Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002040.1

Orthogroup ID

OG0002989

Physical Location & Seq

Genomic Coordinates Reverse (-)

3315 .. 4100

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002040.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atggctaggctgaccaatgaagaagacgatgatatgatgaaggccgtttttaatctttgtcatatgaagcatgtgcttgttgattctacaaaagacatacagatattggaggatactaaccgcaagtgtcttagtcaaattagtgctaaagacaaacgaaaaacattattaatcaaagaacaaggaggtgaatgcattgttaatgttgcccaaggcttgcatagaaaccaacgactacaacaggatcctaagagaaaagctttgcaagtcacaggacaagaagccatttatgctggacaaggcttagcaaactcaaacgtatgtcaaggtttgttctatggaaactatgcccctcctaatctcccaccagtcccacgcctacgacaatttattgaaatttgcagtcagccgtttgagaagcaattaacatttagtgatgtgaaggatgaccaatcaaggctagctatgagcaaagaggatgtccaaaagcgcctaatgccattgttgaatgagaatgaagatcttagacgaggaatccaagtcacaacttatgacttggatggtaaagagtatcccatggtgttcaaaatttgggtggaaaagattcatgtcttgaccggaggatggaaagctttttgccatgatcataagatggttgagaagcaagattttgtgaccgtatggatgtttcgaaatgctgcaaccggtagcctttgctttgtaattgattcgagaaggctgccagtgcttgaaaccatcaagagaagaagaacaaggcgaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

261

Amino Acids

30.21

Weight (kDa)

9.12

Isoelectric Point (pI)

