Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002989

Physical Location & Seq

Genomic Coordinates Forward (+)

19924570 .. 19925758

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G223800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGACTAGTCAAGAAGACCGTGAAGAGCCCGGTTGTGCAGACGGAGAGATGACGAACGGGACTGAGGGTGCTTATCTTCTTCTATTTTTAAAGCATACAATCTTGAATCCCGAAACAGCGAGAGATTTGGAGCACATGAAGCGCAAAATTCTTTCTGGAATTGAGTTAAACTCACCCAGCAGAAGTAAGCGAAAAGCACTACGAATCCAAGAACCTGAAGCCCCGCGAGCCCGAGAATCCACTAATGGTGCTGCACGAGGACGAAGCTCACCTAGAGAACTGCAATTTCAACAACAAGAAAGAGGAGGTTTGTTCTATGGAAACTATGCCCCTCCTGATTTGCCACCAATTCCAAGCCTACAAAACTTAATCCAAGATTGCAGTAAGCCTTTTGAGAAACAGCTCACACGCAGTGATGTGAAAGAAGACCAATGCAGGCTCTCCATGAACAAAGAAGATGTCGAATATAACATCATGCCATTGTTGAGAAACGGTGACAACTTTAATGAAGGCATCGATGTGACAACTTATGACATGGCTGGCACCGAGTACCCAATGGTGTTCAAGATTTGGGCCACCAAGATTCATGTCCTCACTGGAGGCTGGAAAACTTTCTGTAATGATCTCGGACTGGTTGAGAACCAGGATTTTGTGACCTTGTGGGTTTTTCGCCATGTCGACAATGGAGGCCTCTGCTTCGCAATCCATTCAAGAAGGTTGCCGGTGTTCAAACCCATCAAGAAAAGAAGACCGATAAGGCAGAAATACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

258

Amino Acids

29.51

Weight (kDa)

