Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8184858.1

Orthogroup ID

OG0002989

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 684

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8184858.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

gagatacagaaattggaggacacgaagcgcaagtctgttggccatattagggtatacccgaatcccgaaaccaaaccaagggcactgcaaatcgaaaaacaagaggaagacactgtcaatgttgcacaaggcttgtccagaaagcagcaactacaacaaggtcctatgcggaaagcggtgcacactgaagaacaagaagctatgaatggagcaaaaccacagcaaggtttgttctatggagactatacccctcctaatctcccaccagtcccaagcctacacaaattgatcgaaatttgcagcgagccttttgagaagcaattgacatgtagtgatgtgagggatgaccagtcaaggctagctatgagcaaagaagatgtgcaaaagcatctaatgccattgttgaatgagagtgaagatcttaacgaaggaattgacgtgacgacttataatttggctggtaaggagtaccccatgaagttcaaaacttgggtgtccaagattcatgtcttaactggaggatggaaagctttctgccgtgatcatcaattggttcagacacaacattttgtcacagtgtggatgtttcggaatattgcaacccgcaatctttgcttcgtaatcgaggtgagaaggttgccggtgtttgaaaccatcaagagaagaagaatacggcagaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

227

Amino Acids

26.44

Weight (kDa)

8.99

Isoelectric Point (pI)

