Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002989

Physical Location & Seq

Genomic Coordinates Forward (+)

19926997 .. 19927773

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G223900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTAGTCGAGAAGACCGTGAAGACCCCGGTTATGGGGACGGAAAGATGACAAGCAGCACCGAGGAGGGTGCTTATCTTCTTCTACATTTAAAGCATACAATCTTGAATCCCGAAACAGCGAGAAATTTGGACCACATGAAGAGCAAAATTCTTTCTGGAATTAAGTTAAAGTCACCCAGCGGAAGTAAGCGAAAAGCACTACGAATCCAGGAACCTGAAGCCCCGCAAGCCCGAGAAGCCACTAATGGTGCTGCACGAAGACGAAGCTTACCTAGAGAACTGCAATTTCAACAACAAGAAAGAAGAGGTTTGTTCTACGGAAACTATACCCCTCCTGATTTGCCACCAATCCCAAGCCTACAAAACTTAATCCAAGATTGCAGTAAGCCTTTTGAGAAACAGCTAGCACGCAGTGATGTGAAAGATAACCAATGCAGGCTCTCCATGAACAAAGAAGATGTCGAAAATAACATCATGCCATTGTTGAGAAACGGTGAAAACCTTAATGAAGGCATCAATGTGACAACTTATGACATGACTGGCAACGAGTACCCAATGGTGTTCAAGATTTGGGCCACCAAGGTTCATGTCCTCACTGGAGGCTGGAAAACTTTCTGTAATGATCTCGGACTGGTTGAAAACCAGGATTTTGTGACCTTGTGGATTTTTCGCCATGTCGACAAAGGAGGCCTCTGCTTTGCAATCCATTCGAGAAGGTTGCCCGTGTTCGAACCCATCAAGAAAAAAAGACCGATAAGGCAGAATTACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

259

Amino Acids

29.6

Weight (kDa)