8.54

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20600 AT4G03160 AT4G03170
fragaria_vesca	FvH4_1g16231 FvH4_1g24261 FvH4_5g06160
malus_domestica	MD00G1107900.v1.1 MD02G1059300.v1.1 MD02G1060300.v1.1 MD15G1316300.v1.1
prunus_persica	Prupe.7G223800_v2.0.a1 Prupe.7G223900_v2.0.a1 Prupe.7G224000_v2.0.a1 Prupe.7G224100_v2.0.a1
pyrus_communis	pycom15g22210
rosa_chinensis	RchiOBHm_Chr2g0120751 RchiOBHm_Chr7g0192641
rosa_laevigata	RLG00000004339 RLG00000004342 RLG00000018577
rosa_multiflora	Rmu_co8184858.1_g000001 Rmu_sc0000319.1_g000009 Rmu_sc0002040.1_g000002 Rmu_sc0035522.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123120 Rroxscaffold_3G00262810
rosa_rugosa	Rorug02G0230700 Rorug07G0003400
rosa_samantha	Rh2AG287400 Rh2BG298900 Rh2CG276800 Rh2DG312700 Rh7AG128400 Rh7BG130000 Rh7CG133300 Rh7DG131000
rosa_wichuraiana	Rw2G023050 Rw7G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	542
AccI	GTMKAC	1 cut(s)	678
AccII	CGCG	1 cut(s)	226
AciI	CCGC	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	237
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	1 cut(s)	551
AgsI	TTSAA	5 cut(s)	106, 290, 565, 711, 730
AhlI	ACTAGT	1 cut(s)	5
AjnI	CCWGG	1 cut(s)	642
AluBI	AGCT	2 cut(s)	267, 403
AluI	AGCT	2 cut(s)	267, 403
Alw21I	GWGCWC	1 cut(s)	135
Ama87I	CYCGRG	1 cut(s)	231
AoxI	GGCC	2 cut(s)	573, 688
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	147
ArsI	GACNNNNNNTTYG	2 cut(s)	444, 476
Asp700I	GAANNNNTTC	1 cut(s)	611
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	573
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	3 cut(s)	165, 261, 506
AvaI	CYCGRG	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	542
BanII	GRGCYC	2 cut(s)	30, 232
BauI	CACGAG	1 cut(s)	255
BbsI	GAAGAC	3 cut(s)	21, 432, 754
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	1 cut(s)	743
BciT130I	CCWGG	1 cut(s)	644
BcnI	CCSGG	1 cut(s)	30
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	2 cut(s)	6, 273
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	2 cut(s)	30, 644
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	573
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	2 cut(s)	30, 644
BmsI	GCATC	1 cut(s)	522
BpiI	GAAGAC	3 cut(s)	21, 432, 754
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpmI	CTGGAG	1 cut(s)	618
BpuMI	CCSGG	1 cut(s)	30
Bsa29I	ATCGAT	1 cut(s)	516
Bse118I	RCCGGY	1 cut(s)	721
Bse1I	ACTGG	2 cut(s)	601, 636
BseBI	CCWGG	1 cut(s)	644
BseCI	ATCGAT	1 cut(s)	516
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	601, 636
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	238
BseYI	CCCAGC	1 cut(s)	176
BsgI	GTGCAG	2 cut(s)	57, 237
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	2 cut(s)	575, 690
BshNI	GGYRCC	1 cut(s)	542
BshVI	ATCGAT	1 cut(s)	516
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	30, 722
BslFI	GGGAC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	575, 690
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	3 cut(s)	30, 135, 232
Bsp143I	GATC	1 cut(s)	622
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	2 cut(s)	575, 690
BspCNI	CTCAG	1 cut(s)	55
BspDI	ATCGAT	1 cut(s)	516
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	544
BspQI	GCTCTTC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	542
BsrFI	RCCGGY	1 cut(s)	721
BsrI	ACTGG	2 cut(s)	601, 636
BssAI	RCCGGY	1 cut(s)	721
BssMI	GATC	1 cut(s)	622
BssSI	CACGAG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	644
Bst4CI	ACNGT	2 cut(s)	20, 494
Bst6I	CTCTTC	1 cut(s)	18
BstC8I	GCNNGC	3 cut(s)	228, 437, 541
BstDEI	CTNAG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	1 cut(s)	625
BstMBI	GATC	1 cut(s)	622
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 227
BstNI	CCWGG	1 cut(s)	644
BstSCI	CCNGG	2 cut(s)	28, 642
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	3 cut(s)	21, 432, 754
Bsu15I	ATCGAT	1 cut(s)	516
BsuRI	GGCC	2 cut(s)	575, 690
BsuTUI	ATCGAT	1 cut(s)	516
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	418, 594
Cac8I	GCNNGC	3 cut(s)	228, 437, 541
CfoI	GCGC	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	721
Cfr13I	GGNCC	1 cut(s)	573
ClaI	ATCGAT	1 cut(s)	516