66.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20600 AT4G03160 AT4G03170
fragaria_vesca	FvH4_1g16231 FvH4_1g24261 FvH4_5g06160
malus_domestica	MD00G1107900.v1.1 MD02G1059300.v1.1 MD02G1060300.v1.1 MD15G1316300.v1.1
prunus_persica	Prupe.7G223800_v2.0.a1 Prupe.7G223900_v2.0.a1 Prupe.7G224000_v2.0.a1 Prupe.7G224100_v2.0.a1
pyrus_communis	pycom15g22210
rosa_chinensis	RchiOBHm_Chr2g0120751 RchiOBHm_Chr7g0192641
rosa_laevigata	RLG00000004339 RLG00000004342 RLG00000018577
rosa_multiflora	Rmu_co8184858.1_g000001 Rmu_sc0000319.1_g000009 Rmu_sc0002040.1_g000002 Rmu_sc0035522.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123120 Rroxscaffold_3G00262810
rosa_rugosa	Rorug02G0230700 Rorug07G0003400
rosa_samantha	Rh2AG287400 Rh2BG298900 Rh2CG276800 Rh2DG312700 Rh7AG128400 Rh7BG130000 Rh7CG133300 Rh7DG131000
rosa_wichuraiana	Rw2G023050 Rw7G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	3 cut(s)	169, 176, 604
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	207
AdeI	CACNNNGTG	1 cut(s)	579
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	3 cut(s)	49, 78, 224
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	406, 484, 650
AjiI	CACGTC	1 cut(s)	439
AluBI	AGCT	3 cut(s)	200, 362, 530
AluI	AGCT	3 cut(s)	200, 362, 530
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	234
Alw44I	GTGCAC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	40
ApaLI	GTGCAC	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	145, 300
ApoI	RAATTY	1 cut(s)	294
ArsI	GACNNNNNNTTYG	4 cut(s)	17, 49, 436, 468
Asp700I	GAANNNNTTC	1 cut(s)	530
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	640
AsuNHI	GCTAGC	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	161
BaeGI	GKGCMC	2 cut(s)	85, 183
BalI	TGGCCA	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	157, 312
BccI	CCATC	2 cut(s)	516, 662
BceAI	ACGGC	1 cut(s)	522
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	359
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	2 cut(s)	146, 301
BlsI	GCNGC	2 cut(s)	147, 302
Bme18I	GGWCC	1 cut(s)	161
BmgBI	CACGTC	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	161
BmsI	GCATC	1 cut(s)	397
BmtI	GCTAGC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	537
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 78, 224
Bse118I	RCCGGY	1 cut(s)	640
Bse1I	ACTGG	3 cut(s)	266, 349, 520
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	3 cut(s)	349, 527, 588
BseLI	CCNNNNNNNGG	3 cut(s)	49, 78, 224
BseNI	ACTGG	3 cut(s)	266, 349, 520
BseSI	GKGCMC	2 cut(s)	85, 183
BseXI	GCAGC	2 cut(s)	157, 312
BshFI	GGCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	641
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	3 cut(s)	49, 78, 224
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	42
Bsp1286I	GDGCHC	2 cut(s)	85, 183
Bsp143I	GATC	3 cut(s)	288, 418, 541
BspACI	CCGC	3 cut(s)	169, 176, 604
BspANI	GGCC	1 cut(s)	42
BspOI	GCTAGC	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	640
BsrI	ACTGG	3 cut(s)	266, 349, 520
BssAI	RCCGGY	1 cut(s)	640
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	3 cut(s)	288, 418, 541
BssNAI	GTATAC	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	77
Bst1107I	GTATAC	1 cut(s)	55
Bst4CI	ACNGT	2 cut(s)	115, 577
BstAPI	GCANNNNNTGC	2 cut(s)	394, 612
BstC8I	GCNNGC	2 cut(s)	305, 360
BstF5I	GGATG	3 cut(s)	349, 527, 588
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	3 cut(s)	291, 421, 544
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	3 cut(s)	288, 418, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	394, 612
BstNSI	RCATGY	1 cut(s)	330
BstSLI	GKGCMC	2 cut(s)	85, 183
BstV1I	GCAGC	2 cut(s)	157, 312
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BstZ17I	GTATAC	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	42
BtrI	CACGTC	1 cut(s)	439
BtsCI	GGATG	3 cut(s)	349, 527, 588
BtsI	GCAGTG	1 cut(s)	83
BtsIMutI	CAGTG	4 cut(s)	83, 111, 183, 582
Cac8I	GCNNGC	2 cut(s)	305, 360
CfoI	GCGC	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	640
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	3 cut(s)	327, 475, 506
CviJI	RGCY	9 cut(s)	42, 132, 200, 276, 307, 358, 362, 458, 530
CviKI_1	RGCY	9 cut(s)	42, 132, 200, 276, 307, 358, 362, 458, 530
CviQI	GTAC	1 cut(s)	469
DpnI	GATC	3 cut(s)	290, 420, 543
DpnII	GATC	3 cut(s)	288, 418, 541
DraIII	CACNNNGTG	1 cut(s)	579
EaeI	YGGCCR	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	3 cut(s)	330, 478, 509
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	3 cut(s)	326, 474, 505
FauI	CCCGC	1 cut(s)	611
FbaI	TGATCA	1 cut(s)	541
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	146, 301
FokI	GGATG	3 cut(s)	356, 534, 595
Fsp4HI	GCNGC	2 cut(s)	146, 301
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	2 cut(s)	146, 301
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	1 cut(s)	641
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	3 cut(s)	330, 478, 509
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	528
HinfI	GANTC	2 cut(s)	61, 502
HpaII	CCGG	1 cut(s)	641
HphI	GGTGA	1 cut(s)	640
Hpy166II	GTNNAC	2 cut(s)	55, 181
Hpy188I	TCNGA	2 cut(s)	558, 591
Hpy188III	TCNNGA	3 cut(s)	65, 138, 658
Hpy8I	GTNNAC	2 cut(s)	55, 181
HpyAV	CCTTC	2 cut(s)	422, 627
HpyCH4III	ACNGT	2 cut(s)	115, 577
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	6 cut(s)	88, 125, 181, 300, 382, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	394, 612
HpySE526I	ACGT	1 cut(s)	438
Hsp92II	CATG	3 cut(s)	330, 478, 509
HspAI	GCGC	1 cut(s)	28
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	3 cut(s)	288, 418, 541
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	6 cut(s)	151, 279, 362, 444, 501, 654
Lsp1109I	GCAGC	2 cut(s)	157, 312
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	438
MaeIII	GTNAC	2 cut(s)	439, 571
MalI	GATC	3 cut(s)	290, 420, 543
MboI	GATC	3 cut(s)	288, 418, 541
MboII	GAAGA	6 cut(s)	119, 200, 386, 428, 675, 678
MfeI	CAATTG	2 cut(s)	320, 548
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	2 cut(s)	85, 183
MlsI	TGGCCA	1 cut(s)	42
MluCI	AATT	8 cut(s)	11, 284, 294, 320, 432, 451, 548, 679
MluNI	TGGCCA	1 cut(s)	42
MnlI	CCTC	6 cut(s)	10, 97, 261, 333, 512, 619
Mox20I	TGGCCA	1 cut(s)	42
MroXI	GAANNNNTTC	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	42
MseI	TTAA	2 cut(s)	423, 512
Msp20I	TGGCCA	1 cut(s)	42
MspI	CCGG	1 cut(s)	641
MunI	CAATTG	2 cut(s)	320, 548
MwoI	GCNNNNNNNGC	2 cut(s)	394, 612
NdeII	GATC	3 cut(s)	288, 418, 541
NheI	GCTAGC	1 cut(s)	358
NlaIII	CATG	3 cut(s)	330, 478, 509
NmuCI	GTSAC	2 cut(s)	439, 571
NspI	RCATGY	1 cut(s)	330
PciI	ACATGT	1 cut(s)	326
PdmI	GAANNNNTTC	1 cut(s)	530
PfeI	GAWTC	2 cut(s)	61, 502
PflFI	GACNNNGTC	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	147, 302
PpuMI	RGGWCCY	1 cut(s)	161
PscI	ACATGT	1 cut(s)	326
PsiI	TTATAA	1 cut(s)	450
Psp5II	RGGWCCY	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	161
PspPPI	RGGWCCY	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SaqAI	TTAA	2 cut(s)	423, 512
SatI	GCNGC	2 cut(s)	146, 301
Sau3AI	GATC	3 cut(s)	288, 418, 541
Sau96I	GGNCC	1 cut(s)	161
SduI	GDGCHC	2 cut(s)	85, 183
SetI	ASST	8 cut(s)	163, 202, 229, 364, 441, 532, 630, 638
SfaNI	GCATC	1 cut(s)	397
SinI	GGWCC	1 cut(s)	161
Sse9I	AATT	8 cut(s)	11, 284, 294, 320, 432, 451, 548, 679
SsiI	CCGC	3 cut(s)	169, 176, 604
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	115, 577
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	3 cut(s)	93, 291, 624
TasI	AATT	8 cut(s)	11, 284, 294, 320, 432, 451, 548, 679
TfiI	GAWTC	2 cut(s)	61, 502
Tru1I	TTAA	2 cut(s)	423, 512
Tru9I	TTAA	2 cut(s)	423, 512
TscAI	CASTG	4 cut(s)	90, 118, 190, 582
TseFI	GTSAC	2 cut(s)	439, 571
TseI	GCWGC	2 cut(s)	145, 300
Tsp45I	GTSAC	2 cut(s)	439, 571
TspDTI	ATGAA	3 cut(s)	218, 491, 494
TspRI	CASTG	4 cut(s)	90, 118, 190, 582
Tth111I	GACNNNGTC	1 cut(s)	113
VneI	GTGCAC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	1 cut(s)	294
XceI	RCATGY	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	530
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.