9.3

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20600 AT4G03160 AT4G03170
fragaria_vesca	FvH4_1g16231 FvH4_1g24261 FvH4_5g06160
malus_domestica	MD00G1107900.v1.1 MD02G1059300.v1.1 MD02G1060300.v1.1 MD15G1316300.v1.1
prunus_persica	Prupe.7G223800_v2.0.a1 Prupe.7G223900_v2.0.a1 Prupe.7G224000_v2.0.a1 Prupe.7G224100_v2.0.a1
pyrus_communis	pycom15g22210
rosa_chinensis	RchiOBHm_Chr2g0120751 RchiOBHm_Chr7g0192641
rosa_laevigata	RLG00000004339 RLG00000004342 RLG00000018577
rosa_multiflora	Rmu_co8184858.1_g000001 Rmu_sc0000319.1_g000009 Rmu_sc0002040.1_g000002 Rmu_sc0035522.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123120 Rroxscaffold_3G00262810
rosa_rugosa	Rorug02G0230700 Rorug07G0003400
rosa_samantha	Rh2AG287400 Rh2BG298900 Rh2CG276800 Rh2DG312700 Rh7AG128400 Rh7BG130000 Rh7CG133300 Rh7DG131000
rosa_wichuraiana	Rw2G023050 Rw7G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	681
AciI	CCGC	2 cut(s)	183, 227
AcsI	RAATTY	2 cut(s)	127, 150
AcuI	CTGAAG	1 cut(s)	240
AdeI	CACNNNGTG	1 cut(s)	416
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	2 cut(s)	35, 36
AgsI	TTSAA	4 cut(s)	109, 293, 568, 641
AjnI	CCWGG	2 cut(s)	210, 645
AluBI	AGCT	2 cut(s)	270, 406
AluI	AGCT	2 cut(s)	270, 406
Ama87I	CYCGRG	1 cut(s)	234
AoxI	GGCC	2 cut(s)	576, 691
ApeKI	GCWGC	2 cut(s)	57, 254
ApoI	RAATTY	2 cut(s)	127, 150
ArsI	GACNNNNNNTTYG	2 cut(s)	447, 479
Asp700I	GAANNNNTTC	1 cut(s)	614
AspS9I	GGNCC	2 cut(s)	133, 576
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	2 cut(s)	168, 509
AsuII	TTCGAA	1 cut(s)	732
AsuNHI	GCTAGC	1 cut(s)	406
AvaI	CYCGRG	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	133
BbsI	GAAGAC	3 cut(s)	21, 30, 268
BbvI	GCAGC	2 cut(s)	69, 241
BccI	CCATC	1 cut(s)	746
BcgI	CGANNNNNNTGC	6 cut(s)	53, 87, 693, 703, 727, 737
BciT130I	CCWGG	2 cut(s)	212, 647
BcnI	CCSGG	1 cut(s)	30
BfaI	CTAG	3 cut(s)	6, 276, 407
BisI	GCNGC	2 cut(s)	58, 255
BlsI	GCNGC	2 cut(s)	59, 256
Bme1390I	CCNGG	3 cut(s)	30, 212, 647
Bme18I	GGWCC	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	234
BmgT120I	GGNCC	2 cut(s)	133, 576
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	3 cut(s)	30, 212, 647
BmsI	GCATC	1 cut(s)	525
BmtI	GCTAGC	1 cut(s)	410
BpiI	GAAGAC	3 cut(s)	21, 30, 268
BpmI	CTGGAG	1 cut(s)	621
Bpu14I	TTCGAA	1 cut(s)	732
BpuMI	CCSGG	1 cut(s)	30
BsaJI	CCNNGG	3 cut(s)	28, 63, 582
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 36
Bse1I	ACTGG	3 cut(s)	547, 604, 639
BseBI	CCWGG	2 cut(s)	212, 647
BseDI	CCNNGG	3 cut(s)	28, 63, 582
BseLI	CCNNNNNNNGG	2 cut(s)	35, 36
BseNI	ACTGG	3 cut(s)	547, 604, 639
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	69, 241
BseYI	CCCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	2 cut(s)	578, 693
BsiHKCI	CYCGRG	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	35, 36
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	578, 693
BsoBI	CYCGRG	1 cut(s)	234
Bsp119I	TTCGAA	1 cut(s)	732
Bsp143I	GATC	1 cut(s)	625
BspACI	CCGC	2 cut(s)	183, 227
BspANI	GGCC	2 cut(s)	578, 693
BspLI	GGNNCC	1 cut(s)	216
BspOI	GCTAGC	1 cut(s)	410
BspQI	GCTCTTC	1 cut(s)	137
BspT104I	TTCGAA	1 cut(s)	732
BsrI	ACTGG	3 cut(s)	547, 604, 639
BssECI	CCNNGG	3 cut(s)	28, 63, 582
BssMI	GATC	1 cut(s)	625
BssT1I	CCWWGG	1 cut(s)	582
Bst2UI	CCWGG	2 cut(s)	212, 647
Bst4CI	ACNGT	2 cut(s)	20, 497
Bst6I	CTCTTC	2 cut(s)	137, 301
BstBI	TTCGAA	1 cut(s)	732
BstC8I	GCNNGC	4 cut(s)	231, 408, 412, 440
BstKTI	GATC	1 cut(s)	628
BstMBI	GATC	1 cut(s)	625
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 239
BstNI	CCWGG	2 cut(s)	212, 647
BstSCI	CCNGG	3 cut(s)	28, 210, 645
BstV1I	GCAGC	2 cut(s)	69, 241
BstV2I	GAAGAC	3 cut(s)	21, 30, 268
BsuRI	GGCC	2 cut(s)	578, 693
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	2 cut(s)	421, 597
Cac8I	GCNNGC	4 cut(s)	231, 408, 412, 440
Cfr13I	GGNCC	2 cut(s)	133, 576
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	6 cut(s)	139, 448, 478, 538, 590, 677
CviQI	GTAC	1 cut(s)	553