65.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20600 AT4G03160 AT4G03170
fragaria_vesca	FvH4_1g16231 FvH4_1g24261 FvH4_5g06160
malus_domestica	MD00G1107900.v1.1 MD02G1059300.v1.1 MD02G1060300.v1.1 MD15G1316300.v1.1
prunus_persica	Prupe.7G223800_v2.0.a1 Prupe.7G223900_v2.0.a1 Prupe.7G224000_v2.0.a1 Prupe.7G224100_v2.0.a1
pyrus_communis	pycom15g22210
rosa_chinensis	RchiOBHm_Chr2g0120751 RchiOBHm_Chr7g0192641
rosa_laevigata	RLG00000004339 RLG00000004342 RLG00000018577
rosa_multiflora	Rmu_co8184858.1_g000001 Rmu_sc0000319.1_g000009 Rmu_sc0002040.1_g000002 Rmu_sc0035522.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123120 Rroxscaffold_3G00262810
rosa_rugosa	Rorug02G0230700 Rorug07G0003400
rosa_samantha	Rh2AG287400 Rh2BG298900 Rh2CG276800 Rh2DG312700 Rh7AG128400 Rh7BG130000 Rh7CG133300 Rh7DG131000
rosa_wichuraiana	Rw2G023050 Rw7G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	2 cut(s)	239, 252
AcsI	RAATTY	2 cut(s)	396, 588
AfiI	CCNNNNNNNGG	1 cut(s)	624
AgeI	ACCGGT	1 cut(s)	704
AgsI	TTSAA	4 cut(s)	395, 508, 586, 752
AluBI	AGCT	3 cut(s)	260, 464, 632
AluI	AGCT	3 cut(s)	260, 464, 632
AlwI	GGATC	2 cut(s)	239, 252
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	2 cut(s)	698, 739
ApoI	RAATTY	2 cut(s)	396, 588
ArsI	GACNNNNNNTTYG	2 cut(s)	465, 497
AseI	ATTAAT	1 cut(s)	170
AsiGI	ACCGGT	1 cut(s)	704
Asp700I	GAANNNNTTC	1 cut(s)	603
AspLEI	GCGC	1 cut(s)	492
AsuHPI	GGTGA	1 cut(s)	200
AsuII	TTCGAA	1 cut(s)	691
AsuNHI	GCTAGC	1 cut(s)	460
BamHI	GGATCC	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	685, 726
BccI	CCATC	4 cut(s)	554, 618, 646, 764
BceAI	ACGGC	2 cut(s)	29, 394
BcgI	CGANNNNNNTGC	2 cut(s)	721, 755
BciVI	GTATCC	2 cut(s)	106, 582
BclI	TGATCA	1 cut(s)	643
BfaI	CTAG	2 cut(s)	6, 461
BfoI	RGCGCY	1 cut(s)	493
BfuI	GTATCC	2 cut(s)	106, 582
BglII	AGATCT	1 cut(s)	520
BisI	GCNGC	2 cut(s)	699, 740
BlpI	GCTNAGC	1 cut(s)	304
BlsI	GCNGC	2 cut(s)	700, 741
BmiI	GGNNCC	1 cut(s)	246
BmtI	GCTAGC	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	30
Bpu1102I	GCTNAGC	1 cut(s)	304
Bpu14I	TTCGAA	1 cut(s)	691
BsaJI	CCNNGG	2 cut(s)	211, 576
BsaWI	WCCGGW	2 cut(s)	617, 704
Bsc4I	CCNNNNNNNGG	1 cut(s)	624
Bse118I	RCCGGY	1 cut(s)	704
Bse1I	ACTGG	2 cut(s)	368, 743
BseDI	CCNNGG	2 cut(s)	211, 576
BseGI	GGATG	5 cut(s)	451, 484, 565, 629, 690
BseLI	CCNNNNNNNGG	1 cut(s)	624
BseNI	ACTGG	2 cut(s)	368, 743
BseXI	GCAGC	2 cut(s)	685, 726
BshFI	GGCC	1 cut(s)	44
BshTI	ACCGGT	1 cut(s)	704
BsiSI	CCGG	2 cut(s)	618, 705
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	624
BsmFI	GGGAC	1 cut(s)	356
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	44
Bsp119I	TTCGAA	1 cut(s)	691
Bsp143I	GATC	3 cut(s)	244, 520, 643
Bsp1720I	GCTNAGC	1 cut(s)	304
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	246
BspOI	GCTAGC	1 cut(s)	464
BspPI	GGATC	2 cut(s)	239, 252
BspT104I	TTCGAA	1 cut(s)	691
BsrFI	RCCGGY	1 cut(s)	704
BsrI	ACTGG	2 cut(s)	368, 743
BssAI	RCCGGY	1 cut(s)	704
BssECI	CCNNGG	2 cut(s)	211, 576
BssMI	GATC	3 cut(s)	244, 520, 643
BssT1I	CCWWGG	2 cut(s)	211, 576
Bst4CI	ACNGT	1 cut(s)	679
BstBI	TTCGAA	1 cut(s)	691
BstC8I	GCNNGC	2 cut(s)	218, 462
BstDEI	CTNAG	4 cut(s)	131, 249, 304, 524
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	5 cut(s)	451, 484, 565, 629, 690
BstH2I	RGCGCY	1 cut(s)	493
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	3 cut(s)	247, 523, 646
BstMBI	GATC	3 cut(s)	244, 520, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 496, 745
BstNSI	RCATGY	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	685, 726
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	2 cut(s)	244, 520
BstYI	RGATCY	2 cut(s)	244, 520
BsuI	GTATCC	2 cut(s)	106, 582
BsuRI	GGCC	1 cut(s)	44
BtgI	CCRYGG	1 cut(s)	576
BtsCI	GGATG	5 cut(s)	451, 484, 565, 629, 690
BtsIMutI	CAGTG	1 cut(s)	750
