Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002989

Physical Location & Seq

Genomic Coordinates Forward (+)

16311433 .. 16312031

Gene Structure 599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g22210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCCTGAACAACGACAAGAACTTGGACTAGGTCGGTCTTATGGAAATTATGTACCTCCTGATCTCCTGCCACCAGTCCCAAGCCTCCGAGGCTCCATTCAGTTTCAAGAACATGCTGCCTCTCATGTCTTGCAAGCCAAAAAAGTCATTGCAACACAAGGCATTCCCAAACAGCCTCCAGAACTAGGACCAGGTTGCTACTGTGAAAATCAGAATTCTGTCCTTAATGATGCCCCATCATTTCCAAGCTTCAAGCACTCAATTCAACTTCAAGAACCTGTAATTCCACAAGCCCAGCAATCCCAAAAAGCCATTGCTGCTGAACAAGACCTCAACTACAAAATTGTCAACTACATCCCTCCTGATATCCCACCAGTCCCAAGCATCCAACACCTGATTCAAATATGCAGCAAGCCTTTTGAGAAGCAGTTGATGCAAAACAATGTGACGCGAGACTTAAGGCTGAAGGATTGTGATGTAGAAACGCATATCTTGCCGTTGTTGAAACCATCTGAAGACCCTAAACAAGATGAATTTCAAGGCCACAAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

185

Amino Acids

20.62

Weight (kDa)

6.05

Isoelectric Point (pI)

