Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002989

Physical Location & Seq

Genomic Coordinates Forward (+)

19931715 .. 19932281

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G224100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTGCACAATCACAACAACTAGAACAAAGTTCGTCCTACAGAGGCTATGTCTCATTTGGCCTCCCACCAGTCCCAAGCCTCCAACACTCGACTCAATTTCAAGAACATGCAGCCCAAGAAGCCATTGCAGCTCTGCAAGTAGAACAAGGTTCGTTCTACGGAAGCTATACCCCTCCAGTCCCCCGAAGCCTCCAAAATTTGATCGGAAGGTGCAGCGAGCCTTTTGAGAAGCAGTTGTCAGGCACTGATGTGGCGTTGGGCTCAACTTCGCTGACCATTAGCAAAGAAGACGTGAAAAGGCACATCTTGCCATTGTTGAAGGCTAATGAAGTTCCTGAAGAAGGCATCCAGGTCACAGTGTATGACATTGCTGGTGAAGAGTACCCTATGCTGTTCAAACGCCGCCGCTATCGCTATTTCCTTGTAGGTCCAAAATGGAGACGTTTATATCAACGTCATGGCCTGGAAGGGGACCAACATTCTCTCACATTCTGGGCTTTCCGGAAGGTGCGACCTGAAAGCCTTTGCTTTGTCATCACTTGGAGAAGGTTGCCTGCCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

189

Amino Acids

21.56

Weight (kDa)

9.3

Isoelectric Point (pI)

