Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002989

Physical Location & Seq

Genomic Coordinates Forward (+)

4844033 .. 4844392

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1060300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGACAGAGACGGACGTGAACCACCTCTACCAGAGGCTCATCCTCTATAAAAATGATGTGAAAAGATACCTCTCGCCATTGCTCATTGAGAAGGAGAGCCTTGAGGAAGGAGTTAACGTCACAGTTTACGACACCAACGGTGTAGATTACGAGATGGAGTTGGGCACTTGGAACAGTGGTACTCGTGTTCTTGCTGGGGAAGGATGGAAAAACTTTCGCAAGGCTCATGGTCTGATGGCGTACCGGGATTTTTTAACCCTTTGGATGTTTCGAAATGCCGATACGACTAAGCTTTGCATGTTCATCAGTTGCAGAAGGTTGCCAGTGGTTCAGACCATCAAAAGACAGGGAAGACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005737 GO:0005819 GO:0005856 GO:0007275 GO:0007346 GO:0008150 GO:0009504 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010071 GO:0010154 GO:0015630 GO:0022414 GO:0022622 GO:0030154 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048829 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0061458 GO:0065007 GO:0090421 GO:0099402 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

120

Amino Acids

14.03

Weight (kDa)

9.2

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	10 - 99	8.8e-09	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20600 AT4G03160 AT4G03170
fragaria_vesca	FvH4_1g16231 FvH4_1g24261 FvH4_5g06160
malus_domestica	MD00G1107900.v1.1 MD02G1059300.v1.1 MD02G1060300.v1.1 MD15G1316300.v1.1
prunus_persica	Prupe.7G223800_v2.0.a1 Prupe.7G223900_v2.0.a1 Prupe.7G224000_v2.0.a1 Prupe.7G224100_v2.0.a1
pyrus_communis	pycom15g22210
rosa_chinensis	RchiOBHm_Chr2g0120751 RchiOBHm_Chr7g0192641
rosa_laevigata	RLG00000004339 RLG00000004342 RLG00000018577
rosa_multiflora	Rmu_co8184858.1_g000001 Rmu_sc0000319.1_g000009 Rmu_sc0002040.1_g000002 Rmu_sc0035522.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123120 Rroxscaffold_3G00262810
rosa_rugosa	Rorug02G0230700 Rorug07G0003400
rosa_samantha	Rh2AG287400 Rh2BG298900 Rh2CG276800 Rh2DG312700 Rh7AG128400 Rh7BG130000 Rh7CG133300 Rh7DG131000
rosa_wichuraiana	Rw2G023050 Rw7G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	181, 242
AjiI	CACGTC	1 cut(s)	16
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	2
AsuC2I	CCSGG	1 cut(s)	245
AsuII	TTCGAA	1 cut(s)	271
BaeGI	GKGCMC	1 cut(s)	167
BaeI	ACNNNNGTAYC	2 cut(s)	171, 204
BauI	CACGAG	1 cut(s)	183
BccI	CCATC	4 cut(s)	148, 198, 229, 344
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	2
Bme1390I	CCNGG	1 cut(s)	245
BmgBI	CACGTC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	245
Bpu14I	TTCGAA	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	77
BseGI	GGATG	3 cut(s)	39, 209, 270
BseMI	GCAATG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	323
BseSI	GKGCMC	1 cut(s)	167
BseYI	CCCAGC	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	2
BsmBI	CGTCTC	1 cut(s)	2
Bsp119I	TTCGAA	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	323
BssSI	CACGAG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	183
Bst4CI	ACNGT	4 cut(s)	124, 140, 176, 357
BstBI	TTCGAA	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	3 cut(s)	39, 209, 270
BstMAI	GTCTC	1 cut(s)	2
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	167
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	3 cut(s)	39, 209, 270
BtsIMutI	CAGTG	2 cut(s)	181, 330
Csp6I	GTAC	2 cut(s)	180, 241
CviAII	CATG	2 cut(s)	227, 298
CviJI	RGCY	4 cut(s)	37, 99, 224, 292
CviKI_1	RGCY	4 cut(s)	37, 99, 224, 292
CviQI	GTAC	2 cut(s)	180, 241
DdeI	CTNAG	1 cut(s)	288
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	2 cut(s)	230, 301
FaiI	YATR	3 cut(s)	48, 228, 299
FatI	CATG	2 cut(s)	226, 297
FokI	GGATG	3 cut(s)	26, 216, 277
GsaI	CCCAGC	1 cut(s)	198
HapII	CCGG	1 cut(s)	244
Hin1II	CATG	2 cut(s)	230, 301
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	290
HpaI	GTTAAC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	244
Hpy166II	GTNNAC	3 cut(s)	19, 115, 127
Hpy188I	TCNGA	2 cut(s)	234, 333
Hpy8I	GTNNAC	3 cut(s)	19, 115, 127
HpyAV	CCTTC	4 cut(s)	85, 101, 194, 309
HpyCH4III	ACNGT	4 cut(s)	124, 140, 176, 357
HpyCH4IV	ACGT	2 cut(s)	15, 117
HpyCH4V	TGCA	2 cut(s)	297, 312
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	2 cut(s)	15, 117
Hsp92II	CATG	2 cut(s)	230, 301
KspAI	GTTAAC	1 cut(s)	115
LpnPI	CCDG	5 cut(s)	44, 180, 257, 332, 336
MaeII	ACGT	2 cut(s)	15, 117
MaeIII	GTNAC	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	167
MnlI	CCTC	5 cut(s)	27, 35, 53, 80, 97
MseI	TTAA	2 cut(s)	114, 254
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	245
NciI	CCSGG	1 cut(s)	245
NlaIII	CATG	2 cut(s)	230, 301
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	1 cut(s)	301
NspV	TTCGAA	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	194
PsrI	GAACNNNNNNTAC	2 cut(s)	11, 43
RsaI	GTAC	2 cut(s)	181, 242
RsaNI	GTAC	2 cut(s)	180, 241
SaqAI	TTAA	2 cut(s)	114, 254
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	6 cut(s)	18, 27, 72, 120, 294, 320
SfuI	TTCGAA	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	4 cut(s)	124, 140, 176, 357
TaiI	ACGT	2 cut(s)	18, 120
TaqI	TCGA	1 cut(s)	271
Tru1I	TTAA	2 cut(s)	114, 254
Tru9I	TTAA	2 cut(s)	114, 254
TscAI	CASTG	2 cut(s)	181, 330
TseFI	GTSAC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	292
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	2 cut(s)	181, 330
XceI	RCATGY	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.