DpnI	GATC	1 cut(s)	627
DpnII	GATC	1 cut(s)	625
DraI	TTTAAA	1 cut(s)	93
DraIII	CACNNNGTG	1 cut(s)	416
Eam1104I	CTCTTC	2 cut(s)	137, 301
EarI	CTCTTC	2 cut(s)	137, 301
Eco130I	CCWWGG	1 cut(s)	582
Eco147I	AGGCCT	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	210, 645
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	6 cut(s)	142, 451, 481, 541, 593, 680
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	6 cut(s)	138, 447, 477, 537, 589, 676
FauI	CCCGC	1 cut(s)	234
FblI	GTMKAC	1 cut(s)	681
Fnu4HI	GCNGC	2 cut(s)	58, 255
Fsp4HI	GCNGC	2 cut(s)	58, 255
FspBI	CTAG	3 cut(s)	6, 276, 407
GluI	GCNGC	2 cut(s)	58, 255
GsaI	CCCAGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	2 cut(s)	578, 693
HapII	CCGG	1 cut(s)	30
Hin1II	CATG	6 cut(s)	142, 451, 481, 541, 593, 680
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HindIII	AAGCTT	1 cut(s)	268
HinfI	GANTC	2 cut(s)	109, 207
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	2 cut(s)	168, 509
Hpy166II	GTNNAC	1 cut(s)	682
Hpy188I	TCNGA	1 cut(s)	632
Hpy188III	TCNNGA	8 cut(s)	11, 106, 113, 159, 338, 568, 714, 742
Hpy8I	GTNNAC	1 cut(s)	682
HpyAV	CCTTC	2 cut(s)	506, 711
HpyCH4III	ACNGT	2 cut(s)	20, 497
HpyCH4V	TGCA	5 cut(s)	257, 286, 384, 438, 704
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 239
Hsp92II	CATG	6 cut(s)	142, 451, 481, 541, 593, 680
Kzo9I	GATC	1 cut(s)	625
LguI	GCTCTTC	1 cut(s)	137
Lsp1109I	GCAGC	2 cut(s)	69, 241
LweI	GCATC	1 cut(s)	525
MaeI	CTAG	3 cut(s)	6, 276, 407
MaeIII	GTNAC	3 cut(s)	174, 523, 655
MalI	GATC	1 cut(s)	627
MboI	GATC	1 cut(s)	625
MboII	GAAGA	8 cut(s)	26, 35, 71, 74, 154, 273, 318, 470
MluCI	AATT	5 cut(s)	127, 150, 162, 287, 766
MnlI	CCTC	8 cut(s)	58, 61, 302, 345, 596, 605, 683, 704
MroXI	GAANNNNTTC	1 cut(s)	614
MseI	TTAA	6 cut(s)	92, 165, 170, 371, 507, 775
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	3 cut(s)	30, 212, 647
MvaI	CCWGG	2 cut(s)	212, 647
MwoI	GCNNNNNNNGC	2 cut(s)	230, 239
NciI	CCSGG	1 cut(s)	30
NdeII	GATC	1 cut(s)	625
NheI	GCTAGC	1 cut(s)	406
NlaIII	CATG	6 cut(s)	142, 451, 481, 541, 593, 680
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	3 cut(s)	174, 523, 655
NspV	TTCGAA	1 cut(s)	732
PceI	AGGCCT	1 cut(s)	693
PciSI	GCTCTTC	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	614
PfeI	GAWTC	2 cut(s)	109, 207
PfoI	TCCNGGA	1 cut(s)	210
PkrI	GCNGC	2 cut(s)	59, 256
Psp6I	CCWGG	2 cut(s)	210, 645
PspFI	CCCAGC	1 cut(s)	179
PspGI	CCWGG	2 cut(s)	210, 645
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	2 cut(s)	133, 576
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
RseI	CAYNNNNRTG	1 cut(s)	521
SalI	GTCGAC	1 cut(s)	680
SapI	GCTCTTC	1 cut(s)	137
SaqAI	TTAA	6 cut(s)	92, 165, 170, 371, 507, 775
SatI	GCNGC	2 cut(s)	58, 255
Sau3AI	GATC	1 cut(s)	625
Sau96I	GGNCC	2 cut(s)	133, 576
ScrFI	CCNGG	3 cut(s)	30, 212, 647
SetI	ASST	9 cut(s)	220, 272, 277, 313, 408, 507, 588, 662, 722
SfaNI	GCATC	1 cut(s)	525
SfuI	TTCGAA	1 cut(s)	732
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	521
Sse9I	AATT	5 cut(s)	127, 150, 162, 287, 766
SseBI	AGGCCT	1 cut(s)	693
SsiI	CCGC	2 cut(s)	183, 227
SspMI	CTAG	3 cut(s)	6, 276, 407
StuI	AGGCCT	1 cut(s)	693
StyD4I	CCNGG	3 cut(s)	28, 210, 645
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	2 cut(s)	20, 497
TaqI	TCGA	5 cut(s)	10, 465, 681, 713, 732
TaqII	GACCGA	1 cut(s)	769
TasI	AATT	5 cut(s)	127, 150, 162, 287, 766
TfiI	GAWTC	2 cut(s)	109, 207
Tru1I	TTAA	6 cut(s)	92, 165, 170, 371, 507, 775
Tru9I	TTAA	6 cut(s)	92, 165, 170, 371, 507, 775
TscAI	CASTG	2 cut(s)	421, 604
TseFI	GTSAC	3 cut(s)	174, 523, 655
TseI	GCWGC	2 cut(s)	57, 254
Tsp45I	GTSAC	3 cut(s)	174, 523, 655
TspDTI	ATGAA	4 cut(s)	155, 464, 525, 578
TspGWI	ACGGA	2 cut(s)	57, 336
TspRI	CASTG	2 cut(s)	421, 604
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	2 cut(s)	127, 150
XmiI	GTMKAC	1 cut(s)	681
XmnI	GAANNNNTTC	1 cut(s)	614
XspI	CTAG	3 cut(s)	6, 276, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.