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	6 cut(s)	136, 445, 475, 535, 587, 674
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	624
DpnII	GATC	1 cut(s)	622
DraI	TTTAAA	1 cut(s)	90
DraIII	CACNNNGTG	1 cut(s)	413
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco147I	AGGCCT	1 cut(s)	690
Eco24I	GRGCYC	2 cut(s)	30, 232
Eco57I	CTGAAG	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	642
EcoT38I	GRGCYC	2 cut(s)	30, 232
FaeI	CATG	6 cut(s)	139, 448, 478, 538, 590, 677
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	6 cut(s)	135, 444, 474, 534, 586, 673
FauI	CCCGC	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	1 cut(s)	252
FriOI	GRGCYC	2 cut(s)	30, 232
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	2 cut(s)	6, 273
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	1 cut(s)	252
GsaI	CCCAGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	2 cut(s)	575, 690
HapII	CCGG	2 cut(s)	30, 722
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	6 cut(s)	139, 448, 478, 538, 590, 677
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	4 cut(s)	106, 204, 236, 583
HpaII	CCGG	2 cut(s)	30, 722
HphI	GGTGA	3 cut(s)	165, 261, 506
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	1 cut(s)	629
Hpy188III	TCNNGA	8 cut(s)	11, 103, 110, 156, 335, 565, 711, 739
Hpy8I	GTNNAC	1 cut(s)	679
HpyAV	CCTTC	2 cut(s)	503, 708
HpyCH4III	ACNGT	2 cut(s)	20, 494
HpyCH4V	TGCA	5 cut(s)	38, 254, 283, 381, 435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 227
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	6 cut(s)	139, 448, 478, 538, 590, 677
HspAI	GCGC	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	622
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	1 cut(s)	522
MaeI	CTAG	2 cut(s)	6, 273
MaeIII	GTNAC	3 cut(s)	494, 520, 652
MalI	GATC	1 cut(s)	624
MboI	GATC	1 cut(s)	622
MboII	GAAGA	7 cut(s)	26, 35, 68, 71, 437, 467, 759
MhlI	GDGCHC	3 cut(s)	30, 135, 232
MluCI	AATT	4 cut(s)	147, 159, 284, 348
MnlI	CCTC	9 cut(s)	58, 251, 296, 299, 342, 593, 602, 680, 701
MroXI	GAANNNNTTC	1 cut(s)	611
MseI	TTAA	5 cut(s)	89, 167, 368, 504, 772
MslI	CAYNNNNRTG	1 cut(s)	518
MspI	CCGG	2 cut(s)	30, 722
MspR9I	CCNGG	2 cut(s)	30, 644
MvaI	CCWGG	1 cut(s)	644
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	139, 227
NciI	CCSGG	1 cut(s)	30
NdeII	GATC	1 cut(s)	622
NlaIII	CATG	6 cut(s)	139, 448, 478, 538, 590, 677
NlaIV	GGNNCC	1 cut(s)	544
NmuCI	GTSAC	3 cut(s)	494, 520, 652
PceI	AGGCCT	1 cut(s)	690
PciSI	GCTCTTC	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	611
PfeI	GAWTC	4 cut(s)	106, 204, 236, 583
PkrI	GCNGC	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	642
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	642
PspN4I	GGNNCC	1 cut(s)	544
PspPI	GGNCC	1 cut(s)	573
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	1 cut(s)	518
SalI	GTCGAC	1 cut(s)	677
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	5 cut(s)	89, 167, 368, 504, 772
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	1 cut(s)	622
Sau96I	GGNCC	1 cut(s)	573
ScrFI	CCNGG	2 cut(s)	30, 644
SduI	GDGCHC	3 cut(s)	30, 135, 232
SetI	ASST	7 cut(s)	217, 269, 274, 310, 405, 659, 719
SfaNI	GCATC	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	518
SpeI	ACTAGT	1 cut(s)	5
Sse9I	AATT	4 cut(s)	147, 159, 284, 348
SseBI	AGGCCT	1 cut(s)	690
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	2 cut(s)	6, 273
StuI	AGGCCT	1 cut(s)	690
StyD4I	CCNGG	2 cut(s)	28, 642
TaaI	ACNGT	2 cut(s)	20, 494
TaqI	TCGA	3 cut(s)	462, 516, 678
TaqII	GACCGA	1 cut(s)	766
TasI	AATT	4 cut(s)	147, 159, 284, 348
TfiI	GAWTC	4 cut(s)	106, 204, 236, 583
Tru1I	TTAA	5 cut(s)	89, 167, 368, 504, 772
Tru9I	TTAA	5 cut(s)	89, 167, 368, 504, 772
TscAI	CASTG	2 cut(s)	418, 601
TseFI	GTSAC	3 cut(s)	494, 520, 652
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	3 cut(s)	494, 520, 652
TspDTI	ATGAA	4 cut(s)	152, 461, 522, 575
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	2 cut(s)	418, 601
XapI	RAATTY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	678
XmnI	GAANNNNTTC	1 cut(s)	611
XspI	CTAG	2 cut(s)	6, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.