Cac8I	GCNNGC	2 cut(s)	218, 462
CfoI	GCGC	1 cut(s)	492
Cfr10I	RCCGGY	1 cut(s)	704
CspAI	ACCGGT	1 cut(s)	704
CviAII	CATG	4 cut(s)	71, 577, 608, 641
DdeI	CTNAG	4 cut(s)	131, 249, 304, 524
DpnI	GATC	3 cut(s)	246, 522, 645
DpnII	GATC	3 cut(s)	244, 520, 643
Eco130I	CCWWGG	2 cut(s)	211, 576
EcoT14I	CCWWGG	2 cut(s)	211, 576
EcoT22I	ATGCAT	1 cut(s)	197
ErhI	CCWWGG	2 cut(s)	211, 576
FaeI	CATG	4 cut(s)	74, 580, 611, 644
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	4 cut(s)	70, 576, 607, 640
FauNDI	CATATG	1 cut(s)	63
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	2 cut(s)	699, 740
FokI	GGATG	5 cut(s)	458, 491, 572, 636, 697
Fsp4HI	GCNGC	2 cut(s)	699, 740
FspBI	CTAG	2 cut(s)	6, 461
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	2 cut(s)	699, 740
HaeII	RGCGCY	1 cut(s)	493
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	2 cut(s)	618, 705
HhaI	GCGC	1 cut(s)	492
Hin1II	CATG	4 cut(s)	74, 580, 611, 644
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HindIII	AAGCTT	2 cut(s)	258, 630
HinfI	GANTC	4 cut(s)	83, 534, 604, 728
HpaII	CCGG	2 cut(s)	618, 705
HphI	GGTGA	1 cut(s)	200
Hpy188III	TCNNGA	3 cut(s)	613, 732, 760
HpyAV	CCTTC	3 cut(s)	34, 436, 729
HpyCH4III	ACNGT	1 cut(s)	679
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	5 cut(s)	195, 220, 265, 402, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 496, 745
HpyF3I	CTNAG	4 cut(s)	131, 249, 304, 524
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	4 cut(s)	74, 580, 611, 644
HspAI	GCGC	1 cut(s)	490
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	3 cut(s)	244, 520, 643
LpnPI	CCDG	7 cut(s)	227, 258, 279, 381, 631, 718, 756
Lsp1109I	GCAGC	2 cut(s)	685, 726
MaeI	CTAG	2 cut(s)	6, 461
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	3 cut(s)	268, 541, 673
MalI	GATC	3 cut(s)	246, 522, 645
MboI	GATC	3 cut(s)	244, 520, 643
MboII	GAAGA	5 cut(s)	32, 35, 530, 777, 780
MflI	RGATCY	2 cut(s)	244, 520
MluCI	AATT	7 cut(s)	138, 386, 396, 422, 588, 723, 781
MnlI	CCTC	6 cut(s)	103, 179, 363, 469, 524, 614
Mph1103I	ATGCAT	1 cut(s)	197
MroXI	GAANNNNTTC	1 cut(s)	603
MseI	TTAA	4 cut(s)	51, 170, 201, 425
MspI	CCGG	2 cut(s)	618, 705
Mva1269I	GAATGC	1 cut(s)	197
MwoI	GCNNNNNNNGC	3 cut(s)	290, 496, 745
NcoI	CCATGG	1 cut(s)	576
NdeI	CATATG	1 cut(s)	63
NdeII	GATC	3 cut(s)	244, 520, 643
NheI	GCTAGC	1 cut(s)	460
NlaIII	CATG	4 cut(s)	74, 580, 611, 644
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	3 cut(s)	268, 541, 673
NsiI	ATGCAT	1 cut(s)	197
NspI	RCATGY	1 cut(s)	74
NspV	TTCGAA	1 cut(s)	691
PctI	GAATGC	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	4 cut(s)	83, 534, 604, 728
PinAI	ACCGGT	1 cut(s)	704
PkrI	GCNGC	2 cut(s)	700, 741
PshBI	ATTAAT	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	246
PsuI	RGATCY	2 cut(s)	244, 520
SaqAI	TTAA	4 cut(s)	51, 170, 201, 425
SatI	GCNGC	2 cut(s)	699, 740
Sau3AI	GATC	3 cut(s)	244, 520, 643
SetI	ASST	6 cut(s)	190, 262, 321, 331, 466, 634
SfuI	TTCGAA	1 cut(s)	691
Sse9I	AATT	7 cut(s)	138, 386, 396, 422, 588, 723, 781
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	2 cut(s)	6, 461
StyI	CCWWGG	2 cut(s)	211, 576
TaaI	ACNGT	1 cut(s)	679
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	691, 731
TasI	AATT	7 cut(s)	138, 386, 396, 422, 588, 723, 781
TfiI	GAWTC	4 cut(s)	83, 534, 604, 728
Tru1I	TTAA	4 cut(s)	51, 170, 201, 425
Tru9I	TTAA	4 cut(s)	51, 170, 201, 425
TscAI	CASTG	1 cut(s)	750
TseFI	GTSAC	3 cut(s)	268, 541, 673
TseI	GCWGC	2 cut(s)	698, 739
Tsp45I	GTSAC	3 cut(s)	268, 541, 673
TspDTI	ATGAA	5 cut(s)	33, 53, 80, 531, 596
TspRI	CASTG	1 cut(s)	750
VspI	ATTAAT	1 cut(s)	170
XapI	RAATTY	2 cut(s)	396, 588
XceI	RCATGY	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	603
XspI	CTAG	2 cut(s)	6, 461
Zsp2I	ATGCAT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.