67.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20600 AT4G03160 AT4G03170
fragaria_vesca	FvH4_1g16231 FvH4_1g24261 FvH4_5g06160
malus_domestica	MD00G1107900.v1.1 MD02G1059300.v1.1 MD02G1060300.v1.1 MD15G1316300.v1.1
prunus_persica	Prupe.7G223800_v2.0.a1 Prupe.7G223900_v2.0.a1 Prupe.7G224000_v2.0.a1 Prupe.7G224100_v2.0.a1
pyrus_communis	pycom15g22210
rosa_chinensis	RchiOBHm_Chr2g0120751 RchiOBHm_Chr7g0192641
rosa_laevigata	RLG00000004339 RLG00000004342 RLG00000018577
rosa_multiflora	Rmu_co8184858.1_g000001 Rmu_sc0000319.1_g000009 Rmu_sc0002040.1_g000002 Rmu_sc0035522.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123120 Rroxscaffold_3G00262810
rosa_rugosa	Rorug02G0230700 Rorug07G0003400
rosa_samantha	Rh2AG287400 Rh2BG298900 Rh2CG276800 Rh2DG312700 Rh7AG128400 Rh7BG130000 Rh7CG133300 Rh7DG131000
rosa_wichuraiana	Rw2G023050 Rw7G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	504
AciI	CCGC	2 cut(s)	406, 409
AcsI	RAATTY	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	2 cut(s)	344, 472
AgsI	TTSAA	3 cut(s)	104, 322, 400
AjiI	CACGTC	1 cut(s)	295
AjnI	CCWGG	3 cut(s)	351, 465, 560
AleI	CACNNNNGTG	1 cut(s)	251
AluBI	AGCT	2 cut(s)	134, 168
AluI	AGCT	2 cut(s)	134, 168
Alw26I	GTCTC	2 cut(s)	58, 436
AlwNI	CAGNNNCTG	1 cut(s)	248
Aor13HI	TCCGGA	1 cut(s)	504
AoxI	GGCC	2 cut(s)	61, 463
ApeKI	GCWGC	4 cut(s)	5, 113, 131, 216
ApoI	RAATTY	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	431, 475
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	431, 475
BanII	GRGCYC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	297
BbvI	GCAGC	3 cut(s)	125, 143, 228
BciT130I	CCWGG	3 cut(s)	353, 467, 562
BcoDI	GTCTC	2 cut(s)	58, 436
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	40
BisI	GCNGC	6 cut(s)	6, 114, 132, 217, 406, 409
BlsI	GCNGC	6 cut(s)	7, 115, 133, 218, 407, 410
Bme1390I	CCNGG	3 cut(s)	353, 467, 562
Bme18I	GGWCC	2 cut(s)	431, 475
BmgBI	CACGTC	1 cut(s)	295
BmgT120I	GGNCC	2 cut(s)	431, 475
BmiI	GGNNCC	1 cut(s)	476
BmrFI	CCNGG	3 cut(s)	353, 467, 562
BmsI	GCATC	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	504
Bsc4I	CCNNNNNNNGG	2 cut(s)	344, 472
Bse1I	ACTGG	2 cut(s)	71, 179
Bse3DI	GCAATG	2 cut(s)	126, 369
BseAI	TCCGGA	1 cut(s)	504
BseBI	CCWGG	3 cut(s)	353, 467, 562
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	2 cut(s)	344, 472
BseMI	GCAATG	2 cut(s)	126, 369
BseNI	ACTGG	2 cut(s)	71, 179
BseXI	GCAGC	3 cut(s)	125, 143, 228
BsgI	GTGCAG	1 cut(s)	235
BshFI	GGCC	2 cut(s)	63, 465
BsiSI	CCGG	1 cut(s)	505
BslFI	GGGAC	3 cut(s)	59, 167, 488
BslI	CCNNNNNNNGG	2 cut(s)	344, 472
BsmAI	GTCTC	2 cut(s)	58, 436
BsmBI	CGTCTC	1 cut(s)	436
BsmFI	GGGAC	3 cut(s)	59, 167, 488
BsnI	GGCC	2 cut(s)	63, 465
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp13I	TCCGGA	1 cut(s)	504
Bsp143I	GATC	1 cut(s)	204
BspACI	CCGC	2 cut(s)	406, 409
BspANI	GGCC	2 cut(s)	63, 465
BspEI	TCCGGA	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	476
BsrDI	GCAATG	2 cut(s)	126, 369
BsrI	ACTGG	2 cut(s)	71, 179
BssMI	GATC	1 cut(s)	204
Bst2UI	CCWGG	3 cut(s)	353, 467, 562
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	375
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstC8I	GCNNGC	2 cut(s)	221, 558
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	348
BstKTI	GATC	1 cut(s)	207
BstMAI	GTCTC	2 cut(s)	58, 436
BstMBI	GATC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 131, 310, 414
BstNI	CCWGG	3 cut(s)	353, 467, 562
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	3 cut(s)	351, 465, 560
BstSFI	CTRYAG	1 cut(s)	40
BstV1I	GCAGC	3 cut(s)	125, 143, 228
BstV2I	GAAGAC	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	63, 465
BtrI	CACGTC	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	246, 366
Cac8I	GCNNGC	2 cut(s)	221, 558
CaiI	CAGNNNCTG	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	431, 475
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	2 cut(s)	110, 461
CviQI	GTAC	1 cut(s)	385
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	266
Eco47I	GGWCC	2 cut(s)	431, 475
Eco57I	CTGAAG	1 cut(s)	360
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoRII	CCWGG	3 cut(s)	351, 465, 560
EcoT38I	GRGCYC	1 cut(s)	266
Esp3I	CGTCTC	1 cut(s)	436
FaeI	CATG	2 cut(s)	113, 464
FaiI	YATR	7 cut(s)	51, 111, 171, 366, 392, 451, 462
FaqI	GGGAC	3 cut(s)	59, 167, 488
FatI	CATG	2 cut(s)	109, 460
Fnu4HI	GCNGC	6 cut(s)	6, 114, 132, 217, 406, 409
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	6 cut(s)	6, 114, 132, 217, 406, 409
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	6 cut(s)	6, 114, 132, 217, 406, 409
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	63, 465
HapII	CCGG	1 cut(s)	505
Hin1II	CATG	2 cut(s)	113, 464
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	505
HphI	GGTGA	1 cut(s)	389
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	3 cut(s)	104, 338, 505
HpyAV	CCTTC	6 cut(s)	204, 316, 338, 464, 502, 543
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	3 cut(s)	294, 445, 457
HpyCH4V	TGCA	5 cut(s)	8, 113, 131, 139, 216
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 131, 310, 414
HpySE526I	ACGT	3 cut(s)	294, 445, 457
Hsp92II	CATG	2 cut(s)	113, 464
Kpn2I	TCCGGA	1 cut(s)	504
Kzo9I	GATC	1 cut(s)	204
Lsp1109I	GCAGC	3 cut(s)	125, 143, 228
LweI	GCATC	1 cut(s)	357
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	3 cut(s)	294, 445, 457
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	3 cut(s)	302, 353, 392
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	2 cut(s)	98, 199
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	5 cut(s)	38, 74, 92, 186, 203
MroI	TCCGGA	1 cut(s)	504
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	1 cut(s)	505
MspR9I	CCNGG	3 cut(s)	353, 467, 562
MvaI	CCWGG	3 cut(s)	353, 467, 562
MwoI	GCNNNNNNNGC	4 cut(s)	122, 131, 310, 414
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	2 cut(s)	113, 464
NlaIV	GGNNCC	1 cut(s)	476
NmuCI	GTSAC	1 cut(s)	355
NspI	RCATGY	1 cut(s)	113
OliI	CACNNNNGTG	1 cut(s)	251
PkrI	GCNGC	6 cut(s)	7, 115, 133, 218, 407, 410
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Psp6I	CCWGG	3 cut(s)	351, 465, 560
PspGI	CCWGG	3 cut(s)	351, 465, 560
PspN4I	GGNNCC	1 cut(s)	476
PspPI	GGNCC	2 cut(s)	431, 475
PstNI	CAGNNNCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
RseI	CAYNNNNRTG	1 cut(s)	251
SatI	GCNGC	6 cut(s)	6, 114, 132, 217, 406, 409
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	2 cut(s)	431, 475
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	3 cut(s)	353, 467, 562
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	1 cut(s)	357
SfcI	CTRYAG	1 cut(s)	40
SinI	GGWCC	2 cut(s)	431, 475
SmiMI	CAYNNNNRTG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	98, 199
SsiI	CCGC	2 cut(s)	406, 409
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	3 cut(s)	351, 465, 560
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	3 cut(s)	297, 448, 460
TaqI	TCGA	1 cut(s)	92
TasI	AATT	2 cut(s)	98, 199
TauI	GCSGC	2 cut(s)	408, 411
TscAI	CASTG	2 cut(s)	253, 366
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	4 cut(s)	5, 113, 131, 216
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	2 cut(s)	253, 366
VpaK11BI	GGWCC	2 cut(s)	431, 475
XagI	CCTNNNNNAGG	1 cut(s)	342
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	1 cut(s)	113
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.