)	482, 660, 721
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	3 cut(s)	78, 272, 427
FspBI	CTAG	3 cut(s)	33, 48, 485
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	3 cut(s)	78, 272, 427
GsuI	CTGGAG	1 cut(s)	663
HaeIII	GGCC	2 cut(s)	77, 168
HapII	CCGG	1 cut(s)	767
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	5 cut(s)	46, 107, 456, 604, 635
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	654
HinfI	GANTC	3 cut(s)	116, 187, 628
HpaII	CCGG	1 cut(s)	767
HphI	GGTGA	1 cut(s)	766
Hpy166II	GTNNAC	2 cut(s)	181, 307
Hpy188I	TCNGA	3 cut(s)	121, 684, 717
Hpy188III	TCNNGA	3 cut(s)	191, 264, 784
Hpy8I	GTNNAC	2 cut(s)	181, 307
HpyAV	CCTTC	2 cut(s)	548, 753
HpyCH4III	ACNGT	2 cut(s)	241, 703
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	6 cut(s)	214, 251, 307, 426, 508, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 520, 738
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	5 cut(s)	46, 107, 456, 604, 635
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	414, 544, 667
LguI	GCTCTTC	1 cut(s)	20
LmnI	GCTCC	1 cut(s)	335
LpnPI	CCDG	6 cut(s)	277, 405, 488, 570, 627, 780
Lsp1109I	GCAGC	2 cut(s)	283, 438
LweI	GCATC	1 cut(s)	523
MaeI	CTAG	3 cut(s)	33, 48, 485
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	2 cut(s)	565, 697
MalI	GATC	3 cut(s)	416, 546, 669
MboI	GATC	3 cut(s)	414, 544, 667
MboII	GAAGA	7 cut(s)	37, 245, 326, 512, 554, 801, 804
MfeI	CAATTG	2 cut(s)	446, 674
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	4 cut(s)	32, 40, 211, 309
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	8 cut(s)	137, 410, 420, 446, 558, 577, 674, 805
MluNI	TGGCCA	1 cut(s)	168
MnlI	CCTC	6 cut(s)	136, 223, 387, 459, 638, 745
Mox20I	TGGCCA	1 cut(s)	168
MroXI	GAANNNNTTC	1 cut(s)	656
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	2 cut(s)	549, 638
Msp20I	TGGCCA	1 cut(s)	168
MspI	CCGG	1 cut(s)	767
MunI	CAATTG	2 cut(s)	446, 674
MwoI	GCNNNNNNNGC	3 cut(s)	109, 520, 738
NdeII	GATC	3 cut(s)	414, 544, 667
NheI	GCTAGC	1 cut(s)	484
NlaIII	CATG	5 cut(s)	46, 107, 456, 604, 635
NlaIV	GGNNCC	1 cut(s)	39
NmeAIII	GCCGAG	1 cut(s)	689
NmuCI	GTSAC	2 cut(s)	565, 697
NspI	RCATGY	2 cut(s)	107, 456
PciI	ACATGT	1 cut(s)	452
PciSI	GCTCTTC	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	656
PfeI	GAWTC	3 cut(s)	116, 187, 628
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	3 cut(s)	79, 273, 428
PpuMI	RGGWCCY	1 cut(s)	287
PscI	ACATGT	1 cut(s)	452
PsiI	TTATAA	1 cut(s)	576
Psp124BI	GAGCTC	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	287
PspPPI	RGGWCCY	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	544
PsyI	GACNNNGTC	1 cut(s)	239
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
SacI	GAGCTC	1 cut(s)	32
SapI	GCTCTTC	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	549, 638
SatI	GCNGC	3 cut(s)	78, 272, 427
Sau3AI	GATC	3 cut(s)	414, 544, 667
Sau96I	GGNCC	1 cut(s)	287
SduI	GDGCHC	4 cut(s)	32, 40, 211, 309
SetI	ASST	9 cut(s)	32, 289, 328, 355, 490, 567, 658, 756, 764
SfaNI	GCATC	1 cut(s)	523
SinI	GGWCC	1 cut(s)	287
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	8 cut(s)	137, 410, 420, 446, 558, 577, 674, 805
SsiI	CCGC	4 cut(s)	78, 295, 302, 730
SspI	AATATT	1 cut(s)	721
SspMI	CTAG	3 cut(s)	33, 48, 485
SstI	GAGCTC	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	2 cut(s)	241, 703
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	4 cut(s)	8, 219, 417, 750
TasI	AATT	8 cut(s)	137, 410, 420, 446, 558, 577, 674, 805
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	3 cut(s)	116, 187, 628
Tru1I	TTAA	2 cut(s)	549, 638
Tru9I	TTAA	2 cut(s)	549, 638
TscAI	CASTG	4 cut(s)	216, 244, 316, 708
TseFI	GTSAC	2 cut(s)	565, 697
TseI	GCWGC	2 cut(s)	271, 426
Tsp45I	GTSAC	2 cut(s)	565, 697
TspDTI	ATGAA	5 cut(s)	75, 113, 344, 617, 620
TspRI	CASTG	4 cut(s)	216, 244, 316, 708
Tth111I	GACNNNGTC	1 cut(s)	239
VneI	GTGCAC	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	420
XceI	RCATGY	2 cut(s)	107, 456
XmiI	GTMKAC	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	656
XspI	CTAG	3 cut(s)	33, 48, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.