62.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20600 AT4G03160 AT4G03170
fragaria_vesca	FvH4_1g16231 FvH4_1g24261 FvH4_5g06160
malus_domestica	MD00G1107900.v1.1 MD02G1059300.v1.1 MD02G1060300.v1.1 MD15G1316300.v1.1
prunus_persica	Prupe.7G223800_v2.0.a1 Prupe.7G223900_v2.0.a1 Prupe.7G224000_v2.0.a1 Prupe.7G224100_v2.0.a1
pyrus_communis	pycom15g22210
rosa_chinensis	RchiOBHm_Chr2g0120751 RchiOBHm_Chr7g0192641
rosa_laevigata	RLG00000004339 RLG00000004342 RLG00000018577
rosa_multiflora	Rmu_co8184858.1_g000001 Rmu_sc0000319.1_g000009 Rmu_sc0002040.1_g000002 Rmu_sc0035522.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123120 Rroxscaffold_3G00262810
rosa_rugosa	Rorug02G0230700 Rorug07G0003400
rosa_samantha	Rh2AG287400 Rh2BG298900 Rh2CG276800 Rh2DG312700 Rh7AG128400 Rh7BG130000 Rh7CG133300 Rh7DG131000
rosa_wichuraiana	Rw2G023050 Rw7G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	451
AcsI	RAATTY	2 cut(s)	214, 533
AcuI	CTGAAG	2 cut(s)	485, 534
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	185
AflII	CTTAAG	1 cut(s)	457
AgsI	TTSAA	7 cut(s)	107, 253, 266, 272, 401, 505, 539
AjnI	CCWGG	1 cut(s)	190
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AluBI	AGCT	1 cut(s)	249
AluI	AGCT	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	447
AoxI	GGCC	1 cut(s)	541
ApeKI	GCWGC	3 cut(s)	116, 317, 408
ApoI	RAATTY	2 cut(s)	214, 533
AspS9I	GGNCC	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	522
BbvI	GCAGC	3 cut(s)	103, 304, 420
BccI	CCATC	2 cut(s)	244, 517
BceAI	ACGGC	1 cut(s)	481
BciT130I	CCWGG	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	2 cut(s)	29, 185
BfrI	CTTAAG	1 cut(s)	457
BglI	GCCNNNNNGGC	1 cut(s)	90
BisI	GCNGC	3 cut(s)	117, 318, 409
BlsI	GCNGC	3 cut(s)	118, 319, 410
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	192
BmsI	GCATC	3 cut(s)	220, 393, 423
BpiI	GAAGAC	1 cut(s)	522
BpmI	CTGGAG	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	74, 374
Bse3DI	GCAATG	2 cut(s)	147, 312
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	2 cut(s)	354, 384
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	2 cut(s)	147, 312
BseNI	ACTGG	2 cut(s)	74, 374
BseXI	GCAGC	3 cut(s)	103, 304, 420
BseYI	CCCAGC	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	451
BshFI	GGCC	1 cut(s)	543
BslFI	GGGAC	2 cut(s)	62, 362
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	447
BsmFI	GGGAC	2 cut(s)	62, 362
BsmI	GAATGC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	543
Bsp143I	GATC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	543
BspFNI	CGCG	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	94
BspTI	CTTAAG	1 cut(s)	457
BsrDI	GCAATG	2 cut(s)	147, 312
BsrI	ACTGG	2 cut(s)	74, 374
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	203
BstAFI	CTTAAG	1 cut(s)	457
BstAPI	GCANNNNNTGC	2 cut(s)	433, 493
BstC8I	GCNNGC	2 cut(s)	135, 413
BstF5I	GGATG	2 cut(s)	354, 384
BstFNI	CGCG	1 cut(s)	451
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 317, 433, 493
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	190
BstUI	CGCG	1 cut(s)	451
BstV1I	GCAGC	3 cut(s)	103, 304, 420
BstV2I	GAAGAC	1 cut(s)	522
BsuRI	GGCC	1 cut(s)	543
BtsCI	GGATG	2 cut(s)	354, 384
Cac8I	GCNNGC	2 cut(s)	135, 413
Cfr13I	GGNCC	1 cut(s)	188
CseI	GACGC	1 cut(s)	457
CsiI	ACCWGGT	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	2 cut(s)	113, 125
CviQI	GTAC	1 cut(s)	53
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eco32I	GATATC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	188
Eco57I	CTGAAG	2 cut(s)	485, 534
EcoRI	GAATTC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	190
EcoRV	GATATC	1 cut(s)	367
FaeI	CATG	2 cut(s)	116, 128
FaiI	YATR	6 cut(s)	42, 51, 114, 126, 406, 489
FaqI	GGGAC	2 cut(s)	62, 362
FatI	CATG	2 cut(s)	112, 124
Fnu4HI	GCNGC	3 cut(s)	117, 318, 409
FokI	GGATG	2 cut(s)	341, 371
Fsp4HI	GCNGC	3 cut(s)	117, 318, 409
FspBI	CTAG	2 cut(s)	29, 185
GluI	GCNGC	3 cut(s)	117, 318, 409
GsaI	CCCAGC	1 cut(s)	298
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	543
HgaI	GACGC	1 cut(s)	457
Hin1II	CATG	2 cut(s)	116, 128
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	247
HinfI	GANTC	1 cut(s)	397
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	3 cut(s)	89, 213, 514
Hpy188III	TCNNGA	5 cut(s)	59, 107, 179, 272, 362
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	1 cut(s)	460
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	4 cut(s)	133, 152, 408, 436
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 317, 433, 493
Hsp92II	CATG	2 cut(s)	116, 128
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	3 cut(s)	103, 304, 420
LweI	GCATC	3 cut(s)	220, 393, 423
MabI	ACCWGGT	1 cut(s)	190
MaeI	CTAG	2 cut(s)	29, 185
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	527
MluCI	AATT	7 cut(s)	46, 214, 261, 282, 342, 533, 550
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	7 cut(s)	66, 83, 95, 130, 186, 341, 369
MseI	TTAA	2 cut(s)	225, 458
MspCI	CTTAAG	1 cut(s)	457
MspR9I	CCNGG	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	192
MvnI	CGCG	1 cut(s)	451
MwoI	GCNNNNNNNGC	4 cut(s)	90, 317, 433, 493
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	116, 128
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	445
NspI	RCATGY	1 cut(s)	116
PctI	GAATGC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	397
PflFI	GACNNNGTC	1 cut(s)	30
PkrI	GCNGC	3 cut(s)	118, 319, 410
Psp6I	CCWGG	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	188
PsyI	GACNNNGTC	1 cut(s)	30
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	225, 458
SatI	GCNGC	3 cut(s)	117, 318, 409
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	192
SetI	ASST	7 cut(s)	34, 58, 196, 251, 280, 333, 396
SexAI	ACCWGGT	1 cut(s)	190
SfaNI	GCATC	3 cut(s)	220, 393, 423
SinI	GGWCC	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	457
SmoI	CTYRAG	1 cut(s)	457
Sse9I	AATT	7 cut(s)	46, 214, 261, 282, 342, 533, 550
SspMI	CTAG	2 cut(s)	29, 185
StyD4I	CCNGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	203
TaqII	GACCGA	1 cut(s)	24
TasI	AATT	7 cut(s)	46, 214, 261, 282, 342, 533, 550
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	2 cut(s)	225, 458
Tru9I	TTAA	2 cut(s)	225, 458
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	3 cut(s)	116, 317, 408
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	1 cut(s)	546
Tth111I	GACNNNGTC	1 cut(s)	30
Vha464I	CTTAAG	1 cut(s)	457
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	2 cut(s)	214, 533
XceI	RCATGY	1 cut(s)	116
XspI	CTAG	2 cut(s)	29, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.